RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 MALP21145 153 aa12.23□□□□□ -0.45
SQSTM1-215ENST00000514093 CTRLP40313 264 aa12.23□□□□□ -0.45
SQSTM1-215ENST00000514093 CCL20P78556 96 aa12.23□□□□□ -0.45
SQSTM1-215ENST00000514093 KRTAP11-1Q8IUC1 163 aa12.23□□□□□ -0.45
SQSTM1-215ENST00000514093 A0A087WZ39 114 aa12.22□□□□□ -0.45
SQSTM1-215ENST00000514093 GNG4P50150 75 aa12.22□□□□□ -0.45
SQSTM1-215ENST00000514093 EIF5AP63241 154 aaKnown RBP12.22□□□□□ -0.45
SQSTM1-215ENST00000514093 EIF5AL1Q6IS14 154 aaKnown RBP12.22□□□□□ -0.45
SQSTM1-215ENST00000514093 CDC42SE2Q9NRR3 84 aa12.22□□□□□ -0.45
SQSTM1-215ENST00000514093 GNG13Q9P2W3 67 aa12.22□□□□□ -0.45
SQSTM1-215ENST00000514093 IGLV1-50A0A075B6I6 118 aa12.21□□□□□ -0.45
SQSTM1-215ENST00000514093 I3L3M4 83 aa12.21□□□□□ -0.45
SQSTM1-215ENST00000514093 KRTAP1-4P0C5Y4 121 aa12.21□□□□□ -0.45
SQSTM1-215ENST00000514093 UMAD1C9J7I0 102 aa12.2□□□□□ -0.46
SQSTM1-215ENST00000514093 ESDP10768 282 aa12.2□□□□□ -0.46
SQSTM1-215ENST00000514093 NUDT10Q8NFP7 164 aa12.2□□□□□ -0.46
SQSTM1-215ENST00000514093 NUDT11Q96G61 164 aa12.2□□□□□ -0.46
SQSTM1-215ENST00000514093 CNFNQ9BYD5 112 aa12.2□□□□□ -0.46
SQSTM1-215ENST00000514093 BCL2L11O43521 198 aa12.19□□□□□ -0.46
SQSTM1-215ENST00000514093 TSHBP01222 138 aa12.19□□□□□ -0.46
SQSTM1-215ENST00000514093 TMEM242Q9NWH2 141 aa12.19□□□□□ -0.46
SQSTM1-215ENST00000514093 TRBV20OR9-2A0A075B6H5 130 aa12.18□□□□□ -0.46
SQSTM1-215ENST00000514093 FAM168BA1KXE4 195 aa12.18□□□□□ -0.46
SQSTM1-215ENST00000514093 SMLR1H3BR10 107 aa12.18□□□□□ -0.46
SQSTM1-215ENST00000514093 COX7A2LO14548 114 aa12.18□□□□□ -0.46
SQSTM1-215ENST00000514093 UBE2D1P51668 147 aa12.17□□□□□ -0.46
SQSTM1-215ENST00000514093 MRAP2Q96G30 205 aa12.17□□□□□ -0.46
SQSTM1-215ENST00000514093 MANBALQ9NQG1 85 aa12.17□□□□□ -0.46
SQSTM1-215ENST00000514093 C5orf38Q86SI9 138 aa12.16□□□□□ -0.46
SQSTM1-215ENST00000514093 SMIM12Q96EX1 92 aa12.16□□□□□ -0.46
SQSTM1-215ENST00000514093 C2orf48Q96LS8 159 aa12.16□□□□□ -0.46
SQSTM1-215ENST00000514093 RNASE13Q5GAN3 156 aaKnown RBP12.15□□□□□ -0.46
SQSTM1-215ENST00000514093 TEX261Q6UWH6 196 aa12.15□□□□□ -0.46
SQSTM1-215ENST00000514093 SMIM15Q7Z3B0 74 aa12.15□□□□□ -0.46
SQSTM1-215ENST00000514093 MRPL52Q86TS9 123 aaKnown RBP12.15□□□□□ -0.46
SQSTM1-215ENST00000514093 RNASE7Q9H1E1 156 aaKnown RBP12.15□□□□□ -0.46
SQSTM1-215ENST00000514093 TRAV1-1A0A0B4J248 108 aa12.14□□□□□ -0.47
SQSTM1-215ENST00000514093 C1orf196B1AJZ1 125 aa12.14□□□□□ -0.47
SQSTM1-215ENST00000514093 TSPAN13O95857 204 aa12.14□□□□□ -0.47
SQSTM1-215ENST00000514093 MED9Q9NWA0 146 aa12.14□□□□□ -0.47
SQSTM1-215ENST00000514093 TRBV6-5A0A0K0K1A5 114 aa12.13□□□□□ -0.47
SQSTM1-215ENST00000514093 RPP21Q9H633 154 aaKnown RBP12.13□□□□□ -0.47
SQSTM1-215ENST00000514093 BIN3Q9NQY0 253 aa12.13□□□□□ -0.47
SQSTM1-215ENST00000514093 SPAG11BQ08648 103 aa12.12□□□□□ -0.47
SQSTM1-215ENST00000514093 FAM19A5Q7Z5A7 132 aaPredicted RBP12.12□□□□□ -0.47
SQSTM1-215ENST00000514093 ST20Q9HBF5 79 aa12.12□□□□□ -0.47
SQSTM1-215ENST00000514093 TRAV13-1A0A0B4J241 112 aa12.11□□□□□ -0.47
SQSTM1-215ENST00000514093 C7orf77A4D0Y5 90 aa12.1□□□□□ -0.47
SQSTM1-215ENST00000514093 RPL13AP40429 203 aaKnown RBP12.1□□□□□ -0.47
SQSTM1-215ENST00000514093 RNF151Q2KHN1 245 aa12.1□□□□□ -0.47
SQSTM1-215ENST00000514093 TSKUQ8WUA8 353 aa12.1□□□□□ -0.47
SQSTM1-215ENST00000514093 K7EN84 100 aa12.08□□□□□ -0.48
SQSTM1-215ENST00000514093 POLR2KP53803 58 aaKnown RBP12.08□□□□□ -0.48
SQSTM1-215ENST00000514093 ZNF345Q14585 488 aa12.08□□□□□ -0.48
SQSTM1-215ENST00000514093 PDE6DO43924 150 aa12.07□□□□□ -0.48
SQSTM1-215ENST00000514093 C10orf25Q5T742 122 aa12.07□□□□□ -0.48
SQSTM1-215ENST00000514093 KRTAP7-1Q8IUC3 87 aa12.07□□□□□ -0.48
SQSTM1-215ENST00000514093 UBE2BP63146 152 aa12.06□□□□□ -0.48
SQSTM1-215ENST00000514093 GAGE2EQ4V326 116 aa12.06□□□□□ -0.48
SQSTM1-215ENST00000514093 OCC1Q8TAD7 63 aa12.06□□□□□ -0.48
SQSTM1-215ENST00000514093 IMMP2LQ96T52 175 aa12.06□□□□□ -0.48
SQSTM1-215ENST00000514093 MRPL35Q9NZE8 188 aaKnown RBP12.06□□□□□ -0.48
SQSTM1-215ENST00000514093 GAGE2DQ9UEU5 116 aa12.06□□□□□ -0.48
SQSTM1-215ENST00000514093 TRBV27A0A0K0K1C4 114 aa12.05□□□□□ -0.48
SQSTM1-215ENST00000514093 KANTRA0A1W2PQU2 76 aa12.05□□□□□ -0.48
SQSTM1-215ENST00000514093 UBE2D4Q9Y2X8 147 aa12.05□□□□□ -0.48
SQSTM1-215ENST00000514093 ORAOV1Q8WV07 137 aa12.04□□□□□ -0.48
SQSTM1-215ENST00000514093 UNQ6190/PRO20217Q6UXQ8 127 aa12.03□□□□□ -0.48
SQSTM1-215ENST00000514093 Q6ZUT4 128 aa12.03□□□□□ -0.48
SQSTM1-215ENST00000514093 OR10D4PQ8NGN7 298 aa12.03□□□□□ -0.48
SQSTM1-215ENST00000514093 CARHSP1Q9Y2V2 147 aaKnown RBP12.03□□□□□ -0.48
SQSTM1-215ENST00000514093 M0QXV9 152 aa12.02□□□□□ -0.49
SQSTM1-215ENST00000514093 FCER1GP30273 86 aa12.02□□□□□ -0.49
SQSTM1-215ENST00000514093 FAM210AQ96ND0 272 aa12.02□□□□□ -0.49
SQSTM1-215ENST00000514093 C6orf48Q9UBA6 75 aa12.02□□□□□ -0.49
SQSTM1-215ENST00000514093 CSDC2Q9Y534 153 aaKnown RBP12.02□□□□□ -0.49
SQSTM1-215ENST00000514093 MUC17Q685J3 4493 aa12.01□□□□□ -0.49
SQSTM1-215ENST00000514093 NDUFA1O15239 70 aa12.01□□□□□ -0.49
SQSTM1-215ENST00000514093 SMKR1H3BMG3 65 aa12□□□□□ -0.49
SQSTM1-215ENST00000514093 TEX46H3BTG2 121 aa12□□□□□ -0.49
SQSTM1-215ENST00000514093 GATCO43716 136 aaKnown RBP12□□□□□ -0.49
SQSTM1-215ENST00000514093 TLX1NBP0CAT3 122 aa12□□□□□ -0.49
SQSTM1-215ENST00000514093 VCYO14598 125 aa11.99□□□□□ -0.49
SQSTM1-215ENST00000514093 RAB4AP20338 218 aa11.99□□□□□ -0.49
SQSTM1-215ENST00000514093 SMDT1Q9H4I9 107 aa11.99□□□□□ -0.49
SQSTM1-215ENST00000514093 HMSDA8MTL9 139 aa11.98□□□□□ -0.49
SQSTM1-215ENST00000514093 TMEM241Q24JQ0 296 aa11.98□□□□□ -0.49
SQSTM1-215ENST00000514093 AMN1Q8IY45 258 aa11.98□□□□□ -0.49
SQSTM1-215ENST00000514093 F8WDY8 70 aa11.97□□□□□ -0.49
SQSTM1-215ENST00000514093 ZNF861PO60384 105 aa11.97□□□□□ -0.49
SQSTM1-215ENST00000514093 TMEM191AQ9H0A3 160 aa11.97□□□□□ -0.49
SQSTM1-215ENST00000514093 A8MWL6 223 aa11.96□□□□□ -0.49
SQSTM1-215ENST00000514093 SMAGPQ0VAQ4 97 aa11.96□□□□□ -0.49
SQSTM1-215ENST00000514093 BORCS7Q96B45 105 aa11.96□□□□□ -0.49
SQSTM1-215ENST00000514093 A0A087X002 238 aa11.95□□□□□ -0.5
SQSTM1-215ENST00000514093 IGHV3OR16-9A0A0B4J2B5 98 aa11.94□□□□□ -0.5
SQSTM1-215ENST00000514093 C9orf129Q5T035 196 aaKnown RBP11.94□□□□□ -0.5
SQSTM1-215ENST00000514093 RETNLBQ9BQ08 111 aa11.94□□□□□ -0.5
SQSTM1-215ENST00000514093 SUMO2P61956 95 aaKnown RBP11.93□□□□□ -0.5
SQSTM1-215ENST00000514093 NRACQ8N912 160 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms