RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 RNF185Q96GF1 192 aa6.41□□□□□ -1.38
LIMCH1-209ENST00000509277 PKIGQ9Y2B9 76 aa6.41□□□□□ -1.38
LIMCH1-209ENST00000509277 LGALS9O00182 355 aa6.41□□□□□ -1.38
LIMCH1-209ENST00000509277 PRM2P04554 102 aa6.41□□□□□ -1.38
LIMCH1-209ENST00000509277 CIRBPQ14011 172 aaKnown RBP6.41□□□□□ -1.38
LIMCH1-209ENST00000509277 DEFB121Q5J5C9 76 aa6.41□□□□□ -1.38
LIMCH1-209ENST00000509277 C1orf43Q9BWL3 253 aa6.41□□□□□ -1.38
LIMCH1-209ENST00000509277 SUMO2P61956 95 aaKnown RBP6.4□□□□□ -1.38
LIMCH1-209ENST00000509277 ATXN8Q156A1 80 aa6.4□□□□□ -1.38
LIMCH1-209ENST00000509277 FAM19A5Q7Z5A7 132 aaPredicted RBP6.4□□□□□ -1.38
LIMCH1-209ENST00000509277 AGPAT4-IT1Q9H0P7 198 aa6.4□□□□□ -1.38
LIMCH1-209ENST00000509277 IGKV3D-7A0A0C4DH55 119 aa6.4□□□□□ -1.39
LIMCH1-209ENST00000509277 MRAPQ8TCY5 172 aa6.4□□□□□ -1.39
LIMCH1-209ENST00000509277 DSCR8Q96T75 97 aa6.4□□□□□ -1.39
LIMCH1-209ENST00000509277 JPT2Q9H910 190 aa6.4□□□□□ -1.39
LIMCH1-209ENST00000509277 U3KQE9 123 aa6.4□□□□□ -1.39
LIMCH1-209ENST00000509277 A8MZ25 164 aa6.4□□□□□ -1.39
LIMCH1-209ENST00000509277 SMIM2Q9BVW6 85 aa6.4□□□□□ -1.39
LIMCH1-209ENST00000509277 VCX2Q9H322 139 aa6.4□□□□□ -1.39
LIMCH1-209ENST00000509277 KLK9Q9UKQ9 250 aa6.4□□□□□ -1.39
LIMCH1-209ENST00000509277 CSDC2Q9Y534 153 aaKnown RBP6.4□□□□□ -1.39
LIMCH1-209ENST00000509277 HIST1H4AP62805 103 aaKnown RBP6.39□□□□□ -1.39
LIMCH1-209ENST00000509277 TAL2Q16559 108 aa6.39□□□□□ -1.39
LIMCH1-209ENST00000509277 RASL10AQ92737 203 aa6.39□□□□□ -1.39
LIMCH1-209ENST00000509277 TMEM101Q96IK0 257 aa6.39□□□□□ -1.39
LIMCH1-209ENST00000509277 J3QQQ9 107 aa6.39□□□□□ -1.39
LIMCH1-209ENST00000509277 IGLC6P0CF74 106 aa6.39□□□□□ -1.39
LIMCH1-209ENST00000509277 DCANP1Q8TF63 244 aa6.39□□□□□ -1.39
LIMCH1-209ENST00000509277 BAALCQ8WXS3 180 aa6.39□□□□□ -1.39
LIMCH1-209ENST00000509277 K7EQG2 157 aa6.38□□□□□ -1.39
LIMCH1-209ENST00000509277 PDE6HQ13956 83 aa6.38□□□□□ -1.39
LIMCH1-209ENST00000509277 C9orf66Q5T8R8 295 aa6.38□□□□□ -1.39
LIMCH1-209ENST00000509277 MAP6D1Q9H9H5 199 aa6.38□□□□□ -1.39
LIMCH1-209ENST00000509277 ATP6V0E2Q8NHE4 81 aa6.38□□□□□ -1.39
LIMCH1-209ENST00000509277 KLK9Q2XQG4 91 aa6.38□□□□□ -1.39
LIMCH1-209ENST00000509277 M0R2P5 195 aa6.37□□□□□ -1.39
LIMCH1-209ENST00000509277 GNRH2O43555 120 aa6.37□□□□□ -1.39
LIMCH1-209ENST00000509277 IGKV3OR2-268A0A0C4DH90 116 aa6.37□□□□□ -1.39
LIMCH1-209ENST00000509277 A0A0J9YY99 117 aa6.37□□□□□ -1.39
LIMCH1-209ENST00000509277 TSPEAR-AS2P59090 65 aa6.37□□□□□ -1.39
LIMCH1-209ENST00000509277 ORMDL2Q53FV1 153 aa6.37□□□□□ -1.39
LIMCH1-209ENST00000509277 SMIM9A6NGZ8 99 aa6.37□□□□□ -1.39
LIMCH1-209ENST00000509277 RHOHQ15669 191 aa6.37□□□□□ -1.39
LIMCH1-209ENST00000509277 ODF3L2Q3SX64 289 aa6.37□□□□□ -1.39
LIMCH1-209ENST00000509277 C11orf21Q9P2W6 132 aa6.37□□□□□ -1.39
LIMCH1-209ENST00000509277 C5orf47Q569G3 176 aa6.36□□□□□ -1.39
LIMCH1-209ENST00000509277 LYPD1Q8N2G4 141 aa6.36□□□□□ -1.39
LIMCH1-209ENST00000509277 A0A0U1RQV1 116 aa6.36□□□□□ -1.39
LIMCH1-209ENST00000509277 TRIAP1O43715 76 aa6.36□□□□□ -1.39
LIMCH1-209ENST00000509277 IGLV1-51P01701 117 aa6.36□□□□□ -1.39
LIMCH1-209ENST00000509277 KIR2DL5BQ8NHK3 375 aa6.36□□□□□ -1.39
LIMCH1-209ENST00000509277 ODF3Q96PU9 254 aa6.36□□□□□ -1.39
LIMCH1-209ENST00000509277 A0A0J9YXV3 536 aa6.35□□□□□ -1.39
LIMCH1-209ENST00000509277 DEFB4AO15263 64 aa6.35□□□□□ -1.39
LIMCH1-209ENST00000509277 OR13C6PQ8NH95 151 aa6.35□□□□□ -1.39
LIMCH1-209ENST00000509277 LINC01587Q99440 93 aa6.35□□□□□ -1.39
LIMCH1-209ENST00000509277 SDIM1Q6ZPB5 146 aa6.35□□□□□ -1.39
LIMCH1-209ENST00000509277 PRR9Q5T870 116 aa6.35□□□□□ -1.39
LIMCH1-209ENST00000509277 A0A0J9YX75 114 aa6.34□□□□□ -1.39
LIMCH1-209ENST00000509277 TINCRA0A1B0GVN0 87 aa6.34□□□□□ -1.39
LIMCH1-209ENST00000509277 F5H768 121 aa6.34□□□□□ -1.39
LIMCH1-209ENST00000509277 SOCS3O14543 225 aa6.34□□□□□ -1.39
LIMCH1-209ENST00000509277 NXPH4O95158 308 aa6.34□□□□□ -1.39
LIMCH1-209ENST00000509277 UBE2D3P61077 147 aa6.34□□□□□ -1.39
LIMCH1-209ENST00000509277 UBE2D2P62837 147 aa6.34□□□□□ -1.39
LIMCH1-209ENST00000509277 C4orf26Q17RF5 130 aa6.34□□□□□ -1.39
LIMCH1-209ENST00000509277 A0A087WVE0 104 aa6.34□□□□□ -1.4
LIMCH1-209ENST00000509277 Q9HAA7 133 aa6.34□□□□□ -1.4
LIMCH1-209ENST00000509277 U3KQK5 164 aa6.34□□□□□ -1.4
LIMCH1-209ENST00000509277 J3KT08 172 aa6.33□□□□□ -1.4
LIMCH1-209ENST00000509277 IGHV3-33P01772 117 aa6.33□□□□□ -1.4
LIMCH1-209ENST00000509277 UBE2D1P51668 147 aa6.33□□□□□ -1.4
LIMCH1-209ENST00000509277 A0A1B0GX51 115 aa6.33□□□□□ -1.4
LIMCH1-209ENST00000509277 DEFB135Q30KP9 77 aa6.33□□□□□ -1.4
LIMCH1-209ENST00000509277 ZMAT4Q9H898 229 aa6.33□□□□□ -1.4
LIMCH1-209ENST00000509277 IGHV3-30P01768 117 aa6.33□□□□□ -1.4
LIMCH1-209ENST00000509277 IGHV3-30-5P0DP03 117 aa6.33□□□□□ -1.4
LIMCH1-209ENST00000509277 TRAV12-1A0A0B4J245 112 aa6.32□□□□□ -1.4
LIMCH1-209ENST00000509277 SDHAF1A6NFY7 115 aa6.32□□□□□ -1.4
LIMCH1-209ENST00000509277 DGAT2L7PQ6IED9 249 aa6.32□□□□□ -1.4
LIMCH1-209ENST00000509277 NEXN-AS1Q8NBZ9 246 aa6.32□□□□□ -1.4
LIMCH1-209ENST00000509277 TRBV10-2A0A0K0K1G8 114 aa6.31□□□□□ -1.4
LIMCH1-209ENST00000509277 TRACP01848 142 aa6.31□□□□□ -1.4
LIMCH1-209ENST00000509277 NRACQ8N912 160 aa6.31□□□□□ -1.4
LIMCH1-209ENST00000509277 RBMY1BA6NDE4 496 aaKnown RBP6.31□□□□□ -1.4
LIMCH1-209ENST00000509277 RBMY1EA6NEQ0 496 aaKnown RBP6.31□□□□□ -1.4
LIMCH1-209ENST00000509277 RBMY1DP0C7P1 496 aaKnown RBP6.31□□□□□ -1.4
LIMCH1-209ENST00000509277 ZNF876PQ49A33 203 aa6.31□□□□□ -1.4
LIMCH1-209ENST00000509277 TMEM126AQ9H061 195 aa6.31□□□□□ -1.4
LIMCH1-209ENST00000509277 ICOSQ9Y6W8 199 aa6.31□□□□□ -1.4
LIMCH1-209ENST00000509277 IGHV3-38A0A0C4DH36 116 aa6.31□□□□□ -1.4
LIMCH1-209ENST00000509277 DPH3P1Q9H4G8 78 aa6.31□□□□□ -1.4
LIMCH1-209ENST00000509277 TRAV25A0A0B4J276 109 aa6.3□□□□□ -1.4
LIMCH1-209ENST00000509277 TRAV21A0A0B4J279 112 aa6.3□□□□□ -1.4
LIMCH1-209ENST00000509277 DNAL4O96015 105 aa6.3□□□□□ -1.4
LIMCH1-209ENST00000509277 WFDC9Q8NEX5 89 aa6.3□□□□□ -1.4
LIMCH1-209ENST00000509277 ZNRF2Q8NHG8 242 aa6.3□□□□□ -1.4
LIMCH1-209ENST00000509277 H7C423 109 aa6.3□□□□□ -1.4
LIMCH1-209ENST00000509277 IGHV3-53P01767 116 aa6.3□□□□□ -1.4
LIMCH1-209ENST00000509277 C9orf47Q6ZRZ4 202 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms