RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	IGKV2-24	A0A0C4DH68	120 aa		7.33	□□□□□ -1.24
VTI1A-208	ENST00000494728		A0A1B0GUT8	65 aa		7.33	□□□□□ -1.24
VTI1A-208	ENST00000494728		H7C423	109 aa		7.33	□□□□□ -1.24
VTI1A-208	ENST00000494728	RAB4A	P20338	218 aa		7.33	□□□□□ -1.24
VTI1A-208	ENST00000494728	PMCH	P20382	165 aa		7.33	□□□□□ -1.24
VTI1A-208	ENST00000494728	XCL1	P47992	114 aa		7.33	□□□□□ -1.24
VTI1A-208	ENST00000494728	POLR2K	P53803	58 aa	Known RBP	7.33	□□□□□ -1.24
VTI1A-208	ENST00000494728	TEX261	Q6UWH6	196 aa		7.33	□□□□□ -1.24
VTI1A-208	ENST00000494728	OR5A1	Q8NGJ0	315 aa		7.33	□□□□□ -1.24
VTI1A-208	ENST00000494728	TMEM191A	Q9H0A3	160 aa		7.33	□□□□□ -1.24
VTI1A-208	ENST00000494728		V9GYV3	84 aa		7.33	□□□□□ -1.24
VTI1A-208	ENST00000494728	LINC00959	A0A1B0GUT2	108 aa		7.32	□□□□□ -1.24
VTI1A-208	ENST00000494728	ZNF727	A8MUV8	499 aa		7.32	□□□□□ -1.24
VTI1A-208	ENST00000494728	CCL25	O15444	150 aa		7.32	□□□□□ -1.24
VTI1A-208	ENST00000494728	ZNF25	P17030	456 aa	Predicted RBP	7.32	□□□□□ -1.24
VTI1A-208	ENST00000494728	SERTAD4-AS1	Q5TG53	156 aa		7.32	□□□□□ -1.24
VTI1A-208	ENST00000494728	ST20	Q9HBF5	79 aa		7.32	□□□□□ -1.24
VTI1A-208	ENST00000494728	OSTC	Q9NRP0	149 aa		7.32	□□□□□ -1.24
VTI1A-208	ENST00000494728	TRBV27	A0A0K0K1C4	114 aa		7.31	□□□□□ -1.24
VTI1A-208	ENST00000494728		C9JQL5	133 aa		7.31	□□□□□ -1.24
VTI1A-208	ENST00000494728	NDUFS6	O75380	124 aa	Known RBP	7.31	□□□□□ -1.24
VTI1A-208	ENST00000494728	NRAC	Q8N912	160 aa		7.31	□□□□□ -1.24
VTI1A-208	ENST00000494728	NUP35	Q8NFH5	326 aa		7.31	□□□□□ -1.24
VTI1A-208	ENST00000494728	ISOC2	Q96AB3	205 aa		7.31	□□□□□ -1.24
VTI1A-208	ENST00000494728	MRAP2	Q96G30	205 aa		7.31	□□□□□ -1.24
VTI1A-208	ENST00000494728	SRSF3	P84103	164 aa	Known RBP	7.3	□□□□□ -1.24
VTI1A-208	ENST00000494728	ODF1	Q14990	250 aa		7.3	□□□□□ -1.24
VTI1A-208	ENST00000494728	MAJIN	Q3KP22	176 aa		7.3	□□□□□ -1.24
VTI1A-208	ENST00000494728	RNASE13	Q5GAN3	156 aa	Known RBP	7.3	□□□□□ -1.24
VTI1A-208	ENST00000494728	CFAP161	Q6P656	301 aa		7.3	□□□□□ -1.24
VTI1A-208	ENST00000494728	MRPL52	Q86TS9	123 aa	Known RBP	7.3	□□□□□ -1.24
VTI1A-208	ENST00000494728	BORCS7	Q96B45	105 aa		7.3	□□□□□ -1.24
VTI1A-208	ENST00000494728	DPH3	Q96FX2	82 aa		7.3	□□□□□ -1.24
VTI1A-208	ENST00000494728	CDC42SE2	Q9NRR3	84 aa		7.3	□□□□□ -1.24
VTI1A-208	ENST00000494728	PLA2G2D	Q9UNK4	145 aa		7.3	□□□□□ -1.24
VTI1A-208	ENST00000494728	C7orf77	A4D0Y5	90 aa		7.29	□□□□□ -1.24
VTI1A-208	ENST00000494728	RPL23	P62829	140 aa	Known RBP	7.29	□□□□□ -1.24
VTI1A-208	ENST00000494728	PRR3	P79522	188 aa	Known RBP	7.29	□□□□□ -1.24
VTI1A-208	ENST00000494728		Q6ZRU5	148 aa		7.29	□□□□□ -1.24
VTI1A-208	ENST00000494728	STPG4	Q8N801	248 aa		7.29	□□□□□ -1.24
VTI1A-208	ENST00000494728	MRPL51	Q4U2R6	128 aa	Known RBP	7.28	□□□□□ -1.24
VTI1A-208	ENST00000494728	ZNF664	Q8N3J9	261 aa		7.28	□□□□□ -1.24
VTI1A-208	ENST00000494728	TMEM101	Q96IK0	257 aa		7.28	□□□□□ -1.24
VTI1A-208	ENST00000494728	BTF3L4	Q96K17	158 aa		7.28	□□□□□ -1.24
VTI1A-208	ENST00000494728	IGHV1-58	A0A0C4DH39	117 aa		7.27	□□□□□ -1.25
VTI1A-208	ENST00000494728		Q6ZUT4	128 aa		7.27	□□□□□ -1.25
VTI1A-208	ENST00000494728	FAM104A	Q969W3	186 aa		7.27	□□□□□ -1.25
VTI1A-208	ENST00000494728	CARD19	Q96LW7	228 aa		7.27	□□□□□ -1.25
VTI1A-208	ENST00000494728	UBE2D4	Q9Y2X8	147 aa		7.27	□□□□□ -1.25
VTI1A-208	ENST00000494728	SUMO2	P61956	95 aa	Known RBP	7.26	□□□□□ -1.25
VTI1A-208	ENST00000494728	RIG	Q13278	110 aa		7.26	□□□□□ -1.25
VTI1A-208	ENST00000494728	ADIRF	Q15847	76 aa		7.26	□□□□□ -1.25
VTI1A-208	ENST00000494728	CD164L2	Q6UWJ8	174 aa		7.26	□□□□□ -1.25
VTI1A-208	ENST00000494728	SMIM27	A0A1W2PRY6	76 aa		7.25	□□□□□ -1.25
VTI1A-208	ENST00000494728	RAB14	P61106	215 aa		7.25	□□□□□ -1.25
VTI1A-208	ENST00000494728	PEA15	Q15121	130 aa		7.25	□□□□□ -1.25
VTI1A-208	ENST00000494728	SS18	Q15532	418 aa		7.25	□□□□□ -1.25
VTI1A-208	ENST00000494728	TMEM241	Q24JQ0	296 aa		7.25	□□□□□ -1.25
VTI1A-208	ENST00000494728	FAM104B	Q5XKR9	115 aa		7.25	□□□□□ -1.25
VTI1A-208	ENST00000494728	C7orf33	Q8WU49	177 aa		7.25	□□□□□ -1.25
VTI1A-208	ENST00000494728	NAT8B	Q9UHF3	227 aa		7.25	□□□□□ -1.25
VTI1A-208	ENST00000494728	IGLV4-69	A0A075B6H9	119 aa		7.24	□□□□□ -1.25
VTI1A-208	ENST00000494728	VCY	O14598	125 aa		7.24	□□□□□ -1.25
VTI1A-208	ENST00000494728	FCER1G	P30273	86 aa		7.24	□□□□□ -1.25
VTI1A-208	ENST00000494728	CAMP	P49913	170 aa		7.24	□□□□□ -1.25
VTI1A-208	ENST00000494728	RPL39	P62891	51 aa	Known RBP	7.24	□□□□□ -1.25
VTI1A-208	ENST00000494728	SYCN	Q0VAF6	134 aa		7.24	□□□□□ -1.25
VTI1A-208	ENST00000494728	FAM74A3	Q4VXF1	159 aa		7.24	□□□□□ -1.25
VTI1A-208	ENST00000494728	TRAV13-1	A0A0B4J241	112 aa		7.23	□□□□□ -1.25
VTI1A-208	ENST00000494728	NAT8	Q9UHE5	227 aa		7.23	□□□□□ -1.25
VTI1A-208	ENST00000494728	CSDC2	Q9Y534	153 aa	Known RBP	7.23	□□□□□ -1.25
VTI1A-208	ENST00000494728		A0A1B0GXF2	115 aa		7.22	□□□□□ -1.25
VTI1A-208	ENST00000494728	ZNF561-AS1	K7EIQ3	104 aa		7.22	□□□□□ -1.25
VTI1A-208	ENST00000494728	COX7A2L	O14548	114 aa		7.22	□□□□□ -1.25
VTI1A-208	ENST00000494728	PTTG1IP	P53801	180 aa		7.22	□□□□□ -1.25
VTI1A-208	ENST00000494728	MRPL54	Q6P161	138 aa	Known RBP	7.22	□□□□□ -1.25
VTI1A-208	ENST00000494728	C5orf38	Q86SI9	138 aa		7.22	□□□□□ -1.25
VTI1A-208	ENST00000494728	OPRPN	Q99935	248 aa	Predicted RBP	7.22	□□□□□ -1.25
VTI1A-208	ENST00000494728	RNF213	Q63HN8	5207 aa		7.22	□□□□□ -1.25
VTI1A-208	ENST00000494728	TRBV24-1	A0A075B6N3	115 aa		7.21	□□□□□ -1.26
VTI1A-208	ENST00000494728		A0A0J9YXV3	536 aa		7.21	□□□□□ -1.26
VTI1A-208	ENST00000494728		A0A1W2PNN7	141 aa		7.21	□□□□□ -1.26
VTI1A-208	ENST00000494728	C1orf196	B1AJZ1	125 aa		7.21	□□□□□ -1.26
VTI1A-208	ENST00000494728		D6R8Y8	96 aa		7.21	□□□□□ -1.26
VTI1A-208	ENST00000494728	TNFRSF6B	O95407	300 aa		7.21	□□□□□ -1.26
VTI1A-208	ENST00000494728	NPY	P01303	97 aa		7.21	□□□□□ -1.26
VTI1A-208	ENST00000494728	KIR2DL4	Q99706	377 aa		7.21	□□□□□ -1.26
VTI1A-208	ENST00000494728	SMIM2	Q9BVW6	85 aa		7.21	□□□□□ -1.26
VTI1A-208	ENST00000494728	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	7.2	□□□□□ -1.26
VTI1A-208	ENST00000494728	PPP1R2P9	O14990	202 aa		7.2	□□□□□ -1.26
VTI1A-208	ENST00000494728	MAL	P21145	153 aa		7.2	□□□□□ -1.26
VTI1A-208	ENST00000494728	RPL32	P62910	135 aa	Known RBP	7.2	□□□□□ -1.26
VTI1A-208	ENST00000494728	GAGE2B	Q13066	116 aa		7.2	□□□□□ -1.26
VTI1A-208	ENST00000494728	LINC01600	Q96MT4	127 aa		7.2	□□□□□ -1.26
VTI1A-208	ENST00000494728	C20orf78	Q9BR46	151 aa		7.2	□□□□□ -1.26
VTI1A-208	ENST00000494728	TIMM21	Q9BVV7	248 aa		7.2	□□□□□ -1.26
VTI1A-208	ENST00000494728	SMDT1	Q9H4I9	107 aa		7.2	□□□□□ -1.26
VTI1A-208	ENST00000494728	LINC00474	Q9P2X8	69 aa		7.2	□□□□□ -1.26
VTI1A-208	ENST00000494728	LOC107984640	A0A0U1RRK4	108 aa		7.19	□□□□□ -1.26
VTI1A-208	ENST00000494728	TCAP	O15273	167 aa		7.19	□□□□□ -1.26

Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms