RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 APCP25054 2843 aa8.07□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 DEFB130BP0DP73 79 aa8.07□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 DEFB130AP0DP74 79 aa8.07□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 COL6A5A8TX70 2615 aa8.07□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 F5H768 121 aa8.06□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 LEPROTO15243 131 aa8.06□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 A0A0J9YXV3 536 aa8.06□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 CRIP2P52943 208 aaPredicted RBP8.06□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 CSDC2Q9Y534 153 aaKnown RBP8.06□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 NIPBLQ6KC79 2804 aaeCLIP8.06□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 CRPP02741 224 aa8.06□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 NEXN-AS1Q8NBZ9 246 aa8.06□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 DNAJC9-AS1A6NH13 148 aa8.05□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 UBE2D1P51668 147 aa8.05□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 UBE2D3P61077 147 aa8.05□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 UBE2D2P62837 147 aa8.05□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 PRR9Q5T870 116 aa8.05□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 ZMAT4Q9H898 229 aa8.05□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 MDFICQ9P1T7 246 aa8.05□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 C11orf21Q9P2W6 132 aa8.05□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 CLPSL1A2RUU4 121 aa8.05□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 FAM19A5Q7Z5A7 132 aaPredicted RBP8.05□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 J3QLI3 93 aa8.05□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 CCL24O00175 119 aa8.04□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 FSTL3O95633 263 aa8.04□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 ATP5G1P05496 136 aa8.04□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 PRIMA1Q86XR5 153 aa8.04□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 A0A096LPF7 62 aa8.04□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 ESM1Q9NQ30 184 aa8.04□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 INAFM1C9JVW0 142 aa8.04□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 TRIAP1O43715 76 aa8.04□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 RHOHQ15669 191 aa8.04□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 LRRC75A-AS1Q8N1F1 130 aa8.04□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 WFDC10AQ9H1F0 79 aa8.04□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 SOCS3O14543 225 aa8.03□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 S100A7L2Q5SY68 101 aa8.03□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 KLK5Q9Y337 293 aaPredicted RBP8.03□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 MXRA5Q9NR99 2828 aa8.03□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 DEFB4AO15263 64 aa8.03□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 ELANEP08246 267 aa8.03□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 RASL10AQ92737 203 aa8.03□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 IGHV3-30P01768 117 aa8.03□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 IGHV3-30-5P0DP03 117 aa8.03□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 PKIGQ9Y2B9 76 aa8.03□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 TINCRA0A1B0GVN0 87 aa8.03□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 RBMY1BA6NDE4 496 aaKnown RBP8.03□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 RBMY1EA6NEQ0 496 aaKnown RBP8.03□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 RBMY1DP0C7P1 496 aaKnown RBP8.03□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 RBMY1A1P0DJD3 496 aaKnown RBP8.03□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 RBMY1CP0DJD4 496 aa8.03□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 ZNF415Q09FC8 603 aa8.03□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 TMEM243Q9BU79 118 aa8.03□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 P0DMU3 169 aa8.02□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 FAM231AP0DMU4 169 aa8.02□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 FAM231CP0DMU5 169 aa8.02□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 RBMY1FQ15415 496 aaKnown RBP8.02□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 DAND5Q8N907 189 aa8.02□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 HRCT1Q6UXD1 115 aa8.02□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 BSNQ9UPA5 3926 aa8.01□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 UBE2L6O14933 153 aa8.01□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 RBM3P98179 157 aaKnown RBP8.01□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 Q6ZSV7 163 aa8.01□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 IGHV1OR15-1A0A075B7D0 117 aa8.01□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 LINC00158P58513 81 aa8.01□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 MRAPQ8TCY5 172 aa8.01□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 Q6YL49 198 aa8.01□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 OPRPNQ99935 248 aaPredicted RBP8.01□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 C11orf68Q9H3H3 251 aaKnown RBP8.01□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 IMUPQ9GZP8 106 aa8□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 COX7CP15954 63 aa8□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 PAX4O43316 350 aa8□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 PLA2G2AP14555 144 aa8□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 ZNF22P17026 224 aaPredicted RBP8□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 TRBV30A0A0K0K1B3 111 aa7.99□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 I3L3M4 83 aa7.99□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 TIMM17AQ99595 171 aa7.99□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 OVOL2Q9BRP0 275 aa7.99□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 TRGV4A0A0C4DH28 118 aa7.99□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 PSMB8P28062 276 aa7.99□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 SDIM1Q6ZPB5 146 aa7.99□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 NRACQ8N912 160 aa7.99□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 ZNF702PQ9H963 129 aa7.99□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 FHL3Q13643 280 aa7.98□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 A0A0J9YXY3 114 aa7.98□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 PROK1P58294 105 aa7.98□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 DSCR8Q96T75 97 aa7.98□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 NHLRC4P0CG21 123 aaPredicted RBP7.97□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 SUMO4Q6EEV6 95 aa7.97□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 RNF152Q8N8N0 203 aa7.97□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 H7C423 109 aa7.97□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 IGHV3-30-3P0DP02 117 aa7.97□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 DAZ2Q13117 558 aaKnown RBP7.97□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 DAZ4Q86SG3 579 aaKnown RBP7.97□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 GPHB5Q86YW7 130 aa7.97□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 NOP10Q9NPE3 64 aaKnown RBP7.97□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 DAZ3Q9NR90 486 aaKnown RBP7.97□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 LINC00526Q96FQ7 95 aa7.97□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 CEMP1Q6PRD7 247 aaPredicted RBP7.96□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 C9orf47Q6ZRZ4 202 aa7.96□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 ZFAND2AQ8N6M9 145 aa7.96□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms