RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 AMN1Q8IY45 258 aa14.33□□□□□ -0.12
PTPN4-211ENST00000488279 PLAC8Q9NZF1 115 aa14.33□□□□□ -0.12
PTPN4-211ENST00000488279 RIGQ13278 110 aa14.32□□□□□ -0.12
PTPN4-211ENST00000488279 PRSS3P2Q8NHM4 247 aa14.32□□□□□ -0.12
PTPN4-211ENST00000488279 CCL25O15444 150 aa14.31□□□□□ -0.12
PTPN4-211ENST00000488279 MRPL52Q86TS9 123 aaKnown RBP14.31□□□□□ -0.12
PTPN4-211ENST00000488279 NUP35Q8NFH5 326 aa14.31□□□□□ -0.12
PTPN4-211ENST00000488279 V9GYV3 84 aa14.31□□□□□ -0.12
PTPN4-211ENST00000488279 VCYO14598 125 aa14.3□□□□□ -0.12
PTPN4-211ENST00000488279 SS18Q15532 418 aa14.3□□□□□ -0.12
PTPN4-211ENST00000488279 TMEM241Q24JQ0 296 aa14.3□□□□□ -0.12
PTPN4-211ENST00000488279 MAJINQ3KP22 176 aa14.3□□□□□ -0.12
PTPN4-211ENST00000488279 Q6ZRU5 148 aa14.3□□□□□ -0.12
PTPN4-211ENST00000488279 C7orf33Q8WU49 177 aa14.3□□□□□ -0.12
PTPN4-211ENST00000488279 CDC42SE2Q9NRR3 84 aa14.3□□□□□ -0.12
PTPN4-211ENST00000488279 IGKV2-24A0A0C4DH68 120 aa14.29□□□□□ -0.12
PTPN4-211ENST00000488279 C7orf77A4D0Y5 90 aa14.29□□□□□ -0.12
PTPN4-211ENST00000488279 PPP1R17O96001 155 aa14.29□□□□□ -0.12
PTPN4-211ENST00000488279 FAM74A3Q4VXF1 159 aa14.29□□□□□ -0.12
PTPN4-211ENST00000488279 ZNF664Q8N3J9 261 aa14.29□□□□□ -0.12
PTPN4-211ENST00000488279 IGHV1-58A0A0C4DH39 117 aa14.28□□□□□ -0.12
PTPN4-211ENST00000488279 ISOC2Q96AB3 205 aa14.28□□□□□ -0.12
PTPN4-211ENST00000488279 HMCN2Q8NDA2 5059 aa14.28□□□□□ -0.12
PTPN4-211ENST00000488279 SMKR1H3BMG3 65 aa14.27□□□□□ -0.13
PTPN4-211ENST00000488279 FCER1GP30273 86 aa14.27□□□□□ -0.13
PTPN4-211ENST00000488279 CD164L2Q6UWJ8 174 aa14.27□□□□□ -0.13
PTPN4-211ENST00000488279 NAT8BQ9UHF3 227 aa14.27□□□□□ -0.13
PTPN4-211ENST00000488279 PHOX2AO14813 284 aa14.26□□□□□ -0.13
PTPN4-211ENST00000488279 SUMO2P61956 95 aaKnown RBP14.25□□□□□ -0.13
PTPN4-211ENST00000488279 RPL23P62829 140 aaKnown RBP14.25□□□□□ -0.13
PTPN4-211ENST00000488279 SMAGPQ0VAQ4 97 aa14.25□□□□□ -0.13
PTPN4-211ENST00000488279 STPG4Q8N801 248 aa14.25□□□□□ -0.13
PTPN4-211ENST00000488279 LINC00474Q9P2X8 69 aa14.25□□□□□ -0.13
PTPN4-211ENST00000488279 PKIGQ9Y2B9 76 aa14.25□□□□□ -0.13
PTPN4-211ENST00000488279 NRACQ8N912 160 aa14.24□□□□□ -0.13
PTPN4-211ENST00000488279 LINC00526Q96FQ7 95 aa14.24□□□□□ -0.13
PTPN4-211ENST00000488279 KIR2DL4Q99706 377 aa14.24□□□□□ -0.13
PTPN4-211ENST00000488279 ZNF561-AS1K7EIQ3 104 aa14.23□□□□□ -0.13
PTPN4-211ENST00000488279 ADIRFQ15847 76 aa14.23□□□□□ -0.13
PTPN4-211ENST00000488279 CARD19Q96LW7 228 aa14.23□□□□□ -0.13
PTPN4-211ENST00000488279 NAT8Q9UHE5 227 aa14.23□□□□□ -0.13
PTPN4-211ENST00000488279 PLA2G2DQ9UNK4 145 aa14.23□□□□□ -0.13
PTPN4-211ENST00000488279 CSDC2Q9Y534 153 aaKnown RBP14.23□□□□□ -0.13
PTPN4-211ENST00000488279 A0A096LNI7 61 aa14.22□□□□□ -0.13
PTPN4-211ENST00000488279 C1orf196B1AJZ1 125 aa14.22□□□□□ -0.13
PTPN4-211ENST00000488279 PPP1R2P9O14990 202 aa14.22□□□□□ -0.13
PTPN4-211ENST00000488279 FAM104BQ5XKR9 115 aa14.22□□□□□ -0.13
PTPN4-211ENST00000488279 SMIM27A0A1W2PRY6 76 aa14.21□□□□□ -0.13
PTPN4-211ENST00000488279 C9JQL5 133 aa14.2□□□□□ -0.14
PTPN4-211ENST00000488279 MALP21145 153 aa14.2□□□□□ -0.14
PTPN4-211ENST00000488279 CAMPP49913 170 aa14.2□□□□□ -0.14
PTPN4-211ENST00000488279 PEA15Q15121 130 aa14.2□□□□□ -0.14
PTPN4-211ENST00000488279 MRPL51Q4U2R6 128 aaKnown RBP14.2□□□□□ -0.14
PTPN4-211ENST00000488279 UBE2D4Q9Y2X8 147 aa14.2□□□□□ -0.14
PTPN4-211ENST00000488279 A0A1B0GVG6 124 aa14.19□□□□□ -0.14
PTPN4-211ENST00000488279 LINC00862A6NCI5 91 aa14.19□□□□□ -0.14
PTPN4-211ENST00000488279 MT1HL1P0DM35 61 aa14.19□□□□□ -0.14
PTPN4-211ENST00000488279 SYCNQ0VAF6 134 aa14.19□□□□□ -0.14
PTPN4-211ENST00000488279 A0A1B0GW15 77 aa14.18□□□□□ -0.14
PTPN4-211ENST00000488279 COX7A2LO14548 114 aa14.18□□□□□ -0.14
PTPN4-211ENST00000488279 TMEM18Q96B42 140 aa14.18□□□□□ -0.14
PTPN4-211ENST00000488279 C20orf78Q9BR46 151 aa14.18□□□□□ -0.14
PTPN4-211ENST00000488279 CKS2P33552 79 aa14.17□□□□□ -0.14
PTPN4-211ENST00000488279 SMDT1Q9H4I9 107 aa14.17□□□□□ -0.14
PTPN4-211ENST00000488279 TRBV24-1A0A075B6N3 115 aa14.16□□□□□ -0.14
PTPN4-211ENST00000488279 TRAV13-1A0A0B4J241 112 aa14.16□□□□□ -0.14
PTPN4-211ENST00000488279 SRSF3P84103 164 aaKnown RBP14.16□□□□□ -0.14
PTPN4-211ENST00000488279 RNASE13Q5GAN3 156 aaKnown RBP14.16□□□□□ -0.14
PTPN4-211ENST00000488279 TCAPO15273 167 aa14.15□□□□□ -0.14
PTPN4-211ENST00000488279 PRR3P79522 188 aaKnown RBP14.15□□□□□ -0.14
PTPN4-211ENST00000488279 TIMM21Q9BVV7 248 aa14.15□□□□□ -0.14
PTPN4-211ENST00000488279 IGLV4-69A0A075B6H9 119 aa14.14□□□□□ -0.15
PTPN4-211ENST00000488279 RPL32P62910 135 aaKnown RBP14.14□□□□□ -0.15
PTPN4-211ENST00000488279 F8W036 122 aa14.13□□□□□ -0.15
PTPN4-211ENST00000488279 S100A8P05109 93 aa14.13□□□□□ -0.15
PTPN4-211ENST00000488279 TNFRSF6BO95407 300 aa14.12□□□□□ -0.15
PTPN4-211ENST00000488279 Q6ZUT4 128 aa14.12□□□□□ -0.15
PTPN4-211ENST00000488279 LOC107984640A0A0U1RRK4 108 aa14.11□□□□□ -0.15
PTPN4-211ENST00000488279 APOMO95445 188 aa14.11□□□□□ -0.15
PTPN4-211ENST00000488279 PTTG1IPP53801 180 aa14.11□□□□□ -0.15
PTPN4-211ENST00000488279 HBBP68871 147 aa14.11□□□□□ -0.15
PTPN4-211ENST00000488279 C5orf38Q86SI9 138 aa14.11□□□□□ -0.15
PTPN4-211ENST00000488279 CAMK2N2Q96S95 79 aa14.11□□□□□ -0.15
PTPN4-211ENST00000488279 GAGE2BQ13066 116 aa14.1□□□□□ -0.15
PTPN4-211ENST00000488279 MRPL54Q6P161 138 aaKnown RBP14.1□□□□□ -0.15
PTPN4-211ENST00000488279 UBR4Q5T4S7 5183 aa14.09□□□□□ -0.15
PTPN4-211ENST00000488279 D6R8Y8 96 aa14.09□□□□□ -0.15
PTPN4-211ENST00000488279 C2orf48Q96LS8 159 aa14.09□□□□□ -0.15
PTPN4-211ENST00000488279 SMIM2Q9BVW6 85 aa14.09□□□□□ -0.15
PTPN4-211ENST00000488279 RPL39P62891 51 aaKnown RBP14.08□□□□□ -0.16
PTPN4-211ENST00000488279 A0A1B0GXF2 115 aa14.07□□□□□ -0.16
PTPN4-211ENST00000488279 PPBPP02775 128 aa14.07□□□□□ -0.16
PTPN4-211ENST00000488279 Q6ZRP5 223 aa14.07□□□□□ -0.16
PTPN4-211ENST00000488279 LINC01600Q96MT4 127 aa14.07□□□□□ -0.16
PTPN4-211ENST00000488279 SPANXA1Q9NS26 97 aa14.07□□□□□ -0.16
PTPN4-211ENST00000488279 SPINK6Q6UWN8 80 aa14.06□□□□□ -0.16
PTPN4-211ENST00000488279 NPYP01303 97 aa14.05□□□□□ -0.16
PTPN4-211ENST00000488279 MRPS36P82909 103 aaKnown RBP14.04□□□□□ -0.16
PTPN4-211ENST00000488279 SPAG11BQ08648 103 aa14.04□□□□□ -0.16
PTPN4-211ENST00000488279 OR10D4PQ8NGN7 298 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms