RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 XCL1P47992 114 aa8.6□□□□□ -1.03
SQSTM1-208ENST00000485412 AMMECR1LQ6DCA0 310 aa8.6□□□□□ -1.03
SQSTM1-208ENST00000485412 EIF5A2Q9GZV4 153 aaKnown RBP8.6□□□□□ -1.03
SQSTM1-208ENST00000485412 RPP21Q9H633 154 aaKnown RBP8.6□□□□□ -1.03
SQSTM1-208ENST00000485412 C9JQL5 133 aa8.59□□□□□ -1.03
SQSTM1-208ENST00000485412 PDE6DO43924 150 aa8.59□□□□□ -1.03
SQSTM1-208ENST00000485412 APCSP02743 223 aa8.59□□□□□ -1.03
SQSTM1-208ENST00000485412 SEC11CQ9BY50 192 aa8.59□□□□□ -1.03
SQSTM1-208ENST00000485412 SDHAF1A6NFY7 115 aa8.58□□□□□ -1.04
SQSTM1-208ENST00000485412 APOC3P02656 99 aa8.58□□□□□ -1.04
SQSTM1-208ENST00000485412 OCC1Q8TAD7 63 aa8.58□□□□□ -1.04
SQSTM1-208ENST00000485412 CARHSP1Q9Y2V2 147 aaKnown RBP8.58□□□□□ -1.04
SQSTM1-208ENST00000485412 CCL25O15444 150 aa8.57□□□□□ -1.04
SQSTM1-208ENST00000485412 NCR2O95944 276 aa8.57□□□□□ -1.04
SQSTM1-208ENST00000485412 SRP19P09132 144 aaKnown RBP8.57□□□□□ -1.04
SQSTM1-208ENST00000485412 ADCYAP1P18509 176 aa8.57□□□□□ -1.04
SQSTM1-208ENST00000485412 FAM74A3Q4VXF1 159 aa8.57□□□□□ -1.04
SQSTM1-208ENST00000485412 OR5A1Q8NGJ0 315 aa8.57□□□□□ -1.04
SQSTM1-208ENST00000485412 LINC00959A0A1B0GUT2 108 aa8.56□□□□□ -1.04
SQSTM1-208ENST00000485412 TSHBP01222 138 aa8.56□□□□□ -1.04
SQSTM1-208ENST00000485412 TMEM242Q9NWH2 141 aa8.56□□□□□ -1.04
SQSTM1-208ENST00000485412 F8W036 122 aa8.55□□□□□ -1.04
SQSTM1-208ENST00000485412 TMEM250H0YL14 139 aa8.55□□□□□ -1.04
SQSTM1-208ENST00000485412 ESDP10768 282 aa8.55□□□□□ -1.04
SQSTM1-208ENST00000485412 SRSF9Q13242 221 aaKnown RBP eCLIP8.55□□□□□ -1.04
SQSTM1-208ENST00000485412 Q6ZRP5 223 aa8.55□□□□□ -1.04
SQSTM1-208ENST00000485412 CARD19Q96LW7 228 aa8.55□□□□□ -1.04
SQSTM1-208ENST00000485412 BIN3Q9NQY0 253 aa8.55□□□□□ -1.04
SQSTM1-208ENST00000485412 LINC00474Q9P2X8 69 aa8.55□□□□□ -1.04
SQSTM1-208ENST00000485412 H7C423 109 aa8.54□□□□□ -1.04
SQSTM1-208ENST00000485412 PKIGQ9Y2B9 76 aa8.54□□□□□ -1.04
SQSTM1-208ENST00000485412 IGHV1-58A0A0C4DH39 117 aa8.53□□□□□ -1.04
SQSTM1-208ENST00000485412 I3L3M4 83 aa8.53□□□□□ -1.04
SQSTM1-208ENST00000485412 ZNF25P17030 456 aaPredicted RBP8.53□□□□□ -1.04
SQSTM1-208ENST00000485412 PMCHP20382 165 aa8.53□□□□□ -1.04
SQSTM1-208ENST00000485412 SVBPQ8N300 66 aa8.53□□□□□ -1.04
SQSTM1-208ENST00000485412 TRBV6-5A0A0K0K1A5 114 aa8.52□□□□□ -1.05
SQSTM1-208ENST00000485412 A0A1W2PNN7 141 aa8.52□□□□□ -1.05
SQSTM1-208ENST00000485412 GATCO43716 136 aaKnown RBP8.51□□□□□ -1.05
SQSTM1-208ENST00000485412 SNAPINO95295 136 aa8.51□□□□□ -1.05
SQSTM1-208ENST00000485412 PTTG1IPP53801 180 aa8.51□□□□□ -1.05
SQSTM1-208ENST00000485412 SYCNQ0VAF6 134 aa8.51□□□□□ -1.05
SQSTM1-208ENST00000485412 RNASE13Q5GAN3 156 aaKnown RBP8.51□□□□□ -1.05
SQSTM1-208ENST00000485412 CDC42SE2Q9NRR3 84 aa8.51□□□□□ -1.05
SQSTM1-208ENST00000485412 IGLV4-69A0A075B6H9 119 aa8.5□□□□□ -1.05
SQSTM1-208ENST00000485412 CAMPP49913 170 aa8.5□□□□□ -1.05
SQSTM1-208ENST00000485412 GAGE2BQ13066 116 aa8.5□□□□□ -1.05
SQSTM1-208ENST00000485412 CD164L2Q6UWJ8 174 aa8.5□□□□□ -1.05
SQSTM1-208ENST00000485412 SMIM15Q7Z3B0 74 aa8.5□□□□□ -1.05
SQSTM1-208ENST00000485412 MRAP2Q96G30 205 aa8.5□□□□□ -1.05
SQSTM1-208ENST00000485412 TMEM101Q96IK0 257 aa8.5□□□□□ -1.05
SQSTM1-208ENST00000485412 BTF3L4Q96K17 158 aa8.5□□□□□ -1.05
SQSTM1-208ENST00000485412 SMKR1H3BMG3 65 aa8.49□□□□□ -1.05
SQSTM1-208ENST00000485412 POLR2KP53803 58 aaKnown RBP8.49□□□□□ -1.05
SQSTM1-208ENST00000485412 MRPL52Q86TS9 123 aaKnown RBP8.49□□□□□ -1.05
SQSTM1-208ENST00000485412 ZNF664Q8N3J9 261 aa8.49□□□□□ -1.05
SQSTM1-208ENST00000485412 ST20Q9HBF5 79 aa8.49□□□□□ -1.05
SQSTM1-208ENST00000485412 ZNF561-AS1K7EIQ3 104 aa8.48□□□□□ -1.05
SQSTM1-208ENST00000485412 PNRC1Q12796 327 aaPredicted RBP8.48□□□□□ -1.05
SQSTM1-208ENST00000485412 SS18Q15532 418 aa8.48□□□□□ -1.05
SQSTM1-208ENST00000485412 FAM231DQ6ZW35 169 aa8.48□□□□□ -1.05
SQSTM1-208ENST00000485412 CBLN2Q8IUK8 224 aa8.48□□□□□ -1.05
SQSTM1-208ENST00000485412 AMN1Q8IY45 258 aa8.48□□□□□ -1.05
SQSTM1-208ENST00000485412 C7orf77A4D0Y5 90 aa8.47□□□□□ -1.05
SQSTM1-208ENST00000485412 ZNF727A8MUV8 499 aa8.47□□□□□ -1.05
SQSTM1-208ENST00000485412 A8MWL6 223 aa8.47□□□□□ -1.05
SQSTM1-208ENST00000485412 RAB4AP20338 218 aa8.47□□□□□ -1.05
SQSTM1-208ENST00000485412 CEBPGP53567 150 aa8.47□□□□□ -1.05
SQSTM1-208ENST00000485412 TMEM241Q24JQ0 296 aa8.47□□□□□ -1.05
SQSTM1-208ENST00000485412 NUP35Q8NFH5 326 aa8.47□□□□□ -1.05
SQSTM1-208ENST00000485412 PSORS1C2Q9UIG4 136 aa8.47□□□□□ -1.05
SQSTM1-208ENST00000485412 TRBV27A0A0K0K1C4 114 aa8.46□□□□□ -1.06
SQSTM1-208ENST00000485412 LOC107984640A0A0U1RRK4 108 aa8.46□□□□□ -1.06
SQSTM1-208ENST00000485412 HIGD1CA8MV81 97 aa8.46□□□□□ -1.06
SQSTM1-208ENST00000485412 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.46□□□□□ -1.06
SQSTM1-208ENST00000485412 RHEBQ15382 184 aa8.46□□□□□ -1.06
SQSTM1-208ENST00000485412 C9orf116Q5BN46 136 aaPredicted RBP8.46□□□□□ -1.06
SQSTM1-208ENST00000485412 SMIM7Q9BQ49 75 aa8.46□□□□□ -1.06
SQSTM1-208ENST00000485412 NAT8Q9UHE5 227 aa8.46□□□□□ -1.06
SQSTM1-208ENST00000485412 Q6ZUT4 128 aa8.45□□□□□ -1.06
SQSTM1-208ENST00000485412 PHF5AQ7RTV0 110 aaKnown RBP8.45□□□□□ -1.06
SQSTM1-208ENST00000485412 C5orf38Q86SI9 138 aa8.45□□□□□ -1.06
SQSTM1-208ENST00000485412 KRTAP11-1Q8IUC1 163 aa8.45□□□□□ -1.06
SQSTM1-208ENST00000485412 NRACQ8N912 160 aa8.45□□□□□ -1.06
SQSTM1-208ENST00000485412 OPRPNQ99935 248 aaPredicted RBP8.45□□□□□ -1.06
SQSTM1-208ENST00000485412 TMEM191AQ9H0A3 160 aa8.45□□□□□ -1.06
SQSTM1-208ENST00000485412 UBE2D4Q9Y2X8 147 aa8.45□□□□□ -1.06
SQSTM1-208ENST00000485412 TRAV13-1A0A0B4J241 112 aa8.44□□□□□ -1.06
SQSTM1-208ENST00000485412 A0A1B0GUT8 65 aa8.44□□□□□ -1.06
SQSTM1-208ENST00000485412 COX7A2LO14548 114 aa8.44□□□□□ -1.06
SQSTM1-208ENST00000485412 MT-ND6P03923 174 aa8.44□□□□□ -1.06
SQSTM1-208ENST00000485412 CT83Q5H943 113 aa8.44□□□□□ -1.06
SQSTM1-208ENST00000485412 CAMK2N2Q96S95 79 aa8.44□□□□□ -1.06
SQSTM1-208ENST00000485412 APOMO95445 188 aa8.43□□□□□ -1.06
SQSTM1-208ENST00000485412 MALP21145 153 aa8.43□□□□□ -1.06
SQSTM1-208ENST00000485412 RPL18AQ02543 176 aaKnown RBP8.43□□□□□ -1.06
SQSTM1-208ENST00000485412 LINC01551Q86U37 167 aa8.43□□□□□ -1.06
SQSTM1-208ENST00000485412 TSKUQ8WUA8 353 aa8.43□□□□□ -1.06
SQSTM1-208ENST00000485412 MUC2Q02817 5179 aa8.42□□□□□ -1.06
SQSTM1-208ENST00000485412 C1orf196B1AJZ1 125 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms