RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 SCN3AQ9NY46 2000 aa2.83□□□□□ -1.96
CCDC88A-210ENST00000468534 KIAA2026Q5HYC2 2103 aa2.83□□□□□ -1.96
CCDC88A-210ENST00000468534 WIZO95785 1651 aa2.83□□□□□ -1.96
CCDC88A-210ENST00000468534 NUPR2A6NF83 97 aa2.83□□□□□ -1.96
CCDC88A-210ENST00000468534 HIGD1CA8MV81 97 aa2.83□□□□□ -1.96
CCDC88A-210ENST00000468534 PDE6HQ13956 83 aa2.83□□□□□ -1.96
CCDC88A-210ENST00000468534 LYPD1Q8N2G4 141 aa2.83□□□□□ -1.96
CCDC88A-210ENST00000468534 TOMM5Q8N4H5 51 aa2.83□□□□□ -1.96
CCDC88A-210ENST00000468534 MRPL36Q9P0J6 103 aaKnown RBP2.83□□□□□ -1.96
CCDC88A-210ENST00000468534 EHBP1L1Q8N3D4 1523 aa2.83□□□□□ -1.96
CCDC88A-210ENST00000468534 BIVM-ERCC5R4GMW8 1640 aa2.82□□□□□ -1.96
CCDC88A-210ENST00000468534 AFDNP55196 1824 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-210ENST00000468534 IGLV4-69A0A075B6H9 119 aa2.82□□□□□ -1.96
CCDC88A-210ENST00000468534 LEPROTL1O95214 131 aa2.82□□□□□ -1.96
CCDC88A-210ENST00000468534 GTF3C1Q12789 2109 aa2.82□□□□□ -1.96
CCDC88A-210ENST00000468534 NUMA1Q14980 2115 aa2.82□□□□□ -1.96
CCDC88A-210ENST00000468534 ATXN8Q156A1 80 aa2.82□□□□□ -1.96
CCDC88A-210ENST00000468534 CABIN1Q9Y6J0 2220 aa2.82□□□□□ -1.96
CCDC88A-210ENST00000468534 IQGAP2Q13576 1575 aa2.82□□□□□ -1.96
CCDC88A-210ENST00000468534 PAPPAQ13219 1627 aa2.82□□□□□ -1.96
CCDC88A-210ENST00000468534 USP32Q8NFA0 1604 aa2.82□□□□□ -1.96
CCDC88A-210ENST00000468534 ABCA5Q8WWZ7 1642 aa2.82□□□□□ -1.96
CCDC88A-210ENST00000468534 MED13Q9UHV7 2174 aa2.81□□□□□ -1.96
CCDC88A-210ENST00000468534 HCRTO43612 131 aa2.81□□□□□ -1.96
CCDC88A-210ENST00000468534 Q86TA4 180 aa2.81□□□□□ -1.96
CCDC88A-210ENST00000468534 Q9BRP9 147 aa2.81□□□□□ -1.96
CCDC88A-210ENST00000468534 HIGD2AQ9BW72 106 aa2.81□□□□□ -1.96
CCDC88A-210ENST00000468534 PRO2289Q9P1D8 64 aa2.81□□□□□ -1.96
CCDC88A-210ENST00000468534 PSORS1C2Q9UIG4 136 aa2.81□□□□□ -1.96
CCDC88A-210ENST00000468534 CEP170BQ9Y4F5 1589 aaPredicted RBP2.81□□□□□ -1.96
CCDC88A-210ENST00000468534 TRPM7Q96QT4 1865 aa2.81□□□□□ -1.96
CCDC88A-210ENST00000468534 NACAE9PAV3 2078 aa2.81□□□□□ -1.96
CCDC88A-210ENST00000468534 PDCD11Q14690 1871 aaKnown RBP2.8□□□□□ -1.96
CCDC88A-210ENST00000468534 IGKV3-7A0A075B6H7 116 aa2.8□□□□□ -1.96
CCDC88A-210ENST00000468534 A0A0J9YY99 117 aa2.8□□□□□ -1.96
CCDC88A-210ENST00000468534 D6R8Y8 96 aa2.8□□□□□ -1.96
CCDC88A-210ENST00000468534 IGHV3-30P01768 117 aa2.8□□□□□ -1.96
CCDC88A-210ENST00000468534 IGHV3-30-5P0DP03 117 aa2.8□□□□□ -1.96
CCDC88A-210ENST00000468534 S100A3P33764 101 aa2.8□□□□□ -1.96
CCDC88A-210ENST00000468534 GDF5OSQ5U4N7 250 aa2.8□□□□□ -1.96
CCDC88A-210ENST00000468534 MUSTN1Q8IVN3 82 aa2.8□□□□□ -1.96
CCDC88A-210ENST00000468534 ORMDL1Q9P0S3 153 aa2.8□□□□□ -1.96
CCDC88A-210ENST00000468534 AGLP35573 1532 aa2.79□□□□□ -1.96
CCDC88A-210ENST00000468534 SPAG11BQ08648 103 aa2.79□□□□□ -1.96
CCDC88A-210ENST00000468534 SPAG11AQ6PDA7 123 aa2.79□□□□□ -1.96
CCDC88A-210ENST00000468534 PRR15LQ9BU68 103 aa2.79□□□□□ -1.96
CCDC88A-210ENST00000468534 LCE3DQ9BYE3 92 aa2.79□□□□□ -1.96
CCDC88A-210ENST00000468534 R4GN34 69 aa2.79□□□□□ -1.96
CCDC88A-210ENST00000468534 ARFGEF1Q9Y6D6 1849 aa2.79□□□□□ -1.96
CCDC88A-210ENST00000468534 CDC42BPAQ5VT25 1732 aa2.79□□□□□ -1.96
CCDC88A-210ENST00000468534 NESP48681 1621 aa2.79□□□□□ -1.96
CCDC88A-210ENST00000468534 ALKQ9UM73 1620 aa2.79□□□□□ -1.96
CCDC88A-210ENST00000468534 CPAMD8Q8IZJ3 1885 aa2.78□□□□□ -1.96
CCDC88A-210ENST00000468534 TRBV7-4A0A0J9YYF1 115 aa2.78□□□□□ -1.96
CCDC88A-210ENST00000468534 PPP1R17O96001 155 aa2.78□□□□□ -1.96
CCDC88A-210ENST00000468534 HMGA1P17096 107 aaKnown RBP2.78□□□□□ -1.96
CCDC88A-210ENST00000468534 SSBP1Q04837 148 aaKnown RBP2.78□□□□□ -1.96
CCDC88A-210ENST00000468534 NCBP2-AS2Q69YL0 99 aa2.78□□□□□ -1.96
CCDC88A-210ENST00000468534 SPINT4Q6UDR6 99 aa2.78□□□□□ -1.96
CCDC88A-210ENST00000468534 AMELXQ99217 191 aa2.78□□□□□ -1.96
CCDC88A-210ENST00000468534 ARHGEF5Q12774 1597 aa2.78□□□□□ -1.96
CCDC88A-210ENST00000468534 CPS1P31327 1500 aa2.78□□□□□ -1.97
CCDC88A-210ENST00000468534 EFCAB6Q5THR3 1501 aa2.78□□□□□ -1.97
CCDC88A-210ENST00000468534 IGKV1-17P01599 117 aa2.77□□□□□ -1.97
CCDC88A-210ENST00000468534 PATE1Q8WXA2 126 aa2.77□□□□□ -1.97
CCDC88A-210ENST00000468534 SNURFQ9Y675 71 aa2.77□□□□□ -1.97
CCDC88A-210ENST00000468534 FREM3P0C091 2139 aa2.77□□□□□ -1.97
CCDC88A-210ENST00000468534 LOC285556D6RIA3 1793 aa2.77□□□□□ -1.97
CCDC88A-210ENST00000468534 PLCH1Q4KWH8 1693 aa2.76□□□□□ -1.97
CCDC88A-210ENST00000468534 TRBV6-5A0A0K0K1A5 114 aa2.76□□□□□ -1.97
CCDC88A-210ENST00000468534 LINC01549A6NIU2 74 aa2.76□□□□□ -1.97
CCDC88A-210ENST00000468534 FAM74A4Q5TZK3 123 aa2.76□□□□□ -1.97
CCDC88A-210ENST00000468534 PP632Q6XCG6 107 aa2.76□□□□□ -1.97
CCDC88A-210ENST00000468534 Q6ZTI0 123 aa2.76□□□□□ -1.97
CCDC88A-210ENST00000468534 PPP1R1CQ8WVI7 109 aa2.76□□□□□ -1.97
CCDC88A-210ENST00000468534 C4orf3Q8WVX3 66 aa2.76□□□□□ -1.97
CCDC88A-210ENST00000468534 NMES1Q9C002 83 aa2.76□□□□□ -1.97
CCDC88A-210ENST00000468534 LAMB2P55268 1798 aa2.75□□□□□ -1.97
CCDC88A-210ENST00000468534 NFAT5O94916 1531 aa2.75□□□□□ -1.97
CCDC88A-210ENST00000468534 CTSGP08311 255 aa2.75□□□□□ -1.97
CCDC88A-210ENST00000468534 NHSQ6T4R5 1651 aa2.75□□□□□ -1.97
CCDC88A-210ENST00000468534 DIDO1Q9BTC0 2240 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-210ENST00000468534 NWD1Q149M9 1564 aa2.74□□□□□ -1.97
CCDC88A-210ENST00000468534 ZMYM4Q5VZL5 1548 aa2.74□□□□□ -1.97
CCDC88A-210ENST00000468534 NUP188Q5SRE5 1749 aa2.74□□□□□ -1.97
CCDC88A-210ENST00000468534 DLG5Q8TDM6 1919 aa2.74□□□□□ -1.97
CCDC88A-210ENST00000468534 MRC1P22897 1456 aa2.74□□□□□ -1.97
CCDC88A-210ENST00000468534 CCL3L1P16619 93 aa2.74□□□□□ -1.97
CCDC88A-210ENST00000468534 ZNF563Q8TA94 476 aa2.74□□□□□ -1.97
CCDC88A-210ENST00000468534 SMIM4Q8WVI0 70 aa2.74□□□□□ -1.97
CCDC88A-210ENST00000468534 TTTY12Q9BZ98 90 aa2.74□□□□□ -1.97
CCDC88A-210ENST00000468534 PLAC8Q9NZF1 115 aa2.74□□□□□ -1.97
CCDC88A-210ENST00000468534 CICQ96RK0 1608 aaPredicted RBP2.74□□□□□ -1.97
CCDC88A-210ENST00000468534 LAMA4Q16363 1823 aa2.73□□□□□ -1.97
CCDC88A-210ENST00000468534 LRRC37A3O60309 1634 aa2.73□□□□□ -1.97
CCDC88A-210ENST00000468534 LRP6O75581 1613 aa2.73□□□□□ -1.97
CCDC88A-210ENST00000468534 A0A087WVE0 104 aa2.73□□□□□ -1.97
CCDC88A-210ENST00000468534 F8VRH5 84 aa2.73□□□□□ -1.97
CCDC88A-210ENST00000468534 PRH1P02810 166 aa2.73□□□□□ -1.97
CCDC88A-210ENST00000468534 FDCSPQ8NFU4 85 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms