RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 IGHV3-30P01768 117 aa7.99□□□□□ -1.13
VPS52-213ENST00000461743 IGHV3-33P01772 117 aa7.99□□□□□ -1.13
VPS52-213ENST00000461743 IGHV3-30-3P0DP02 117 aa7.99□□□□□ -1.13
VPS52-213ENST00000461743 IGHV3-30-5P0DP03 117 aa7.99□□□□□ -1.13
VPS52-213ENST00000461743 PET117Q6UWS5 81 aa7.99□□□□□ -1.13
VPS52-213ENST00000461743 GATD1Q8NB37 220 aa7.99□□□□□ -1.13
VPS52-213ENST00000461743 MRAP2Q96G30 205 aa7.99□□□□□ -1.13
VPS52-213ENST00000461743 DNAH5Q8TE73 4624 aa7.99□□□□□ -1.13
VPS52-213ENST00000461743 IGHV1-24A0A0C4DH33 117 aa7.98□□□□□ -1.13
VPS52-213ENST00000461743 TRBV6-5A0A0K0K1A5 114 aa7.98□□□□□ -1.13
VPS52-213ENST00000461743 HINT1P49773 126 aaPredicted RBP7.98□□□□□ -1.13
VPS52-213ENST00000461743 ATP5L2Q7Z4Y8 100 aa7.98□□□□□ -1.13
VPS52-213ENST00000461743 TRAV26-2A0A0B4J265 109 aa7.97□□□□□ -1.13
VPS52-213ENST00000461743 NCR2O95944 276 aa7.97□□□□□ -1.13
VPS52-213ENST00000461743 PPP1R17O96001 155 aa7.97□□□□□ -1.13
VPS52-213ENST00000461743 APCSP02743 223 aa7.97□□□□□ -1.13
VPS52-213ENST00000461743 RMI2Q96E14 147 aa7.97□□□□□ -1.13
VPS52-213ENST00000461743 CHCHD5Q9BSY4 110 aa7.97□□□□□ -1.13
VPS52-213ENST00000461743 TM2D2Q9BX73 214 aa7.97□□□□□ -1.13
VPS52-213ENST00000461743 ST20Q9HBF5 79 aa7.97□□□□□ -1.13
VPS52-213ENST00000461743 HBBP68871 147 aa7.96□□□□□ -1.14
VPS52-213ENST00000461743 NTM-AS1Q6ZSK4 140 aa7.96□□□□□ -1.14
VPS52-213ENST00000461743 A0A1B0GXF2 115 aa7.95□□□□□ -1.14
VPS52-213ENST00000461743 SDHAF1A6NFY7 115 aa7.95□□□□□ -1.14
VPS52-213ENST00000461743 PSCAO43653 123 aa7.95□□□□□ -1.14
VPS52-213ENST00000461743 VAMP3Q15836 100 aa7.95□□□□□ -1.14
VPS52-213ENST00000461743 MPV17L2Q567V2 206 aa7.95□□□□□ -1.14
VPS52-213ENST00000461743 AMN1Q8IY45 258 aa7.95□□□□□ -1.14
VPS52-213ENST00000461743 Q8N3U1 123 aa7.95□□□□□ -1.14
VPS52-213ENST00000461743 RPL39LQ96EH5 51 aaKnown RBP7.95□□□□□ -1.14
VPS52-213ENST00000461743 RNF185Q96GF1 192 aa7.95□□□□□ -1.14
VPS52-213ENST00000461743 TMEM243Q9BU79 118 aa7.95□□□□□ -1.14
VPS52-213ENST00000461743 Q9HAA7 133 aa7.95□□□□□ -1.14
VPS52-213ENST00000461743 LRP1BQ9NZR2 4599 aa7.94□□□□□ -1.14
VPS52-213ENST00000461743 TMEM262E9PQX1 116 aa7.94□□□□□ -1.14
VPS52-213ENST00000461743 CRPP02741 224 aa7.94□□□□□ -1.14
VPS52-213ENST00000461743 RNF151Q2KHN1 245 aa7.94□□□□□ -1.14
VPS52-213ENST00000461743 OCIAD2Q56VL3 154 aa7.94□□□□□ -1.14
VPS52-213ENST00000461743 FAM104BQ5XKR9 115 aa7.94□□□□□ -1.14
VPS52-213ENST00000461743 C18orf32Q8TCD1 76 aa7.94□□□□□ -1.14
VPS52-213ENST00000461743 A0A087WTM6 91 aa7.93□□□□□ -1.14
VPS52-213ENST00000461743 A0A1B0GUV1 79 aa7.93□□□□□ -1.14
VPS52-213ENST00000461743 H7C423 109 aa7.93□□□□□ -1.14
VPS52-213ENST00000461743 I3L3M4 83 aa7.93□□□□□ -1.14
VPS52-213ENST00000461743 K7ERU9 68 aa7.93□□□□□ -1.14
VPS52-213ENST00000461743 UBE2L6O14933 153 aa7.93□□□□□ -1.14
VPS52-213ENST00000461743 HSBP1O75506 76 aa7.93□□□□□ -1.14
VPS52-213ENST00000461743 VPS25Q9BRG1 176 aa7.93□□□□□ -1.14
VPS52-213ENST00000461743 CST9LQ9H4G1 147 aa7.93□□□□□ -1.14
VPS52-213ENST00000461743 KLK12Q9UKR0 248 aa7.93□□□□□ -1.14
VPS52-213ENST00000461743 TRBV27A0A0K0K1C4 114 aa7.92□□□□□ -1.14
VPS52-213ENST00000461743 TAX1BP3O14907 124 aa7.92□□□□□ -1.14
VPS52-213ENST00000461743 ANGP03950 147 aaKnown RBP7.92□□□□□ -1.14
VPS52-213ENST00000461743 CAMPP49913 170 aa7.92□□□□□ -1.14
VPS52-213ENST00000461743 MIAQ16674 131 aa7.92□□□□□ -1.14
VPS52-213ENST00000461743 KIAA1644Q3SXP7 199 aa7.92□□□□□ -1.14
VPS52-213ENST00000461743 MRPL54Q6P161 138 aaKnown RBP7.92□□□□□ -1.14
VPS52-213ENST00000461743 SPATA12Q7Z6I5 190 aa7.92□□□□□ -1.14
VPS52-213ENST00000461743 PMCHL2Q9BQD1 86 aa7.92□□□□□ -1.14
VPS52-213ENST00000461743 TMEM70Q9BUB7 260 aa7.92□□□□□ -1.14
VPS52-213ENST00000461743 CHTOPQ9Y3Y2 248 aaKnown RBP7.92□□□□□ -1.14
VPS52-213ENST00000461743 C16orf90A8MZG2 172 aa7.91□□□□□ -1.14
VPS52-213ENST00000461743 POLR2KP53803 58 aaKnown RBP7.91□□□□□ -1.14
VPS52-213ENST00000461743 RPL32P62910 135 aaKnown RBP7.91□□□□□ -1.14
VPS52-213ENST00000461743 GAGE6Q13070 117 aa7.91□□□□□ -1.14
VPS52-213ENST00000461743 MRPL51Q4U2R6 128 aaKnown RBP7.91□□□□□ -1.14
VPS52-213ENST00000461743 BVES-AS1Q5T3Y7 98 aa7.91□□□□□ -1.14
VPS52-213ENST00000461743 NTN5Q8WTR8 489 aaPredicted RBP7.91□□□□□ -1.14
VPS52-213ENST00000461743 UBE2WQ96B02 151 aa7.91□□□□□ -1.14
VPS52-213ENST00000461743 CHCHD1Q96BP2 118 aaKnown RBP7.91□□□□□ -1.14
VPS52-213ENST00000461743 C1orf43Q9BWL3 253 aa7.91□□□□□ -1.14
VPS52-213ENST00000461743 PRR34Q9NV39 138 aa7.91□□□□□ -1.14
VPS52-213ENST00000461743 LRCOL1A6NCL2 159 aa7.9□□□□□ -1.14
VPS52-213ENST00000461743 SUMO2P61956 95 aaKnown RBP7.9□□□□□ -1.14
VPS52-213ENST00000461743 SLC25A34Q6PIV7 304 aa7.9□□□□□ -1.14
VPS52-213ENST00000461743 ATOH7Q8N100 152 aa7.9□□□□□ -1.14
VPS52-213ENST00000461743 FAM19A2Q8N3H0 131 aa7.9□□□□□ -1.14
VPS52-213ENST00000461743 NRACQ8N912 160 aa7.9□□□□□ -1.14
VPS52-213ENST00000461743 C20orf78Q9BR46 151 aa7.9□□□□□ -1.14
VPS52-213ENST00000461743 PGPEP1Q9NXJ5 209 aa7.9□□□□□ -1.14
VPS52-213ENST00000461743 IGKV2D-24A0A075B6R9 120 aa7.89□□□□□ -1.15
VPS52-213ENST00000461743 HSBP1L1C9JCN9 74 aa7.89□□□□□ -1.15
VPS52-213ENST00000461743 CKS2P33552 79 aa7.89□□□□□ -1.15
VPS52-213ENST00000461743 MAJINQ3KP22 176 aa7.89□□□□□ -1.15
VPS52-213ENST00000461743 RNASEKQ6P5S7 137 aaKnown RBP7.89□□□□□ -1.15
VPS52-213ENST00000461743 Q6ZVH6 145 aa7.89□□□□□ -1.15
VPS52-213ENST00000461743 VCYO14598 125 aa7.88□□□□□ -1.15
VPS52-213ENST00000461743 GAS8-AS1O95177 125 aa7.88□□□□□ -1.15
VPS52-213ENST00000461743 TSHBP01222 138 aa7.88□□□□□ -1.15
VPS52-213ENST00000461743 KRTAP10-2P60368 255 aa7.88□□□□□ -1.15
VPS52-213ENST00000461743 SEC11AP67812 179 aa7.88□□□□□ -1.15
VPS52-213ENST00000461743 SMAGPQ0VAQ4 97 aa7.88□□□□□ -1.15
VPS52-213ENST00000461743 ENHOQ6UWT2 76 aa7.88□□□□□ -1.15
VPS52-213ENST00000461743 Q8N814 137 aa7.88□□□□□ -1.15
VPS52-213ENST00000461743 C20orf203Q8NBC4 194 aa7.88□□□□□ -1.15
VPS52-213ENST00000461743 KIR2DL4Q99706 377 aa7.88□□□□□ -1.15
VPS52-213ENST00000461743 APOBP04114 4563 aaKnown RBP7.88□□□□□ -1.15
VPS52-213ENST00000461743 TRAV8-4A0A0B4J246 113 aa7.87□□□□□ -1.15
VPS52-213ENST00000461743 D6R8Y8 96 aa7.87□□□□□ -1.15
VPS52-213ENST00000461743 SMKR1H3BMG3 65 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms