RNA–Protein interactions for RNA: ENST00000460120.5

HPS3-202, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 2 BASIC

Gene HPS3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-202ENST00000460120 NDUFA12Q9UI09 145 aa13.06□□□□□ -0.32
HPS3-202ENST00000460120 GAGE12HA6NDE8 117 aa13.05□□□□□ -0.32
HPS3-202ENST00000460120 GAGE12JA6NER3 117 aa13.05□□□□□ -0.32
HPS3-202ENST00000460120 GAGE4Q13068 117 aa13.05□□□□□ -0.32
HPS3-202ENST00000460120 GAGE5Q13069 117 aa13.05□□□□□ -0.32
HPS3-202ENST00000460120 ADAMTSL4-AS1Q5T5F5 129 aa13.05□□□□□ -0.32
HPS3-202ENST00000460120 LINC00694P0DN24 101 aa13.05□□□□□ -0.32
HPS3-202ENST00000460120 SHISA2Q6UWI4 295 aa13.05□□□□□ -0.32
HPS3-202ENST00000460120 UBE2D3P61077 147 aa13.04□□□□□ -0.32
HPS3-202ENST00000460120 UBE2D2P62837 147 aa13.04□□□□□ -0.32
HPS3-202ENST00000460120 LINC01006Q8NI28 216 aa13.04□□□□□ -0.32
HPS3-202ENST00000460120 ZNF625Q96I27 306 aaPredicted RBP13.04□□□□□ -0.32
HPS3-202ENST00000460120 CDKN2A-AS1Q9UH64 79 aa13.04□□□□□ -0.32
HPS3-202ENST00000460120 PDZD2O15018 2839 aa13.04□□□□□ -0.32
HPS3-202ENST00000460120 EDA2RQ9HAV5 297 aa13.04□□□□□ -0.32
HPS3-202ENST00000460120 IGHV1-58A0A0C4DH39 117 aa13.03□□□□□ -0.32
HPS3-202ENST00000460120 BEAN1Q3B7T3 259 aa13.03□□□□□ -0.32
HPS3-202ENST00000460120 TMEM86BQ8N661 226 aa13.03□□□□□ -0.32
HPS3-202ENST00000460120 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.03□□□□□ -0.32
HPS3-202ENST00000460120 SPANXA1Q9NS26 97 aa13.03□□□□□ -0.32
HPS3-202ENST00000460120 TRAV13-1A0A0B4J241 112 aa13.03□□□□□ -0.32
HPS3-202ENST00000460120 COX6A2Q02221 97 aa13.03□□□□□ -0.32
HPS3-202ENST00000460120 FHL3Q13643 280 aa13.03□□□□□ -0.32
HPS3-202ENST00000460120 SMR3AQ99954 134 aa13.02□□□□□ -0.32
HPS3-202ENST00000460120 GAGE7O76087 117 aa13.02□□□□□ -0.33
HPS3-202ENST00000460120 GAGE12FP0CL80 117 aa13.02□□□□□ -0.33
HPS3-202ENST00000460120 GAGE12GP0CL81 117 aa13.02□□□□□ -0.33
HPS3-202ENST00000460120 GAGE12IP0CL82 117 aa13.02□□□□□ -0.33
HPS3-202ENST00000460120 VSIG2Q96IQ7 327 aa13.02□□□□□ -0.33
HPS3-202ENST00000460120 ERG28Q9UKR5 140 aa13.02□□□□□ -0.33
HPS3-202ENST00000460120 TMEM263Q8WUH6 116 aaKnown RBP13.01□□□□□ -0.33
HPS3-202ENST00000460120 LOC100131303A0A0U1RQF7 123 aa13.01□□□□□ -0.33
HPS3-202ENST00000460120 TINCRA0A1B0GVN0 87 aa13.01□□□□□ -0.33
HPS3-202ENST00000460120 J3QR89 54 aa13.01□□□□□ -0.33
HPS3-202ENST00000460120 HELZ2Q9BYK8 2649 aaKnown RBP13□□□□□ -0.33
HPS3-202ENST00000460120 IGHV3-33P01772 117 aa13□□□□□ -0.33
HPS3-202ENST00000460120 TRGV2A0A075B6R0 118 aa12.99□□□□□ -0.33
HPS3-202ENST00000460120 DNAJC30Q96LL9 226 aa12.99□□□□□ -0.33
HPS3-202ENST00000460120 LITAFQ99732 161 aa12.99□□□□□ -0.33
HPS3-202ENST00000460120 FASNP49327 2511 aaKnown RBP12.99□□□□□ -0.33
HPS3-202ENST00000460120 NOTCH2Q04721 2471 aa12.99□□□□□ -0.33
HPS3-202ENST00000460120 IGKV3OR2-268A0A0C4DH90 116 aa12.99□□□□□ -0.33
HPS3-202ENST00000460120 KRTAP1-1Q07627 177 aa12.99□□□□□ -0.33
HPS3-202ENST00000460120 SS18L2Q9UHA2 77 aa12.99□□□□□ -0.33
HPS3-202ENST00000460120 C1QTNF4Q9BXJ3 329 aa12.98□□□□□ -0.33
HPS3-202ENST00000460120 K7EQD1 137 aa12.98□□□□□ -0.33
HPS3-202ENST00000460120 RPL36AP83881 106 aaKnown RBP12.98□□□□□ -0.33
HPS3-202ENST00000460120 LYRM7Q5U5X0 104 aa12.98□□□□□ -0.33
HPS3-202ENST00000460120 NTM-AS1Q6ZSK4 140 aa12.98□□□□□ -0.33
HPS3-202ENST00000460120 RPL36ALQ969Q0 106 aaKnown RBP12.98□□□□□ -0.33
HPS3-202ENST00000460120 TRAV25A0A0B4J276 109 aa12.97□□□□□ -0.33
HPS3-202ENST00000460120 PIK3CD-AS1Q5SR53 167 aa12.97□□□□□ -0.33
HPS3-202ENST00000460120 C9JAW5 83 aa12.97□□□□□ -0.33
HPS3-202ENST00000460120 GIG44P09565 113 aaPredicted RBP12.97□□□□□ -0.33
HPS3-202ENST00000460120 FOXI1Q12951 378 aa12.97□□□□□ -0.33
HPS3-202ENST00000460120 TMEM101Q96IK0 257 aa12.96□□□□□ -0.33
HPS3-202ENST00000460120 FN1P02751 2386 aaKnown RBP12.96□□□□□ -0.34
HPS3-202ENST00000460120 NBEAL2Q6ZNJ1 2754 aa12.95□□□□□ -0.34
HPS3-202ENST00000460120 UNC79Q9P2D8 2635 aa12.94□□□□□ -0.34
HPS3-202ENST00000460120 IL17DQ8TAD2 202 aa12.94□□□□□ -0.34
HPS3-202ENST00000460120 ANK3Q12955 4377 aaKnown RBP12.94□□□□□ -0.34
HPS3-202ENST00000460120 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.94□□□□□ -0.34
HPS3-202ENST00000460120 LINC00242Q5T6M2 205 aa12.94□□□□□ -0.34
HPS3-202ENST00000460120 ANKRD29Q8N6D5 301 aa12.94□□□□□ -0.34
HPS3-202ENST00000460120 HECTD1Q9ULT8 2610 aa12.94□□□□□ -0.34
HPS3-202ENST00000460120 TRBV20-1A0A075B6N2 111 aa12.93□□□□□ -0.34
HPS3-202ENST00000460120 A0A0B4J2C4 111 aa12.93□□□□□ -0.34
HPS3-202ENST00000460120 SPATA25Q9BR10 227 aa12.93□□□□□ -0.34
HPS3-202ENST00000460120 Q9H8V8 135 aa12.93□□□□□ -0.34
HPS3-202ENST00000460120 TRIAP1O43715 76 aa12.93□□□□□ -0.34
HPS3-202ENST00000460120 CARD19Q96LW7 228 aa12.93□□□□□ -0.34
HPS3-202ENST00000460120 MIAQ16674 131 aa12.92□□□□□ -0.34
HPS3-202ENST00000460120 TEX29Q8N6K0 151 aa12.92□□□□□ -0.34
HPS3-202ENST00000460120 GCN1Q92616 2671 aaKnown RBP12.92□□□□□ -0.34
HPS3-202ENST00000460120 ZFAND6Q6FIF0 208 aa12.92□□□□□ -0.34
HPS3-202ENST00000460120 TRAV4A0A0B4J268 109 aa12.91□□□□□ -0.34
HPS3-202ENST00000460120 UBE2L6O14933 153 aa12.91□□□□□ -0.34
HPS3-202ENST00000460120 HIVEP2P31629 2446 aa12.91□□□□□ -0.34
HPS3-202ENST00000460120 SLC25A20O43772 301 aa12.91□□□□□ -0.34
HPS3-202ENST00000460120 RNASE1P07998 156 aaKnown RBP12.91□□□□□ -0.34
HPS3-202ENST00000460120 TRGV4A0A0C4DH28 118 aa12.9□□□□□ -0.34
HPS3-202ENST00000460120 TEN1Q86WV5 123 aa12.9□□□□□ -0.34
HPS3-202ENST00000460120 PLAC8L1A1L4L8 177 aa12.9□□□□□ -0.35
HPS3-202ENST00000460120 DEFB130BP0DP73 79 aa12.9□□□□□ -0.35
HPS3-202ENST00000460120 DEFB130AP0DP74 79 aa12.9□□□□□ -0.35
HPS3-202ENST00000460120 GAGE6Q13070 117 aa12.9□□□□□ -0.35
HPS3-202ENST00000460120 IGLV1-51P01701 117 aa12.89□□□□□ -0.35
HPS3-202ENST00000460120 HERV-K104P63124 156 aa12.89□□□□□ -0.35
HPS3-202ENST00000460120 CLEC2BQ92478 149 aa12.89□□□□□ -0.35
HPS3-202ENST00000460120 RNF183Q96D59 192 aa12.89□□□□□ -0.35
HPS3-202ENST00000460120 DAZ2Q13117 558 aaKnown RBP12.88□□□□□ -0.35
HPS3-202ENST00000460120 DAZ4Q86SG3 579 aaKnown RBP12.88□□□□□ -0.35
HPS3-202ENST00000460120 DAZ3Q9NR90 486 aaKnown RBP12.88□□□□□ -0.35
HPS3-202ENST00000460120 C19orf73Q9NVV2 129 aa12.88□□□□□ -0.35
HPS3-202ENST00000460120 RPL13AP40429 203 aaKnown RBP12.88□□□□□ -0.35
HPS3-202ENST00000460120 HERVK_113P63121 156 aa12.88□□□□□ -0.35
HPS3-202ENST00000460120 SPANXDQ9BXN6 97 aa12.88□□□□□ -0.35
HPS3-202ENST00000460120 SPANXCQ9NY87 97 aa12.88□□□□□ -0.35
HPS3-202ENST00000460120 TIRAPP58753 221 aa12.87□□□□□ -0.35
HPS3-202ENST00000460120 MEIG1Q5JSS6 88 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms