RNA–Protein interactions for RNA: ENST00000447182.6

SDCBP-204, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SDCBP, Length 2,103 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-204ENST00000447182 DYNLRB2Q8TF09 96 aa13.73□□□□□ -0.21
SDCBP-204ENST00000447182 CRLF1O75462 422 aa13.73□□□□□ -0.21
SDCBP-204ENST00000447182 COX6A2Q02221 97 aa13.73□□□□□ -0.21
SDCBP-204ENST00000447182 CITED2Q99967 270 aaPredicted RBP13.72□□□□□ -0.21
SDCBP-204ENST00000447182 IGHV4-31P0DP07 118 aa13.72□□□□□ -0.21
SDCBP-204ENST00000447182 LINC00242Q5T6M2 205 aa13.72□□□□□ -0.21
SDCBP-204ENST00000447182 DAND5Q8N907 189 aa13.72□□□□□ -0.21
SDCBP-204ENST00000447182 CSDC2Q9Y534 153 aaKnown RBP13.72□□□□□ -0.21
SDCBP-204ENST00000447182 ZANQ9Y493 2812 aa13.71□□□□□ -0.21
SDCBP-204ENST00000447182 FAM240AA0A1B0GVK7 77 aa13.71□□□□□ -0.21
SDCBP-204ENST00000447182 IL17DQ8TAD2 202 aa13.71□□□□□ -0.21
SDCBP-204ENST00000447182 LINC00308Q8TCZ7 52 aa13.71□□□□□ -0.21
SDCBP-204ENST00000447182 ANKRD17O75179 2603 aaKnown RBP13.71□□□□□ -0.22
SDCBP-204ENST00000447182 MRPL23Q16540 153 aaKnown RBP13.7□□□□□ -0.22
SDCBP-204ENST00000447182 NHLRC4P0CG21 123 aaPredicted RBP13.7□□□□□ -0.22
SDCBP-204ENST00000447182 Q9H8V8 135 aa13.7□□□□□ -0.22
SDCBP-204ENST00000447182 MXRA5Q9NR99 2828 aa13.7□□□□□ -0.22
SDCBP-204ENST00000447182 COPS9Q8WXC6 57 aa13.69□□□□□ -0.22
SDCBP-204ENST00000447182 CSMD2Q7Z408 3487 aa13.69□□□□□ -0.22
SDCBP-204ENST00000447182 NDUFV3P56181 108 aaKnown RBP13.69□□□□□ -0.22
SDCBP-204ENST00000447182 C15orf53Q8NAA6 179 aa13.69□□□□□ -0.22
SDCBP-204ENST00000447182 TRBV10-1A0A0K0K1A3 114 aa13.67□□□□□ -0.22
SDCBP-204ENST00000447182 SMIM1B2RUZ4 78 aa13.67□□□□□ -0.22
SDCBP-204ENST00000447182 XCL2Q9UBD3 114 aa13.67□□□□□ -0.22
SDCBP-204ENST00000447182 LINC00694P0DN24 101 aa13.67□□□□□ -0.22
SDCBP-204ENST00000447182 CR1P17927 2039 aa13.67□□□□□ -0.22
SDCBP-204ENST00000447182 ODF3L2Q3SX64 289 aa13.66□□□□□ -0.22
SDCBP-204ENST00000447182 C1orf158Q8N1D5 194 aa13.66□□□□□ -0.22
SDCBP-204ENST00000447182 RPL36AP83881 106 aaKnown RBP13.66□□□□□ -0.22
SDCBP-204ENST00000447182 GAGE5Q13069 117 aa13.66□□□□□ -0.22
SDCBP-204ENST00000447182 GAGE6Q13070 117 aa13.66□□□□□ -0.22
SDCBP-204ENST00000447182 DAZ2Q13117 558 aaKnown RBP13.66□□□□□ -0.22
SDCBP-204ENST00000447182 DAZ4Q86SG3 579 aaKnown RBP13.66□□□□□ -0.22
SDCBP-204ENST00000447182 RPL36ALQ969Q0 106 aaKnown RBP13.66□□□□□ -0.22
SDCBP-204ENST00000447182 DAZ3Q9NR90 486 aaKnown RBP13.66□□□□□ -0.22
SDCBP-204ENST00000447182 TRAV25A0A0B4J276 109 aa13.65□□□□□ -0.22
SDCBP-204ENST00000447182 COX7A2LO14548 114 aa13.65□□□□□ -0.22
SDCBP-204ENST00000447182 TTC32Q5I0X7 151 aa13.65□□□□□ -0.22
SDCBP-204ENST00000447182 KHDC1LQ5JSQ8 128 aa13.65□□□□□ -0.22
SDCBP-204ENST00000447182 ZNF625Q96I27 306 aaPredicted RBP13.65□□□□□ -0.22
SDCBP-204ENST00000447182 PPDPFQ9H3Y8 114 aa13.65□□□□□ -0.22
SDCBP-204ENST00000447182 TRGV1A0A0A0MS02 117 aa13.64□□□□□ -0.23
SDCBP-204ENST00000447182 K7EQD1 137 aa13.64□□□□□ -0.23
SDCBP-204ENST00000447182 SHISA2Q6UWI4 295 aa13.64□□□□□ -0.23
SDCBP-204ENST00000447182 NTM-AS1Q6ZSK4 140 aa13.64□□□□□ -0.23
SDCBP-204ENST00000447182 SOSTDC1Q6X4U4 206 aa13.63□□□□□ -0.23
SDCBP-204ENST00000447182 STHQ8IWL8 128 aa13.63□□□□□ -0.23
SDCBP-204ENST00000447182 UTP20O75691 2785 aaKnown RBP13.63□□□□□ -0.23
SDCBP-204ENST00000447182 F5H768 121 aa13.63□□□□□ -0.23
SDCBP-204ENST00000447182 CDC42SE2Q9NRR3 84 aa13.63□□□□□ -0.23
SDCBP-204ENST00000447182 HERV-K104P63124 156 aa13.62□□□□□ -0.23
SDCBP-204ENST00000447182 IGSF10Q6WRI0 2623 aa13.62□□□□□ -0.23
SDCBP-204ENST00000447182 TRAV13-1A0A0B4J241 112 aa13.61□□□□□ -0.23
SDCBP-204ENST00000447182 NDUFA7O95182 113 aa13.61□□□□□ -0.23
SDCBP-204ENST00000447182 PRIMA1Q86XR5 153 aa13.61□□□□□ -0.23
SDCBP-204ENST00000447182 FBN2P35556 2912 aa13.61□□□□□ -0.23
SDCBP-204ENST00000447182 Q6ZTI0 123 aa13.6□□□□□ -0.23
SDCBP-204ENST00000447182 POLQO75417 2590 aa13.59□□□□□ -0.23
SDCBP-204ENST00000447182 MYO18BQ8IUG5 2567 aa13.59□□□□□ -0.23
SDCBP-204ENST00000447182 MYO9AB2RTY4 2548 aa13.59□□□□□ -0.23
SDCBP-204ENST00000447182 A0A0U1RRA0 63 aa13.58□□□□□ -0.23
SDCBP-204ENST00000447182 MEIG1Q5JSS6 88 aa13.58□□□□□ -0.23
SDCBP-204ENST00000447182 PIEZO1Q92508 2521 aa13.58□□□□□ -0.24
SDCBP-204ENST00000447182 ACACBO00763 2458 aa13.58□□□□□ -0.24
SDCBP-204ENST00000447182 TRACP01848 142 aa13.58□□□□□ -0.24
SDCBP-204ENST00000447182 ACYP1P07311 99 aa13.58□□□□□ -0.24
SDCBP-204ENST00000447182 TRBV7-7A0A0K0K1E9 115 aa13.57□□□□□ -0.24
SDCBP-204ENST00000447182 GAGE12JA6NER3 117 aa13.57□□□□□ -0.24
SDCBP-204ENST00000447182 GAGE7O76087 117 aa13.57□□□□□ -0.24
SDCBP-204ENST00000447182 GAGE12FP0CL80 117 aa13.57□□□□□ -0.24
SDCBP-204ENST00000447182 GAGE12GP0CL81 117 aa13.57□□□□□ -0.24
SDCBP-204ENST00000447182 GAGE12IP0CL82 117 aa13.57□□□□□ -0.24
SDCBP-204ENST00000447182 GAGE4Q13068 117 aa13.57□□□□□ -0.24
SDCBP-204ENST00000447182 TMEM86BQ8N661 226 aa13.57□□□□□ -0.24
SDCBP-204ENST00000447182 B5MCH6 92 aa13.55□□□□□ -0.24
SDCBP-204ENST00000447182 HIST2H2BDQ6DRA6 164 aa13.55□□□□□ -0.24
SDCBP-204ENST00000447182 Q96MF0 132 aa13.55□□□□□ -0.24
SDCBP-204ENST00000447182 CACNA1AO00555 2505 aa13.54□□□□□ -0.24
SDCBP-204ENST00000447182 TMEM243Q9BU79 118 aa13.54□□□□□ -0.24
SDCBP-204ENST00000447182 PF4P02776 101 aa13.54□□□□□ -0.24
SDCBP-204ENST00000447182 DEFB113Q30KQ7 82 aa13.54□□□□□ -0.24
SDCBP-204ENST00000447182 LRRC75A-AS1Q8N1F1 130 aa13.54□□□□□ -0.24
SDCBP-204ENST00000447182 AKAP9Q99996 3911 aa13.53□□□□□ -0.24
SDCBP-204ENST00000447182 TEX15Q9BXT5 2789 aa13.53□□□□□ -0.24
SDCBP-204ENST00000447182 UBE2L6O14933 153 aa13.53□□□□□ -0.24
SDCBP-204ENST00000447182 CCDC179H3BU77 68 aa13.52□□□□□ -0.25
SDCBP-204ENST00000447182 FAM222AQ5U5X8 452 aa13.52□□□□□ -0.25
SDCBP-204ENST00000447182 NOP10Q9NPE3 64 aaKnown RBP13.52□□□□□ -0.25
SDCBP-204ENST00000447182 HIST2H2BCQ6DN03 193 aa13.51□□□□□ -0.25
SDCBP-204ENST00000447182 SS18L2Q9UHA2 77 aa13.51□□□□□ -0.25
SDCBP-204ENST00000447182 TRAV13-2A0A0B4J235 113 aa13.51□□□□□ -0.25
SDCBP-204ENST00000447182 CCL24O00175 119 aa13.51□□□□□ -0.25
SDCBP-204ENST00000447182 KRTAP10-9P60411 292 aa13.51□□□□□ -0.25
SDCBP-204ENST00000447182 IMUPQ9GZP8 106 aa13.51□□□□□ -0.25
SDCBP-204ENST00000447182 PTPN13Q12923 2485 aa13.5□□□□□ -0.25
SDCBP-204ENST00000447182 PLAC8L1A1L4L8 177 aa13.49□□□□□ -0.25
SDCBP-204ENST00000447182 GIG44P09565 113 aaPredicted RBP13.49□□□□□ -0.25
SDCBP-204ENST00000447182 BAALC-AS2P0C853 105 aa13.49□□□□□ -0.25
SDCBP-204ENST00000447182 RPL28P46779 137 aaKnown RBP13.49□□□□□ -0.25
SDCBP-204ENST00000447182 FAM208BQ5VWN6 2430 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms