RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 LINC00588Q9Y4M8 146 aa8.31□□□□□ -1.08
PTPRF-208ENST00000437607 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.3□□□□□ -1.08
PTPRF-208ENST00000437607 IGKV2-29A2NJV5 120 aaPredicted RBP8.3□□□□□ -1.08
PTPRF-208ENST00000437607 C5orf52A6NGY3 159 aa8.3□□□□□ -1.08
PTPRF-208ENST00000437607 PKIAP61925 76 aa8.3□□□□□ -1.08
PTPRF-208ENST00000437607 LELP1Q5T871 98 aa8.3□□□□□ -1.08
PTPRF-208ENST00000437607 NTM-AS1Q6ZSK4 140 aa8.3□□□□□ -1.08
PTPRF-208ENST00000437607 C20orf203Q8NBC4 194 aa8.3□□□□□ -1.08
PTPRF-208ENST00000437607 CHCHD7Q9BUK0 85 aa8.3□□□□□ -1.08
PTPRF-208ENST00000437607 A0A096LNJ9 63 aa8.29□□□□□ -1.08
PTPRF-208ENST00000437607 TRAV8-6A0A0B4J262 113 aa8.29□□□□□ -1.08
PTPRF-208ENST00000437607 LEPROTL1O95214 131 aa8.29□□□□□ -1.08
PTPRF-208ENST00000437607 RPL39P62891 51 aaKnown RBP8.29□□□□□ -1.08
PTPRF-208ENST00000437607 AMMECR1LQ6DCA0 310 aa8.29□□□□□ -1.08
PTPRF-208ENST00000437607 Q8N1X5 172 aa8.29□□□□□ -1.08
PTPRF-208ENST00000437607 TOMM6Q96B49 74 aa8.29□□□□□ -1.08
PTPRF-208ENST00000437607 KRTAP1-5Q9BYS1 174 aa8.29□□□□□ -1.08
PTPRF-208ENST00000437607 HSPB8Q9UJY1 196 aa8.29□□□□□ -1.08
PTPRF-208ENST00000437607 FABP4P15090 132 aa8.28□□□□□ -1.08
PTPRF-208ENST00000437607 SPATA12Q7Z6I5 190 aa8.28□□□□□ -1.08
PTPRF-208ENST00000437607 PACRGQ96M98 296 aaPredicted RBP8.28□□□□□ -1.08
PTPRF-208ENST00000437607 SCGB3A1Q96QR1 104 aa8.28□□□□□ -1.08
PTPRF-208ENST00000437607 SPANXA1Q9NS26 97 aa8.28□□□□□ -1.08
PTPRF-208ENST00000437607 DNAH8Q96JB1 4490 aa8.28□□□□□ -1.08
PTPRF-208ENST00000437607 H7C423 109 aa8.27□□□□□ -1.09
PTPRF-208ENST00000437607 ATP5LO75964 103 aa8.27□□□□□ -1.09
PTPRF-208ENST00000437607 CCL18P55774 89 aa8.27□□□□□ -1.09
PTPRF-208ENST00000437607 GAGE6Q13070 117 aa8.27□□□□□ -1.09
PTPRF-208ENST00000437607 LYPD5Q6UWN5 251 aa8.27□□□□□ -1.09
PTPRF-208ENST00000437607 HIST1H2BLQ99880 126 aa8.27□□□□□ -1.09
PTPRF-208ENST00000437607 FGF6P10767 208 aa8.26□□□□□ -1.09
PTPRF-208ENST00000437607 ZNF25P17030 456 aaPredicted RBP8.26□□□□□ -1.09
PTPRF-208ENST00000437607 KRTAP10-2P60368 255 aa8.26□□□□□ -1.09
PTPRF-208ENST00000437607 DGAT2L7PQ6IED9 249 aa8.26□□□□□ -1.09
PTPRF-208ENST00000437607 Q6ZN92 141 aa8.26□□□□□ -1.09
PTPRF-208ENST00000437607 OR5A1Q8NGJ0 315 aa8.26□□□□□ -1.09
PTPRF-208ENST00000437607 TMEM101Q96IK0 257 aa8.26□□□□□ -1.09
PTPRF-208ENST00000437607 TIMM17AQ99595 171 aa8.26□□□□□ -1.09
PTPRF-208ENST00000437607 MRPS16Q9Y3D3 137 aaKnown RBP8.26□□□□□ -1.09
PTPRF-208ENST00000437607 A0A087WX48 190 aa8.25□□□□□ -1.09
PTPRF-208ENST00000437607 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.25□□□□□ -1.09
PTPRF-208ENST00000437607 ESRGQ1W209 222 aa8.25□□□□□ -1.09
PTPRF-208ENST00000437607 PAPPA-AS1Q5QFB9 102 aa8.25□□□□□ -1.09
PTPRF-208ENST00000437607 ERASQ7Z444 233 aa8.25□□□□□ -1.09
PTPRF-208ENST00000437607 MRPL52Q86TS9 123 aaKnown RBP8.25□□□□□ -1.09
PTPRF-208ENST00000437607 IFI27L1Q96BM0 104 aa8.25□□□□□ -1.09
PTPRF-208ENST00000437607 TMEM141Q96I45 108 aa8.25□□□□□ -1.09
PTPRF-208ENST00000437607 TIMM21Q9BVV7 248 aa8.25□□□□□ -1.09
PTPRF-208ENST00000437607 Q9H8V8 135 aa8.25□□□□□ -1.09
PTPRF-208ENST00000437607 UBE2D4Q9Y2X8 147 aa8.25□□□□□ -1.09
PTPRF-208ENST00000437607 MYCBP2O75592 4640 aa8.25□□□□□ -1.09
PTPRF-208ENST00000437607 TMEM262E9PQX1 116 aa8.24□□□□□ -1.09
PTPRF-208ENST00000437607 NPSP0C0P6 89 aa8.24□□□□□ -1.09
PTPRF-208ENST00000437607 Q6ZUT4 128 aa8.24□□□□□ -1.09
PTPRF-208ENST00000437607 PYGO1Q9Y3Y4 419 aa8.24□□□□□ -1.09
PTPRF-208ENST00000437607 IFITM10A6NMD0 228 aa8.23□□□□□ -1.09
PTPRF-208ENST00000437607 H0Y8G0 127 aa8.23□□□□□ -1.09
PTPRF-208ENST00000437607 KRTDAPP60985 99 aa8.23□□□□□ -1.09
PTPRF-208ENST00000437607 MPV17L2Q567V2 206 aa8.23□□□□□ -1.09
PTPRF-208ENST00000437607 WFDC10BQ8IUB3 73 aa8.23□□□□□ -1.09
PTPRF-208ENST00000437607 MAP1LC3CQ9BXW4 147 aa8.23□□□□□ -1.09
PTPRF-208ENST00000437607 IGLV4-3A0A075B6K6 122 aa8.22□□□□□ -1.09
PTPRF-208ENST00000437607 IGIPA6NJ69 53 aa8.22□□□□□ -1.09
PTPRF-208ENST00000437607 RBX1P62877 108 aa8.22□□□□□ -1.09
PTPRF-208ENST00000437607 MRPS36P82909 103 aaKnown RBP8.22□□□□□ -1.09
PTPRF-208ENST00000437607 TEX43Q6ZNM6 134 aa8.22□□□□□ -1.09
PTPRF-208ENST00000437607 LINC00173Q6ZV60 143 aa8.22□□□□□ -1.09
PTPRF-208ENST00000437607 C2orf88Q9BSF0 95 aa8.22□□□□□ -1.09
PTPRF-208ENST00000437607 UPK3BQ9BT76 320 aa8.22□□□□□ -1.09
PTPRF-208ENST00000437607 CSDC2Q9Y534 153 aaKnown RBP8.22□□□□□ -1.09
PTPRF-208ENST00000437607 C20orf202A1L168 122 aa8.21□□□□□ -1.1
PTPRF-208ENST00000437607 OR10D4PQ8NGN7 298 aa8.21□□□□□ -1.1
PTPRF-208ENST00000437607 BAALCQ8WXS3 180 aa8.21□□□□□ -1.1
PTPRF-208ENST00000437607 DMBT1Q9UGM3 2413 aaPredicted RBP8.21□□□□□ -1.1
PTPRF-208ENST00000437607 SRRM2Q9UQ35 2752 aaKnown RBP8.2□□□□□ -1.1
PTPRF-208ENST00000437607 A0A1B0GUV1 79 aa8.2□□□□□ -1.1
PTPRF-208ENST00000437607 IGHV3-30P01768 117 aa8.2□□□□□ -1.1
PTPRF-208ENST00000437607 IGHV3-33P01772 117 aa8.2□□□□□ -1.1
PTPRF-208ENST00000437607 ANGP03950 147 aaKnown RBP8.2□□□□□ -1.1
PTPRF-208ENST00000437607 PRSS1P07477 247 aa8.2□□□□□ -1.1
PTPRF-208ENST00000437607 IGHV3-30-3P0DP02 117 aa8.2□□□□□ -1.1
PTPRF-208ENST00000437607 IGHV3-30-5P0DP03 117 aa8.2□□□□□ -1.1
PTPRF-208ENST00000437607 AKR1D1P51857 326 aa8.2□□□□□ -1.1
PTPRF-208ENST00000437607 RNASE13Q5GAN3 156 aaKnown RBP8.2□□□□□ -1.1
PTPRF-208ENST00000437607 TTC32Q5I0X7 151 aa8.2□□□□□ -1.1
PTPRF-208ENST00000437607 Q8N976 141 aa8.2□□□□□ -1.1
PTPRF-208ENST00000437607 IGLV4-60A0A075B6I1 120 aa8.19□□□□□ -1.1
PTPRF-208ENST00000437607 SYS1-DBNDD2H3BUS1 97 aa8.19□□□□□ -1.1
PTPRF-208ENST00000437607 SIVA1O15304 175 aa8.19□□□□□ -1.1
PTPRF-208ENST00000437607 CRPP02741 224 aa8.19□□□□□ -1.1
PTPRF-208ENST00000437607 C3orf79P0CE67 100 aa8.19□□□□□ -1.1
PTPRF-208ENST00000437607 PMVKQ15126 192 aa8.19□□□□□ -1.1
PTPRF-208ENST00000437607 LINC01556Q5JQF7 62 aa8.19□□□□□ -1.1
PTPRF-208ENST00000437607 Q6ZRN7 208 aaPredicted RBP8.19□□□□□ -1.1
PTPRF-208ENST00000437607 ZNF664Q8N3J9 261 aa8.19□□□□□ -1.1
PTPRF-208ENST00000437607 OPRPNQ99935 248 aaPredicted RBP8.19□□□□□ -1.1
PTPRF-208ENST00000437607 VCX2Q9H322 139 aa8.19□□□□□ -1.1
PTPRF-208ENST00000437607 TRAV12-1A0A0B4J245 112 aa8.18□□□□□ -1.1
PTPRF-208ENST00000437607 DNAH10OSP0CZ25 163 aa8.18□□□□□ -1.1
PTPRF-208ENST00000437607 FUSP35637 526 aaKnown RBP eCLIP8.18□□□□□ -1.13e-9■■■■■ 29.2
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms