RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 ZNF664Q8N3J9 261 aa4.19□□□□□ -1.74
USP54-202ENST00000413442 Q8N3U1 123 aa4.19□□□□□ -1.74
USP54-202ENST00000413442 RPL39LQ96EH5 51 aaKnown RBP4.19□□□□□ -1.74
USP54-202ENST00000413442 SEC11CQ9BY50 192 aa4.19□□□□□ -1.74
USP54-202ENST00000413442 CDC42SE2Q9NRR3 84 aa4.19□□□□□ -1.74
USP54-202ENST00000413442 TMEM218A2RU14 115 aa4.18□□□□□ -1.74
USP54-202ENST00000413442 TNFRSF6BO95407 300 aa4.18□□□□□ -1.74
USP54-202ENST00000413442 TSHBP01222 138 aa4.18□□□□□ -1.74
USP54-202ENST00000413442 PLA2G1BP04054 148 aaKnown RBP4.18□□□□□ -1.74
USP54-202ENST00000413442 TMEM136Q6ZRR5 245 aa4.18□□□□□ -1.74
USP54-202ENST00000413442 NRACQ8N912 160 aa4.18□□□□□ -1.74
USP54-202ENST00000413442 PKHD1P08F94 4074 aa4.18□□□□□ -1.74
USP54-202ENST00000413442 IGHV1-58A0A0C4DH39 117 aa4.17□□□□□ -1.74
USP54-202ENST00000413442 LINC00959A0A1B0GUT2 108 aa4.17□□□□□ -1.74
USP54-202ENST00000413442 HLA-DQA1P01909 254 aa4.17□□□□□ -1.74
USP54-202ENST00000413442 S100PP25815 95 aa4.17□□□□□ -1.74
USP54-202ENST00000413442 MRPS36P82909 103 aaKnown RBP4.17□□□□□ -1.74
USP54-202ENST00000413442 PAPPA-AS1Q5QFB9 102 aa4.17□□□□□ -1.74
USP54-202ENST00000413442 CD164L2Q6UWJ8 174 aa4.17□□□□□ -1.74
USP54-202ENST00000413442 CHCHD10Q8WYQ3 142 aaPredicted RBP4.17□□□□□ -1.74
USP54-202ENST00000413442 CHAC1Q9BUX1 264 aa4.17□□□□□ -1.74
USP54-202ENST00000413442 SPANXA1Q9NS26 97 aa4.17□□□□□ -1.74
USP54-202ENST00000413442 LINC00474Q9P2X8 69 aa4.17□□□□□ -1.74
USP54-202ENST00000413442 PYGO1Q9Y3Y4 419 aa4.17□□□□□ -1.74
USP54-202ENST00000413442 KIAA1109Q2LD37 5005 aa4.16□□□□□ -1.74
USP54-202ENST00000413442 IGLV10-54A0A075B6I4 117 aa4.16□□□□□ -1.74
USP54-202ENST00000413442 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.16□□□□□ -1.74
USP54-202ENST00000413442 IGHV3-64A0A075B6Q5 118 aa4.16□□□□□ -1.74
USP54-202ENST00000413442 APOMO95445 188 aa4.16□□□□□ -1.74
USP54-202ENST00000413442 PRSS1P07477 247 aa4.16□□□□□ -1.74
USP54-202ENST00000413442 RPS10P46783 165 aaKnown RBP4.16□□□□□ -1.74
USP54-202ENST00000413442 WFDC2Q14508 124 aa4.16□□□□□ -1.74
USP54-202ENST00000413442 PRELID3AQ96N28 172 aa4.16□□□□□ -1.74
USP54-202ENST00000413442 SMIM2Q9BVW6 85 aa4.16□□□□□ -1.74
USP54-202ENST00000413442 NXT2Q9NPJ8 142 aaKnown RBP4.16□□□□□ -1.74
USP54-202ENST00000413442 UBE2D4Q9Y2X8 147 aa4.16□□□□□ -1.74
USP54-202ENST00000413442 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.15□□□□□ -1.75
USP54-202ENST00000413442 GVQW2A0A096LPI5 108 aaPredicted RBP4.15□□□□□ -1.75
USP54-202ENST00000413442 hDV102S1A0JD36 115 aa4.15□□□□□ -1.75
USP54-202ENST00000413442 IGKV2-29A2NJV5 120 aaPredicted RBP4.15□□□□□ -1.75
USP54-202ENST00000413442 GAGE12HA6NDE8 117 aa4.15□□□□□ -1.75
USP54-202ENST00000413442 D6R8Y8 96 aa4.15□□□□□ -1.75
USP54-202ENST00000413442 LECT2O14960 151 aa4.15□□□□□ -1.75
USP54-202ENST00000413442 MT-ND6P03923 174 aa4.15□□□□□ -1.75
USP54-202ENST00000413442 IFI27P40305 119 aaPredicted RBP4.15□□□□□ -1.75
USP54-202ENST00000413442 SEC11AP67812 179 aa4.15□□□□□ -1.75
USP54-202ENST00000413442 IFITM2Q01629 132 aa4.15□□□□□ -1.75
USP54-202ENST00000413442 ORMDL2Q53FV1 153 aa4.15□□□□□ -1.75
USP54-202ENST00000413442 C10orf91Q5T1B1 145 aa4.15□□□□□ -1.75
USP54-202ENST00000413442 MRPL54Q6P161 138 aaKnown RBP4.15□□□□□ -1.75
USP54-202ENST00000413442 SDIM1Q6ZPB5 146 aa4.15□□□□□ -1.75
USP54-202ENST00000413442 GNB1LQ9BYB4 327 aa4.15□□□□□ -1.75
USP54-202ENST00000413442 MAP1LC3AQ9H492 121 aa4.15□□□□□ -1.75
USP54-202ENST00000413442 HERC2O95714 4834 aa4.15□□□□□ -1.75
USP54-202ENST00000413442 ZNF561-AS1K7EIQ3 104 aa4.14□□□□□ -1.75
USP54-202ENST00000413442 MALP21145 153 aa4.14□□□□□ -1.75
USP54-202ENST00000413442 FOXI1Q12951 378 aa4.14□□□□□ -1.75
USP54-202ENST00000413442 CIRBPQ14011 172 aaKnown RBP4.14□□□□□ -1.75
USP54-202ENST00000413442 RHEBQ15382 184 aa4.14□□□□□ -1.75
USP54-202ENST00000413442 NDUFA5Q16718 116 aa4.14□□□□□ -1.75
USP54-202ENST00000413442 RNF151Q2KHN1 245 aa4.14□□□□□ -1.75
USP54-202ENST00000413442 LINC01561Q8N1V8 128 aa4.14□□□□□ -1.75
USP54-202ENST00000413442 Q8N8P6 123 aa4.14□□□□□ -1.75
USP54-202ENST00000413442 DEFB104AQ8WTQ1 72 aa4.14□□□□□ -1.75
USP54-202ENST00000413442 C2orf48Q96LS8 159 aa4.14□□□□□ -1.75
USP54-202ENST00000413442 CARHSP1Q9Y2V2 147 aaKnown RBP4.14□□□□□ -1.75
USP54-202ENST00000413442 DNAH11Q96DT5 4516 aa4.14□□□□□ -1.75
USP54-202ENST00000413442 DYNC1H1Q14204 4646 aaKnown RBP4.14□□□□□ -1.75
USP54-202ENST00000413442 RYR1P21817 5038 aa4.13□□□□□ -1.75
USP54-202ENST00000413442 COX7A2LO14548 114 aa4.13□□□□□ -1.75
USP54-202ENST00000413442 GAS8-AS1O95177 125 aa4.13□□□□□ -1.75
USP54-202ENST00000413442 NPYP01303 97 aa4.13□□□□□ -1.75
USP54-202ENST00000413442 INAFM2P0DMQ5 153 aa4.13□□□□□ -1.75
USP54-202ENST00000413442 Q5VSD8 79 aa4.13□□□□□ -1.75
USP54-202ENST00000413442 CLPSL2Q6UWE3 100 aa4.13□□□□□ -1.75
USP54-202ENST00000413442 OR10D4PQ8NGN7 298 aa4.13□□□□□ -1.75
USP54-202ENST00000413442 DPH3Q96FX2 82 aa4.13□□□□□ -1.75
USP54-202ENST00000413442 FAM30AQ9NZY2 134 aa4.13□□□□□ -1.75
USP54-202ENST00000413442 CYSLTR1Q9Y271 337 aa4.13□□□□□ -1.75
USP54-202ENST00000413442 IGLV4-69A0A075B6H9 119 aa4.12□□□□□ -1.75
USP54-202ENST00000413442 SMKR1H3BMG3 65 aa4.12□□□□□ -1.75
USP54-202ENST00000413442 SNAPINO95295 136 aa4.12□□□□□ -1.75
USP54-202ENST00000413442 Q6ZN92 141 aa4.12□□□□□ -1.75
USP54-202ENST00000413442 FAM19A3Q7Z5A8 133 aa4.12□□□□□ -1.75
USP54-202ENST00000413442 C15orf56Q8N910 161 aa4.12□□□□□ -1.75
USP54-202ENST00000413442 CIRBP-AS1Q8TBR5 109 aa4.12□□□□□ -1.75
USP54-202ENST00000413442 TMEM141Q96I45 108 aa4.12□□□□□ -1.75
USP54-202ENST00000413442 TGIF2-C20orf24A0A0A6YYL0 155 aa4.11□□□□□ -1.75
USP54-202ENST00000413442 IGKV3OR2-268A0A0C4DH90 116 aa4.11□□□□□ -1.75
USP54-202ENST00000413442 XCL1P47992 114 aa4.11□□□□□ -1.75
USP54-202ENST00000413442 SYCNQ0VAF6 134 aa4.11□□□□□ -1.75
USP54-202ENST00000413442 ODF1Q14990 250 aa4.11□□□□□ -1.75
USP54-202ENST00000413442 TEX43Q6ZNM6 134 aa4.11□□□□□ -1.75
USP54-202ENST00000413442 SCXQ7RTU7 201 aa4.11□□□□□ -1.75
USP54-202ENST00000413442 ERASQ7Z444 233 aa4.11□□□□□ -1.75
USP54-202ENST00000413442 COMMD7Q86VX2 200 aa4.11□□□□□ -1.75
USP54-202ENST00000413442 SVBPQ8N300 66 aa4.11□□□□□ -1.75
USP54-202ENST00000413442 PRSS3P2Q8NHM4 247 aa4.11□□□□□ -1.75
USP54-202ENST00000413442 TIMM17AQ99595 171 aa4.11□□□□□ -1.75
USP54-202ENST00000413442 C2orf88Q9BSF0 95 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 114.8 ms