RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 SEC11AP67812 179 aa13.36□□□□□ -0.27
USP39-202ENST00000409025 LURAP1LQ8IV03 231 aa13.36□□□□□ -0.27
USP39-202ENST00000409025 Q8NAQ8 132 aa13.36□□□□□ -0.27
USP39-202ENST00000409025 ORAOV1Q8WV07 137 aa13.36□□□□□ -0.27
USP39-202ENST00000409025 CSDC2Q9Y534 153 aaKnown RBP13.36□□□□□ -0.27
USP39-202ENST00000409025 TMEM223A0PJW6 202 aa13.35□□□□□ -0.27
USP39-202ENST00000409025 UBE2L6O14933 153 aa13.35□□□□□ -0.27
USP39-202ENST00000409025 ZNF815PA8K554 130 aa13.35□□□□□ -0.27
USP39-202ENST00000409025 PRO0255Q9UI72 69 aa13.35□□□□□ -0.27
USP39-202ENST00000409025 TRRAPQ9Y4A5 3859 aa13.35□□□□□ -0.27
USP39-202ENST00000409025 TINCRA0A1B0GVN0 87 aa13.34□□□□□ -0.27
USP39-202ENST00000409025 A8MZ25 164 aa13.33□□□□□ -0.28
USP39-202ENST00000409025 H7C423 109 aa13.33□□□□□ -0.28
USP39-202ENST00000409025 DAD1P61803 113 aa13.33□□□□□ -0.28
USP39-202ENST00000409025 GYPEP15421 78 aa13.33□□□□□ -0.28
USP39-202ENST00000409025 AMMECR1LQ6DCA0 310 aa13.33□□□□□ -0.28
USP39-202ENST00000409025 LEPROTO15243 131 aa13.32□□□□□ -0.28
USP39-202ENST00000409025 UBE2D1P51668 147 aa13.32□□□□□ -0.28
USP39-202ENST00000409025 OR5A1Q8NGJ0 315 aa13.32□□□□□ -0.28
USP39-202ENST00000409025 A6NDN8 102 aa13.31□□□□□ -0.28
USP39-202ENST00000409025 J3QQQ9 107 aa13.31□□□□□ -0.28
USP39-202ENST00000409025 SPART-AS1P0CW21 52 aa13.31□□□□□ -0.28
USP39-202ENST00000409025 LGALS3P17931 250 aaKnown RBP13.31□□□□□ -0.28
USP39-202ENST00000409025 TAL2Q16559 108 aa13.31□□□□□ -0.28
USP39-202ENST00000409025 TMEM101Q96IK0 257 aa13.31□□□□□ -0.28
USP39-202ENST00000409025 TRBV6-8A0A0A6YYG3 113 aa13.31□□□□□ -0.28
USP39-202ENST00000409025 GEMIN7Q9H840 131 aaKnown RBP13.31□□□□□ -0.28
USP39-202ENST00000409025 FBN1P35555 2871 aaKnown RBP13.31□□□□□ -0.28
USP39-202ENST00000409025 GCSHP23434 173 aa13.3□□□□□ -0.28
USP39-202ENST00000409025 TSPEAR-AS2P59090 65 aa13.3□□□□□ -0.28
USP39-202ENST00000409025 SCGB1D4Q6XE38 83 aa13.3□□□□□ -0.28
USP39-202ENST00000409025 ATP6V0E2Q8NHE4 81 aa13.3□□□□□ -0.28
USP39-202ENST00000409025 CELA1Q9UNI1 258 aa13.3□□□□□ -0.28
USP39-202ENST00000409025 PAX4O43316 350 aa13.29□□□□□ -0.28
USP39-202ENST00000409025 PLEKHB2Q96CS7 222 aa13.29□□□□□ -0.28
USP39-202ENST00000409025 CDC42SE2Q9NRR3 84 aa13.29□□□□□ -0.28
USP39-202ENST00000409025 COX11Q9Y6N1 276 aa13.29□□□□□ -0.28
USP39-202ENST00000409025 ATP5G1P05496 136 aa13.29□□□□□ -0.28
USP39-202ENST00000409025 TIRAPP58753 221 aa13.29□□□□□ -0.28
USP39-202ENST00000409025 CEND1Q8N111 149 aa13.29□□□□□ -0.28
USP39-202ENST00000409025 HIST1H4GQ99525 98 aa13.29□□□□□ -0.28
USP39-202ENST00000409025 IGHV3-64A0A075B6Q5 118 aa13.28□□□□□ -0.28
USP39-202ENST00000409025 TAX1BP3O14907 124 aa13.28□□□□□ -0.28
USP39-202ENST00000409025 LINC00469Q8N7U9 141 aa13.28□□□□□ -0.28
USP39-202ENST00000409025 G3V4G9 280 aa13.27□□□□□ -0.28
USP39-202ENST00000409025 Q6ZVH6 145 aa13.27□□□□□ -0.28
USP39-202ENST00000409025 TM2D2Q9BX73 214 aa13.27□□□□□ -0.28
USP39-202ENST00000409025 GAGE6Q13070 117 aa13.27□□□□□ -0.29
USP39-202ENST00000409025 CHCHD5Q9BSY4 110 aa13.27□□□□□ -0.29
USP39-202ENST00000409025 FAM19A3Q7Z5A8 133 aa13.26□□□□□ -0.29
USP39-202ENST00000409025 TEX48A0A1B0GUV7 120 aa13.25□□□□□ -0.29
USP39-202ENST00000409025 H3BRM9 83 aa13.25□□□□□ -0.29
USP39-202ENST00000409025 PTTG1IPP53801 180 aa13.25□□□□□ -0.29
USP39-202ENST00000409025 FXYD2P54710 66 aa13.25□□□□□ -0.29
USP39-202ENST00000409025 HERVK_113P63121 156 aa13.25□□□□□ -0.29
USP39-202ENST00000409025 IGLV5-45A0A087WSX0 123 aa13.25□□□□□ -0.29
USP39-202ENST00000409025 IGHV1-58A0A0C4DH39 117 aa13.25□□□□□ -0.29
USP39-202ENST00000409025 IGHV3-30-3P0DP02 117 aa13.25□□□□□ -0.29
USP39-202ENST00000409025 LINC00242Q5T6M2 205 aa13.24□□□□□ -0.29
USP39-202ENST00000409025 VSIG2Q96IQ7 327 aa13.24□□□□□ -0.29
USP39-202ENST00000409025 TRAV13-1A0A0B4J241 112 aa13.23□□□□□ -0.29
USP39-202ENST00000409025 A0A0J9YY99 117 aa13.23□□□□□ -0.29
USP39-202ENST00000409025 F5H768 121 aa13.23□□□□□ -0.29
USP39-202ENST00000409025 CDKN2A-AS1Q9UH64 79 aa13.23□□□□□ -0.29
USP39-202ENST00000409025 TRAV8-3A0A0A6YYJ7 113 aa13.23□□□□□ -0.29
USP39-202ENST00000409025 SPINK8P0C7L1 97 aa13.23□□□□□ -0.29
USP39-202ENST00000409025 SAMD5Q5TGI4 173 aa13.23□□□□□ -0.29
USP39-202ENST00000409025 COX6A2Q02221 97 aa13.22□□□□□ -0.29
USP39-202ENST00000409025 RETNQ9HD89 108 aa13.22□□□□□ -0.29
USP39-202ENST00000409025 NBEAL2Q6ZNJ1 2754 aa13.22□□□□□ -0.29
USP39-202ENST00000409025 STAB1Q9NY15 2570 aa13.22□□□□□ -0.29
USP39-202ENST00000409025 K7EP13 123 aa13.21□□□□□ -0.29
USP39-202ENST00000409025 SRSF9Q13242 221 aaKnown RBP eCLIP13.21□□□□□ -0.29
USP39-202ENST00000409025 TRAV26-1A0A087WT03 109 aa13.21□□□□□ -0.3
USP39-202ENST00000409025 A0A096LPF7 62 aa13.21□□□□□ -0.3
USP39-202ENST00000409025 SMIM13P0DJ93 91 aa13.21□□□□□ -0.3
USP39-202ENST00000409025 HTN3P15516 51 aa13.21□□□□□ -0.3
USP39-202ENST00000409025 SPANXB1Q9NS25 103 aaPredicted RBP13.2□□□□□ -0.3
USP39-202ENST00000409025 IGLV4-60A0A075B6I1 120 aa13.19□□□□□ -0.3
USP39-202ENST00000409025 NHP2Q9NX24 153 aaKnown RBP13.19□□□□□ -0.3
USP39-202ENST00000409025 TMEM262E9PQX1 116 aa13.17□□□□□ -0.3
USP39-202ENST00000409025 RAB37Q96AX2 223 aa13.17□□□□□ -0.3
USP39-202ENST00000409025 CMYA5Q8N3K9 4069 aa13.17□□□□□ -0.3
USP39-202ENST00000409025 C9orf118A6NHY6 69 aa13.17□□□□□ -0.3
USP39-202ENST00000409025 MRPL23Q16540 153 aaKnown RBP13.17□□□□□ -0.3
USP39-202ENST00000409025 C12orf74Q32Q52 190 aa13.17□□□□□ -0.3
USP39-202ENST00000409025 NDUFA12Q9UI09 145 aa13.17□□□□□ -0.3
USP39-202ENST00000409025 VAMP3Q15836 100 aa13.16□□□□□ -0.3
USP39-202ENST00000409025 C10orf126Q8N4M7 172 aa13.16□□□□□ -0.3
USP39-202ENST00000409025 C11orf68Q9H3H3 251 aaKnown RBP13.16□□□□□ -0.3
USP39-202ENST00000409025 A0A1B0GUV1 79 aa13.15□□□□□ -0.3
USP39-202ENST00000409025 SH2D6Q7Z4S9 175 aa13.15□□□□□ -0.3
USP39-202ENST00000409025 ICOSQ9Y6W8 199 aa13.15□□□□□ -0.3
USP39-202ENST00000409025 A0A0J9YXY3 114 aa13.15□□□□□ -0.3
USP39-202ENST00000409025 TMEM238LA0A1B0GVL6 79 aa13.15□□□□□ -0.3
USP39-202ENST00000409025 A6NJY4 79 aa13.15□□□□□ -0.3
USP39-202ENST00000409025 ZFAND6Q6FIF0 208 aa13.15□□□□□ -0.3
USP39-202ENST00000409025 IGKV3OR2-268A0A0C4DH90 116 aa13.14□□□□□ -0.31
USP39-202ENST00000409025 IGLV5-39A0A0G2JS06 123 aa13.14□□□□□ -0.31
USP39-202ENST00000409025 K7ERJ3 54 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms