RNA–Protein interactions for RNA: ENST00000391814.5

SHANK1-204, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHANK1, Length 6,622 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-204ENST00000391814 UBE2D4Q9Y2X8 147 aa11.99□□□□□ -0.49
SHANK1-204ENST00000391814 PRR9Q5T870 116 aa11.99□□□□□ -0.49
SHANK1-204ENST00000391814 USF3Q68DE3 2245 aa11.99□□□□□ -0.49
SHANK1-204ENST00000391814 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.98□□□□□ -0.49
SHANK1-204ENST00000391814 C11orf21Q9P2W6 132 aa11.98□□□□□ -0.49
SHANK1-204ENST00000391814 PYGO1Q9Y3Y4 419 aa11.98□□□□□ -0.49
SHANK1-204ENST00000391814 A6NDX4 124 aa11.98□□□□□ -0.49
SHANK1-204ENST00000391814 ODF3BA8MYP8 253 aa11.98□□□□□ -0.49
SHANK1-204ENST00000391814 Q6ZQY7 126 aa11.98□□□□□ -0.49
SHANK1-204ENST00000391814 CELA1Q9UNI1 258 aa11.98□□□□□ -0.49
SHANK1-204ENST00000391814 PCDH15Q96QU1 1955 aa11.97□□□□□ -0.49
SHANK1-204ENST00000391814 UBE2D1P51668 147 aa11.97□□□□□ -0.49
SHANK1-204ENST00000391814 M0R2N4 97 aa11.97□□□□□ -0.49
SHANK1-204ENST00000391814 IGFL2Q6UWQ7 119 aa11.97□□□□□ -0.49
SHANK1-204ENST00000391814 LINC00574Q9H8X3 128 aa11.97□□□□□ -0.49
SHANK1-204ENST00000391814 C9orf85Q96MD7 179 aa11.97□□□□□ -0.49
SHANK1-204ENST00000391814 PLA2G2CQ5R387 149 aa11.96□□□□□ -0.49
SHANK1-204ENST00000391814 RNASE3P12724 160 aaKnown RBP11.96□□□□□ -0.49
SHANK1-204ENST00000391814 NOTCH3Q9UM47 2321 aa11.96□□□□□ -0.5
SHANK1-204ENST00000391814 LYRM9A8MSI8 78 aa11.96□□□□□ -0.5
SHANK1-204ENST00000391814 PSPHP1O15172 72 aa11.96□□□□□ -0.5
SHANK1-204ENST00000391814 GTF3C1Q12789 2109 aa11.95□□□□□ -0.5
SHANK1-204ENST00000391814 A0A087WYN8 130 aa11.95□□□□□ -0.5
SHANK1-204ENST00000391814 TMEM89A2RUT3 159 aa11.95□□□□□ -0.5
SHANK1-204ENST00000391814 IGKV2-28A0A075B6P5 120 aa11.95□□□□□ -0.5
SHANK1-204ENST00000391814 IGKV2D-28P01615 120 aa11.95□□□□□ -0.5
SHANK1-204ENST00000391814 TRBV6-8A0A0A6YYG3 113 aa11.94□□□□□ -0.5
SHANK1-204ENST00000391814 WISP2O76076 250 aa11.94□□□□□ -0.5
SHANK1-204ENST00000391814 DSCAML1Q8TD84 2053 aa11.94□□□□□ -0.5
SHANK1-204ENST00000391814 NOTCH4Q99466 2003 aa11.94□□□□□ -0.5
SHANK1-204ENST00000391814 RIF1Q5UIP0 2472 aaKnown RBP11.94□□□□□ -0.5
SHANK1-204ENST00000391814 PRYO14603 147 aa11.94□□□□□ -0.5
SHANK1-204ENST00000391814 SHISA2Q6UWI4 295 aa11.94□□□□□ -0.5
SHANK1-204ENST00000391814 IGLV4-69A0A075B6H9 119 aa11.93□□□□□ -0.5
SHANK1-204ENST00000391814 TSPEAR-AS2P59090 65 aa11.93□□□□□ -0.5
SHANK1-204ENST00000391814 UBE2D3P61077 147 aa11.93□□□□□ -0.5
SHANK1-204ENST00000391814 UBE2D2P62837 147 aa11.93□□□□□ -0.5
SHANK1-204ENST00000391814 ATG2AQ2TAZ0 1938 aa11.92□□□□□ -0.5
SHANK1-204ENST00000391814 K7EQG2 157 aa11.92□□□□□ -0.5
SHANK1-204ENST00000391814 C11orf45Q8TAV5 145 aa11.91□□□□□ -0.5
SHANK1-204ENST00000391814 WFDC10AQ9H1F0 79 aa11.91□□□□□ -0.5
SHANK1-204ENST00000391814 ROS1P08922 2347 aa11.91□□□□□ -0.5
SHANK1-204ENST00000391814 PLCE1Q9P212 2302 aa11.91□□□□□ -0.5
SHANK1-204ENST00000391814 CRYGDP07320 174 aa11.91□□□□□ -0.5
SHANK1-204ENST00000391814 ADORA2A-AS1P86434 159 aa11.91□□□□□ -0.5
SHANK1-204ENST00000391814 CDIP1Q9H305 208 aa11.91□□□□□ -0.5
SHANK1-204ENST00000391814 LOC100131303A0A0U1RQF7 123 aa11.9□□□□□ -0.5
SHANK1-204ENST00000391814 PKDREJQ9NTG1 2253 aa11.9□□□□□ -0.5
SHANK1-204ENST00000391814 IGIPA6NJ69 53 aa11.89□□□□□ -0.51
SHANK1-204ENST00000391814 TANC2Q9HCD6 1990 aa11.89□□□□□ -0.51
SHANK1-204ENST00000391814 PRM2P04554 102 aa11.89□□□□□ -0.51
SHANK1-204ENST00000391814 IGLV2-18A0A075B6J9 118 aa11.88□□□□□ -0.51
SHANK1-204ENST00000391814 Q8N9L7 120 aa11.88□□□□□ -0.51
SHANK1-204ENST00000391814 POLR2KP53803 58 aaKnown RBP11.88□□□□□ -0.51
SHANK1-204ENST00000391814 PCNX2A6NKB5 2137 aa11.87□□□□□ -0.51
SHANK1-204ENST00000391814 WNK2Q9Y3S1 2297 aa11.87□□□□□ -0.51
SHANK1-204ENST00000391814 SHANK1Q9Y566 2161 aa11.87□□□□□ -0.51
SHANK1-204ENST00000391814 ZNF843Q8N446 348 aa11.87□□□□□ -0.51
SHANK1-204ENST00000391814 IGLV9-49A0A0B4J1Y8 123 aa11.87□□□□□ -0.51
SHANK1-204ENST00000391814 LY6LH3BQJ8 138 aa11.87□□□□□ -0.51
SHANK1-204ENST00000391814 C2orf16Q68DN1 1984 aa11.87□□□□□ -0.51
SHANK1-204ENST00000391814 RPL37AP8A6NKH3 93 aa11.86□□□□□ -0.51
SHANK1-204ENST00000391814 COX6A2Q02221 97 aa11.86□□□□□ -0.51
SHANK1-204ENST00000391814 C4orf26Q17RF5 130 aa11.86□□□□□ -0.51
SHANK1-204ENST00000391814 Q8N814 137 aa11.86□□□□□ -0.51
SHANK1-204ENST00000391814 RETNLBQ9BQ08 111 aa11.86□□□□□ -0.51
SHANK1-204ENST00000391814 LINC00959A0A1B0GUT2 108 aa11.85□□□□□ -0.51
SHANK1-204ENST00000391814 DNAJC9-AS1A6NH13 148 aa11.85□□□□□ -0.51
SHANK1-204ENST00000391814 PIP4P1Q86T03 277 aa11.85□□□□□ -0.51
SHANK1-204ENST00000391814 ADAMTSL4-AS1Q5T5F5 129 aa11.85□□□□□ -0.51
SHANK1-204ENST00000391814 M0R378 163 aa11.85□□□□□ -0.51
SHANK1-204ENST00000391814 TRBV7-6A0A0J9YX20 115 aa11.85□□□□□ -0.51
SHANK1-204ENST00000391814 HILS1P60008 231 aa11.85□□□□□ -0.51
SHANK1-204ENST00000391814 NTM-AS1Q6ZSK4 140 aa11.84□□□□□ -0.51
SHANK1-204ENST00000391814 GPR179Q6PRD1 2367 aa11.84□□□□□ -0.51
SHANK1-204ENST00000391814 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.84□□□□□ -0.51
SHANK1-204ENST00000391814 LY6G6CO95867 125 aa11.84□□□□□ -0.51
SHANK1-204ENST00000391814 DHRS4-AS1Q9P1J3 65 aa11.84□□□□□ -0.51
SHANK1-204ENST00000391814 DEFB114Q30KQ6 69 aa11.83□□□□□ -0.52
SHANK1-204ENST00000391814 TRBV6-4A0A1B0GX49 114 aa11.83□□□□□ -0.52
SHANK1-204ENST00000391814 C14orf177Q52M58 125 aa11.83□□□□□ -0.52
SHANK1-204ENST00000391814 X6R8D5 127 aa11.83□□□□□ -0.52
SHANK1-204ENST00000391814 ZNF73O43830 326 aaPredicted RBP11.82□□□□□ -0.52
SHANK1-204ENST00000391814 ZNF580Q9UK33 172 aa11.82□□□□□ -0.52
SHANK1-204ENST00000391814 KIR2DL5BQ8NHK3 375 aa11.82□□□□□ -0.52
SHANK1-204ENST00000391814 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.82□□□□□ -0.52
SHANK1-204ENST00000391814 A0A1W2PNU3 283 aaPredicted RBP11.81□□□□□ -0.52
SHANK1-204ENST00000391814 COX17Q14061 63 aa11.81□□□□□ -0.52
SHANK1-204ENST00000391814 EML5Q05BV3 1969 aa11.81□□□□□ -0.52
SHANK1-204ENST00000391814 BEAN1Q3B7T3 259 aa11.81□□□□□ -0.52
SHANK1-204ENST00000391814 CD164L2Q6UWJ8 174 aa11.81□□□□□ -0.52
SHANK1-204ENST00000391814 BBC3Q96PG8 261 aaPredicted RBP11.81□□□□□ -0.52
SHANK1-204ENST00000391814 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.81□□□□□ -0.52
SHANK1-204ENST00000391814 C10orf99Q6UWK7 81 aa11.81□□□□□ -0.52
SHANK1-204ENST00000391814 PRO0628Q9UI54 55 aa11.81□□□□□ -0.52
SHANK1-204ENST00000391814 CNFNQ9BYD5 112 aa11.8□□□□□ -0.52
SHANK1-204ENST00000391814 LINC00208Q96KT6 92 aa11.8□□□□□ -0.52
SHANK1-204ENST00000391814 MED13Q9UHV7 2174 aa11.8□□□□□ -0.52
SHANK1-204ENST00000391814 LINC00482Q8N8I6 264 aa11.8□□□□□ -0.52
SHANK1-204ENST00000391814 A0A096LNJ9 63 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms