RNA–Protein interactions for RNA: ENST00000376707.4

VSX1-201, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-201ENST00000376707 HIGD2BQ4VC39 106 aa13.38□□□□□ -0.27
VSX1-201ENST00000376707 AMN1Q8IY45 258 aa13.38□□□□□ -0.27
VSX1-201ENST00000376707 SMDT1Q9H4I9 107 aa13.37□□□□□ -0.27
VSX1-201ENST00000376707 NAT8BQ9UHF3 227 aa13.37□□□□□ -0.27
VSX1-201ENST00000376707 TMEM101Q96IK0 257 aa13.36□□□□□ -0.27
VSX1-201ENST00000376707 BTF3L4Q96K17 158 aa13.36□□□□□ -0.27
VSX1-201ENST00000376707 TMEM242Q9NWH2 141 aa13.36□□□□□ -0.27
VSX1-201ENST00000376707 NAT8Q9UHE5 227 aa13.36□□□□□ -0.27
VSX1-201ENST00000376707 COX6A2Q02221 97 aa13.35□□□□□ -0.27
VSX1-201ENST00000376707 PEA15Q15121 130 aa13.35□□□□□ -0.27
VSX1-201ENST00000376707 OR5A1Q8NGJ0 315 aa13.35□□□□□ -0.27
VSX1-201ENST00000376707 PKHD1L1Q86WI1 4243 aa13.34□□□□□ -0.27
VSX1-201ENST00000376707 SRSF3P84103 164 aaKnown RBP13.34□□□□□ -0.27
VSX1-201ENST00000376707 ADIRFQ15847 76 aa13.34□□□□□ -0.27
VSX1-201ENST00000376707 MRPL52Q86TS9 123 aaKnown RBP13.34□□□□□ -0.27
VSX1-201ENST00000376707 PLAC8Q9NZF1 115 aa13.34□□□□□ -0.27
VSX1-201ENST00000376707 GVQW2A0A096LPI5 108 aaPredicted RBP13.33□□□□□ -0.28
VSX1-201ENST00000376707 SMIM27A0A1W2PRY6 76 aa13.33□□□□□ -0.28
VSX1-201ENST00000376707 PPP1R17O96001 155 aa13.33□□□□□ -0.28
VSX1-201ENST00000376707 Q6ZRU5 148 aa13.33□□□□□ -0.28
VSX1-201ENST00000376707 NRACQ8N912 160 aa13.33□□□□□ -0.28
VSX1-201ENST00000376707 PLA2G2DQ9UNK4 145 aa13.33□□□□□ -0.28
VSX1-201ENST00000376707 HMCN2Q8NDA2 5059 aa13.33□□□□□ -0.28
VSX1-201ENST00000376707 VCYO14598 125 aa13.32□□□□□ -0.28
VSX1-201ENST00000376707 XCL1P47992 114 aa13.32□□□□□ -0.28
VSX1-201ENST00000376707 FOXI1Q12951 378 aa13.32□□□□□ -0.28
VSX1-201ENST00000376707 C7orf33Q8WU49 177 aa13.32□□□□□ -0.28
VSX1-201ENST00000376707 IGKV2-24A0A0C4DH68 120 aa13.31□□□□□ -0.28
VSX1-201ENST00000376707 C7orf77A4D0Y5 90 aa13.31□□□□□ -0.28
VSX1-201ENST00000376707 SMKR1H3BMG3 65 aa13.31□□□□□ -0.28
VSX1-201ENST00000376707 MAJINQ3KP22 176 aa13.31□□□□□ -0.28
VSX1-201ENST00000376707 PRSS3P2Q8NHM4 247 aa13.31□□□□□ -0.28
VSX1-201ENST00000376707 CDC42SE2Q9NRR3 84 aa13.31□□□□□ -0.28
VSX1-201ENST00000376707 LINC00959A0A1B0GUT2 108 aa13.3□□□□□ -0.28
VSX1-201ENST00000376707 CCL25O15444 150 aa13.3□□□□□ -0.28
VSX1-201ENST00000376707 SUMO2P61956 95 aaKnown RBP13.3□□□□□ -0.28
VSX1-201ENST00000376707 FAM104BQ5XKR9 115 aa13.3□□□□□ -0.28
VSX1-201ENST00000376707 A0A1B0GW15 77 aa13.29□□□□□ -0.28
VSX1-201ENST00000376707 PHOX2AO14813 284 aa13.29□□□□□ -0.28
VSX1-201ENST00000376707 MRPL51Q4U2R6 128 aaKnown RBP13.29□□□□□ -0.28
VSX1-201ENST00000376707 ZNF664Q8N3J9 261 aa13.28□□□□□ -0.28
VSX1-201ENST00000376707 IGHV1-58A0A0C4DH39 117 aa13.27□□□□□ -0.29
VSX1-201ENST00000376707 LINC00862A6NCI5 91 aa13.27□□□□□ -0.29
VSX1-201ENST00000376707 PPP1R2P9O14990 202 aa13.27□□□□□ -0.29
VSX1-201ENST00000376707 FCER1GP30273 86 aa13.27□□□□□ -0.29
VSX1-201ENST00000376707 SS18Q15532 418 aa13.27□□□□□ -0.29
VSX1-201ENST00000376707 STPG4Q8N801 248 aa13.27□□□□□ -0.29
VSX1-201ENST00000376707 CSDC2Q9Y534 153 aaKnown RBP13.27□□□□□ -0.29
VSX1-201ENST00000376707 TRBV24-1A0A075B6N3 115 aa13.26□□□□□ -0.29
VSX1-201ENST00000376707 MT1HL1P0DM35 61 aa13.26□□□□□ -0.29
VSX1-201ENST00000376707 CAMPP49913 170 aa13.26□□□□□ -0.29
VSX1-201ENST00000376707 KIR2DL4Q99706 377 aa13.26□□□□□ -0.29
VSX1-201ENST00000376707 C20orf78Q9BR46 151 aa13.26□□□□□ -0.29
VSX1-201ENST00000376707 PKIGQ9Y2B9 76 aa13.26□□□□□ -0.29
VSX1-201ENST00000376707 CD164L2Q6UWJ8 174 aa13.25□□□□□ -0.29
VSX1-201ENST00000376707 A0A096LNI7 61 aa13.24□□□□□ -0.29
VSX1-201ENST00000376707 RPL32P62910 135 aaKnown RBP13.24□□□□□ -0.29
VSX1-201ENST00000376707 SMAGPQ0VAQ4 97 aa13.24□□□□□ -0.29
VSX1-201ENST00000376707 LINC00526Q96FQ7 95 aa13.24□□□□□ -0.29
VSX1-201ENST00000376707 UBE2D4Q9Y2X8 147 aa13.24□□□□□ -0.29
VSX1-201ENST00000376707 CARD19Q96LW7 228 aa13.23□□□□□ -0.29
VSX1-201ENST00000376707 LINC00474Q9P2X8 69 aa13.23□□□□□ -0.29
VSX1-201ENST00000376707 A0A1B0GXF2 115 aa13.22□□□□□ -0.29
VSX1-201ENST00000376707 ZNF561-AS1K7EIQ3 104 aa13.22□□□□□ -0.29
VSX1-201ENST00000376707 S100A8P05109 93 aa13.22□□□□□ -0.29
VSX1-201ENST00000376707 CKS2P33552 79 aa13.22□□□□□ -0.29
VSX1-201ENST00000376707 HBBP68871 147 aa13.21□□□□□ -0.29
VSX1-201ENST00000376707 TIMM21Q9BVV7 248 aa13.21□□□□□ -0.29
VSX1-201ENST00000376707 C1orf196B1AJZ1 125 aa13.2□□□□□ -0.3
VSX1-201ENST00000376707 F8W036 122 aa13.2□□□□□ -0.3
VSX1-201ENST00000376707 TCAPO15273 167 aa13.2□□□□□ -0.3
VSX1-201ENST00000376707 TNFRSF6BO95407 300 aa13.2□□□□□ -0.3
VSX1-201ENST00000376707 PRR3P79522 188 aaKnown RBP13.2□□□□□ -0.3
VSX1-201ENST00000376707 MRPL54Q6P161 138 aaKnown RBP13.2□□□□□ -0.3
VSX1-201ENST00000376707 SYCNQ0VAF6 134 aa13.19□□□□□ -0.3
VSX1-201ENST00000376707 TMEM18Q96B42 140 aa13.19□□□□□ -0.3
VSX1-201ENST00000376707 D6R8Y8 96 aa13.18□□□□□ -0.3
VSX1-201ENST00000376707 MALP21145 153 aa13.18□□□□□ -0.3
VSX1-201ENST00000376707 PPBPP02775 128 aa13.17□□□□□ -0.3
VSX1-201ENST00000376707 ATP5L2Q7Z4Y8 100 aa13.17□□□□□ -0.3
VSX1-201ENST00000376707 SMIM2Q9BVW6 85 aa13.17□□□□□ -0.3
VSX1-201ENST00000376707 COX7A2LO14548 114 aa13.16□□□□□ -0.3
VSX1-201ENST00000376707 NPYP01303 97 aa13.15□□□□□ -0.3
VSX1-201ENST00000376707 RNASE13Q5GAN3 156 aaKnown RBP13.15□□□□□ -0.3
VSX1-201ENST00000376707 Q6ZUT4 128 aa13.15□□□□□ -0.3
VSX1-201ENST00000376707 UBR4Q5T4S7 5183 aa13.14□□□□□ -0.31
VSX1-201ENST00000376707 IGLV4-69A0A075B6H9 119 aa13.14□□□□□ -0.31
VSX1-201ENST00000376707 TRAV13-1A0A0B4J241 112 aa13.14□□□□□ -0.31
VSX1-201ENST00000376707 RPL39P62891 51 aaKnown RBP13.13□□□□□ -0.31
VSX1-201ENST00000376707 PNRC1Q12796 327 aaPredicted RBP13.13□□□□□ -0.31
VSX1-201ENST00000376707 FAM104AQ969W3 186 aa13.13□□□□□ -0.31
VSX1-201ENST00000376707 SPANXA1Q9NS26 97 aa13.13□□□□□ -0.31
VSX1-201ENST00000376707 LOC107984640A0A0U1RRK4 108 aa13.12□□□□□ -0.31
VSX1-201ENST00000376707 ORMDL3Q8N138 153 aa13.12□□□□□ -0.31
VSX1-201ENST00000376707 PTTG1IPP53801 180 aa13.11□□□□□ -0.31
VSX1-201ENST00000376707 RAB14P61106 215 aa13.11□□□□□ -0.31
VSX1-201ENST00000376707 MRPS36P82909 103 aaKnown RBP13.11□□□□□ -0.31
VSX1-201ENST00000376707 GAGE2BQ13066 116 aa13.11□□□□□ -0.31
VSX1-201ENST00000376707 LINC01600Q96MT4 127 aa13.11□□□□□ -0.31
VSX1-201ENST00000376707 CAMK2N2Q96S95 79 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms