RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 TIMM21Q9BVV7 248 aa9.63□□□□□ -0.87
PTPRF-202ENST00000372405 MRPS16Q9Y3D3 137 aaKnown RBP9.63□□□□□ -0.87
PTPRF-202ENST00000372405 PAPPA-AS1Q5QFB9 102 aa9.63□□□□□ -0.87
PTPRF-202ENST00000372405 NFE4Q86UQ8 179 aa9.63□□□□□ -0.87
PTPRF-202ENST00000372405 A0A0J9YXV3 536 aa9.62□□□□□ -0.87
PTPRF-202ENST00000372405 K7EIL1 84 aa9.62□□□□□ -0.87
PTPRF-202ENST00000372405 PAX4O43316 350 aa9.62□□□□□ -0.87
PTPRF-202ENST00000372405 ATP5G1P05496 136 aa9.62□□□□□ -0.87
PTPRF-202ENST00000372405 MRPS36P82909 103 aaKnown RBP9.62□□□□□ -0.87
PTPRF-202ENST00000372405 TRBV6-8A0A0A6YYG3 113 aa9.61□□□□□ -0.87
PTPRF-202ENST00000372405 A0A0J9YY99 117 aa9.61□□□□□ -0.87
PTPRF-202ENST00000372405 C12orf74Q32Q52 190 aa9.61□□□□□ -0.87
PTPRF-202ENST00000372405 KPRPQ5T749 579 aaPredicted RBP9.61□□□□□ -0.87
PTPRF-202ENST00000372405 TMEM243Q9BU79 118 aa9.61□□□□□ -0.87
PTPRF-202ENST00000372405 CHAC1Q9BUX1 264 aa9.61□□□□□ -0.87
PTPRF-202ENST00000372405 DLEU1O43261 78 aa9.61□□□□□ -0.87
PTPRF-202ENST00000372405 MAPKAPK5-AS1Q8N8E1 139 aa9.61□□□□□ -0.87
PTPRF-202ENST00000372405 CSDC2Q9Y534 153 aaKnown RBP9.61□□□□□ -0.87
PTPRF-202ENST00000372405 TRBV25-1A0A075B6N4 114 aa9.6□□□□□ -0.87
PTPRF-202ENST00000372405 ATP6V0E2Q8NHE4 81 aa9.6□□□□□ -0.87
PTPRF-202ENST00000372405 TRAV26-1A0A087WT03 109 aa9.59□□□□□ -0.87
PTPRF-202ENST00000372405 A0A096LPF7 62 aa9.59□□□□□ -0.87
PTPRF-202ENST00000372405 E9PLD3 99 aa9.59□□□□□ -0.87
PTPRF-202ENST00000372405 F5H768 121 aa9.59□□□□□ -0.87
PTPRF-202ENST00000372405 ZNF22P17026 224 aaPredicted RBP9.59□□□□□ -0.87
PTPRF-202ENST00000372405 TRAV8-6A0A0B4J262 113 aa9.59□□□□□ -0.87
PTPRF-202ENST00000372405 HTN3P15516 51 aa9.59□□□□□ -0.87
PTPRF-202ENST00000372405 TMEM170BQ5T4T1 132 aa9.59□□□□□ -0.87
PTPRF-202ENST00000372405 C11orf68Q9H3H3 251 aaKnown RBP9.59□□□□□ -0.87
PTPRF-202ENST00000372405 HUWE1Q7Z6Z7 4374 aaKnown RBP9.58□□□□□ -0.88
PTPRF-202ENST00000372405 UBE2D1P51668 147 aa9.58□□□□□ -0.88
PTPRF-202ENST00000372405 DGAT2L7PQ6IED9 249 aa9.58□□□□□ -0.88
PTPRF-202ENST00000372405 CDC42SE2Q9NRR3 84 aa9.58□□□□□ -0.88
PTPRF-202ENST00000372405 A0A0J9YWU9 116 aa9.57□□□□□ -0.88
PTPRF-202ENST00000372405 TEX48A0A1B0GUV7 120 aa9.57□□□□□ -0.88
PTPRF-202ENST00000372405 H7C423 109 aa9.57□□□□□ -0.88
PTPRF-202ENST00000372405 UBE2L6O14933 153 aa9.57□□□□□ -0.88
PTPRF-202ENST00000372405 HINT1P49773 126 aaPredicted RBP9.57□□□□□ -0.88
PTPRF-202ENST00000372405 GAGE6Q13070 117 aa9.57□□□□□ -0.88
PTPRF-202ENST00000372405 MPV17L2Q567V2 206 aa9.57□□□□□ -0.88
PTPRF-202ENST00000372405 COL5A1-AS1Q5SY13 56 aa9.57□□□□□ -0.88
PTPRF-202ENST00000372405 TMEM223A0PJW6 202 aa9.56□□□□□ -0.88
PTPRF-202ENST00000372405 TSPEAR-AS2P59090 65 aa9.56□□□□□ -0.88
PTPRF-202ENST00000372405 BATFQ16520 125 aa9.56□□□□□ -0.88
PTPRF-202ENST00000372405 OR5A1Q8NGJ0 315 aa9.56□□□□□ -0.88
PTPRF-202ENST00000372405 IGLV4-60A0A075B6I1 120 aa9.55□□□□□ -0.88
PTPRF-202ENST00000372405 TINCRA0A1B0GVN0 87 aa9.55□□□□□ -0.88
PTPRF-202ENST00000372405 SIVA1O15304 175 aa9.55□□□□□ -0.88
PTPRF-202ENST00000372405 TMEM97Q5BJF2 176 aa9.55□□□□□ -0.88
PTPRF-202ENST00000372405 AMMECR1LQ6DCA0 310 aa9.55□□□□□ -0.88
PTPRF-202ENST00000372405 CHCHD5Q9BSY4 110 aa9.55□□□□□ -0.88
PTPRF-202ENST00000372405 Q6ZTC4 211 aa9.55□□□□□ -0.88
PTPRF-202ENST00000372405 TM2D3Q9BRN9 247 aa9.55□□□□□ -0.88
PTPRF-202ENST00000372405 ZNF25P17030 456 aaPredicted RBP9.54□□□□□ -0.88
PTPRF-202ENST00000372405 DEFB121Q5J5C9 76 aa9.54□□□□□ -0.88
PTPRF-202ENST00000372405 HERVK_113P61574 105 aa9.54□□□□□ -0.88
PTPRF-202ENST00000372405 COX6A2Q02221 97 aa9.54□□□□□ -0.88
PTPRF-202ENST00000372405 LINC00242Q5T6M2 205 aa9.54□□□□□ -0.88
PTPRF-202ENST00000372405 MRAPQ8TCY5 172 aa9.54□□□□□ -0.88
PTPRF-202ENST00000372405 MYMXA0A1B0GTQ4 84 aa9.53□□□□□ -0.88
PTPRF-202ENST00000372405 SMAGPQ0VAQ4 97 aa9.53□□□□□ -0.88
PTPRF-202ENST00000372405 BVES-AS1Q5T3Y7 98 aa9.53□□□□□ -0.88
PTPRF-202ENST00000372405 FAM19A3Q7Z5A8 133 aa9.53□□□□□ -0.88
PTPRF-202ENST00000372405 TMEM101Q96IK0 257 aa9.53□□□□□ -0.88
PTPRF-202ENST00000372405 HIGD1BQ9P298 99 aa9.53□□□□□ -0.88
PTPRF-202ENST00000372405 IGHV3-64A0A075B6Q5 118 aa9.52□□□□□ -0.89
PTPRF-202ENST00000372405 IGLV5-45A0A087WSX0 123 aa9.52□□□□□ -0.89
PTPRF-202ENST00000372405 TRAV13-1A0A0B4J241 112 aa9.52□□□□□ -0.89
PTPRF-202ENST00000372405 SPATA25Q9BR10 227 aa9.52□□□□□ -0.89
PTPRF-202ENST00000372405 CDKN2A-AS1Q9UH64 79 aa9.52□□□□□ -0.89
PTPRF-202ENST00000372405 TIRAPP58753 221 aa9.52□□□□□ -0.89
PTPRF-202ENST00000372405 NANOS2P60321 138 aaKnown RBP9.52□□□□□ -0.89
PTPRF-202ENST00000372405 MRPL23Q16540 153 aaKnown RBP9.52□□□□□ -0.89
PTPRF-202ENST00000372405 TRAV8-3A0A0A6YYJ7 113 aa9.51□□□□□ -0.89
PTPRF-202ENST00000372405 ZNF815PA8K554 130 aa9.51□□□□□ -0.89
PTPRF-202ENST00000372405 J3QQQ9 107 aa9.51□□□□□ -0.89
PTPRF-202ENST00000372405 ICOSQ9Y6W8 199 aa9.51□□□□□ -0.89
PTPRF-202ENST00000372405 LEPROTO15243 131 aa9.5□□□□□ -0.89
PTPRF-202ENST00000372405 PLEKHB2Q96CS7 222 aa9.5□□□□□ -0.89
PTPRF-202ENST00000372405 GEMIN7Q9H840 131 aaKnown RBP9.5□□□□□ -0.89
PTPRF-202ENST00000372405 COL7A1Q02388 2944 aa9.5□□□□□ -0.89
PTPRF-202ENST00000372405 DNHD1Q96M86 4753 aa9.5□□□□□ -0.89
PTPRF-202ENST00000372405 DNAH9Q9NYC9 4486 aa9.5□□□□□ -0.89
PTPRF-202ENST00000372405 RBX1P62877 108 aa9.5□□□□□ -0.89
PTPRF-202ENST00000372405 A0A1B0GUV1 79 aa9.49□□□□□ -0.89
PTPRF-202ENST00000372405 SPINK8P0C7L1 97 aa9.49□□□□□ -0.89
PTPRF-202ENST00000372405 IGHV3-30-3P0DP02 117 aa9.49□□□□□ -0.89
PTPRF-202ENST00000372405 HSD52Q0P140 79 aa9.49□□□□□ -0.89
PTPRF-202ENST00000372405 Q8N3U1 123 aa9.49□□□□□ -0.89
PTPRF-202ENST00000372405 C11orf45Q8TAV5 145 aa9.49□□□□□ -0.89
PTPRF-202ENST00000372405 IGHV1-58A0A0C4DH39 117 aa9.48□□□□□ -0.89
PTPRF-202ENST00000372405 HERVK_113P63121 156 aa9.48□□□□□ -0.89
PTPRF-202ENST00000372405 TMEM262E9PQX1 116 aa9.48□□□□□ -0.89
PTPRF-202ENST00000372405 IGKV3OR2-268A0A0C4DH90 116 aa9.47□□□□□ -0.89
PTPRF-202ENST00000372405 H3BNG1 76 aa9.47□□□□□ -0.89
PTPRF-202ENST00000372405 SH2D6Q7Z4S9 175 aa9.47□□□□□ -0.89
PTPRF-202ENST00000372405 LGALS3P17931 250 aaKnown RBP9.46□□□□□ -0.89
PTPRF-202ENST00000372405 SEC11AP67812 179 aa9.46□□□□□ -0.89
PTPRF-202ENST00000372405 LELP1Q5T871 98 aa9.46□□□□□ -0.9
PTPRF-202ENST00000372405 LYPD5Q6UWN5 251 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 104.4 ms