RNA–Protein interactions for RNA: ENST00000364739.1

RNU4-28P-201, Transcript of RNA, U4 small nuclear 28, pseudogene, humanhuman

BASIC

Gene RNU4-28P, Length 141 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-28P-201ENST00000364739 NSD3Q9BZ95 1437 aa-1.38□□□□□ -2.63
RNU4-28P-201ENST00000364739 FAM236AA0A1B0GUQ0 79 aa-1.38□□□□□ -2.63
RNU4-28P-201ENST00000364739 FAM236BA0A1B0GV22 79 aa-1.38□□□□□ -2.63
RNU4-28P-201ENST00000364739 TCRBV3S1A0A5B6 114 aa-1.38□□□□□ -2.63
RNU4-28P-201ENST00000364739 SYS1-DBNDD2H3BUS1 97 aa-1.38□□□□□ -2.63
RNU4-28P-201ENST00000364739 COX4I1P13073 169 aa-1.38□□□□□ -2.63
RNU4-28P-201ENST00000364739 S100A3P33764 101 aa-1.38□□□□□ -2.63
RNU4-28P-201ENST00000364739 FAM74A4Q5TZK3 123 aa-1.38□□□□□ -2.63
RNU4-28P-201ENST00000364739 MNS1Q8NEH6 495 aa-1.38□□□□□ -2.63
RNU4-28P-201ENST00000364739 SPRR4Q96PI1 79 aa-1.38□□□□□ -2.63
RNU4-28P-201ENST00000364739 GID8Q9NWU2 228 aa-1.38□□□□□ -2.63
RNU4-28P-201ENST00000364739 ATP10BO94823 1461 aa-1.38□□□□□ -2.63
RNU4-28P-201ENST00000364739 A2MP01023 1474 aa-1.38□□□□□ -2.63
RNU4-28P-201ENST00000364739 MBD5Q9P267 1494 aa-1.38□□□□□ -2.63
RNU4-28P-201ENST00000364739 TIAM2Q8IVF5 1701 aa-1.39□□□□□ -2.63
RNU4-28P-201ENST00000364739 MARF1Q9Y4F3 1742 aaKnown RBP-1.39□□□□□ -2.63
RNU4-28P-201ENST00000364739 NPFFO15130 113 aa-1.39□□□□□ -2.63
RNU4-28P-201ENST00000364739 E2F6O75461 281 aa-1.39□□□□□ -2.63
RNU4-28P-201ENST00000364739 COX8AP10176 69 aa-1.39□□□□□ -2.63
RNU4-28P-201ENST00000364739 ACYP2P14621 99 aa-1.39□□□□□ -2.63
RNU4-28P-201ENST00000364739 GCHFRP30047 84 aa-1.39□□□□□ -2.63
RNU4-28P-201ENST00000364739 TMEM78Q5T7P6 136 aa-1.39□□□□□ -2.63
RNU4-28P-201ENST00000364739 TMEM242Q9NWH2 141 aa-1.39□□□□□ -2.63
RNU4-28P-201ENST00000364739 NDUFAF1Q9Y375 327 aa-1.39□□□□□ -2.63
RNU4-28P-201ENST00000364739 XIRP1Q702N8 1843 aaKnown RBP-1.39□□□□□ -2.63
RNU4-28P-201ENST00000364739 NCOA3Q9Y6Q9 1424 aa-1.4□□□□□ -2.63
RNU4-28P-201ENST00000364739 ARFGEF1Q9Y6D6 1849 aa-1.4□□□□□ -2.63
RNU4-28P-201ENST00000364739 A0A1W2PRE2 83 aa-1.4□□□□□ -2.63
RNU4-28P-201ENST00000364739 RBAKDNA6NC62 111 aa-1.4□□□□□ -2.63
RNU4-28P-201ENST00000364739 I3L2K1 104 aa-1.4□□□□□ -2.63
RNU4-28P-201ENST00000364739 SLC25A5P05141 298 aaKnown RBP-1.4□□□□□ -2.63
RNU4-28P-201ENST00000364739 RPS28P62857 69 aaKnown RBP-1.4□□□□□ -2.63
RNU4-28P-201ENST00000364739 KRTAP19-2Q3LHN2 52 aa-1.4□□□□□ -2.63
RNU4-28P-201ENST00000364739 ATP11AUNQ6ZP68 121 aa-1.4□□□□□ -2.63
RNU4-28P-201ENST00000364739 TTTY10Q9BZA0 68 aa-1.4□□□□□ -2.63
RNU4-28P-201ENST00000364739 MRC1P22897 1456 aa-1.4□□□□□ -2.63
RNU4-28P-201ENST00000364739 KDM5CP41229 1560 aa-1.4□□□□□ -2.63
RNU4-28P-201ENST00000364739 PHIPQ8WWQ0 1821 aa-1.4□□□□□ -2.63
RNU4-28P-201ENST00000364739 CPSF4LA6NMK7 179 aaKnown RBP-1.41□□□□□ -2.64
RNU4-28P-201ENST00000364739 A8MTW9 85 aa-1.41□□□□□ -2.64
RNU4-28P-201ENST00000364739 BCE1O60756 84 aa-1.41□□□□□ -2.64
RNU4-28P-201ENST00000364739 RPL7P18124 248 aaKnown RBP-1.41□□□□□ -2.64
RNU4-28P-201ENST00000364739 POLR2HP52434 150 aaKnown RBP-1.41□□□□□ -2.64
RNU4-28P-201ENST00000364739 THEM6Q8WUY1 208 aa-1.41□□□□□ -2.64
RNU4-28P-201ENST00000364739 PPDPFLQ8WWR9 84 aa-1.41□□□□□ -2.64
RNU4-28P-201ENST00000364739 PP6455Q8WZ26 134 aa-1.41□□□□□ -2.64
RNU4-28P-201ENST00000364739 NAA60Q9H7X0 242 aa-1.41□□□□□ -2.64
RNU4-28P-201ENST00000364739 ALKQ9UM73 1620 aa-1.41□□□□□ -2.64
RNU4-28P-201ENST00000364739 PRDM15P57071 1507 aaPredicted RBP-1.41□□□□□ -2.64
RNU4-28P-201ENST00000364739 PLXNC1O60486 1568 aa-1.42□□□□□ -2.64
RNU4-28P-201ENST00000364739 MMP24-AS1A0A0U1RRL7 71 aa-1.42□□□□□ -2.64
RNU4-28P-201ENST00000364739 FAM223BA6NKX1 122 aa-1.42□□□□□ -2.64
RNU4-28P-201ENST00000364739 UQCRQO14949 82 aa-1.42□□□□□ -2.64
RNU4-28P-201ENST00000364739 PIN1P1O15428 100 aa-1.42□□□□□ -2.64
RNU4-28P-201ENST00000364739 CMPK1P30085 196 aa-1.42□□□□□ -2.64
RNU4-28P-201ENST00000364739 RPL22P35268 128 aaKnown RBP-1.42□□□□□ -2.64
RNU4-28P-201ENST00000364739 CFAP126Q5VTH2 177 aa-1.42□□□□□ -2.64
RNU4-28P-201ENST00000364739 OR2T2Q6IF00 324 aa-1.42□□□□□ -2.64
RNU4-28P-201ENST00000364739 MRPL34Q9BQ48 92 aaKnown RBP-1.42□□□□□ -2.64
RNU4-28P-201ENST00000364739 BOLA2Q9H3K6 86 aa-1.42□□□□□ -2.64
RNU4-28P-201ENST00000364739 GAPVD1Q14C86 1478 aa-1.43□□□□□ -2.64
RNU4-28P-201ENST00000364739 PAPPAQ13219 1627 aa-1.43□□□□□ -2.64
RNU4-28P-201ENST00000364739 TRBV10-3A0A0K0K1G6 114 aa-1.43□□□□□ -2.64
RNU4-28P-201ENST00000364739 PNMA8CA0A1B0GUJ8 204 aa-1.43□□□□□ -2.64
RNU4-28P-201ENST00000364739 TMEM238C9JI98 176 aa-1.43□□□□□ -2.64
RNU4-28P-201ENST00000364739 TCRAP04437 139 aa-1.43□□□□□ -2.64
RNU4-28P-201ENST00000364739 CCL3L1P16619 93 aa-1.43□□□□□ -2.64
RNU4-28P-201ENST00000364739 CYP2G1PQ6ZSU1 146 aa-1.43□□□□□ -2.64
RNU4-28P-201ENST00000364739 SLC25A26Q70HW3 274 aa-1.43□□□□□ -2.64
RNU4-28P-201ENST00000364739 AKAP14Q86UN6 197 aa-1.43□□□□□ -2.64
RNU4-28P-201ENST00000364739 DEFB123Q8N688 67 aa-1.43□□□□□ -2.64
RNU4-28P-201ENST00000364739 CRIPTQ9P021 101 aa-1.43□□□□□ -2.64
RNU4-28P-201ENST00000364739 SMARCA2P51531 1590 aa-1.43□□□□□ -2.64
RNU4-28P-201ENST00000364739 ERCC6L2Q5T890 1561 aa-1.43□□□□□ -2.64
RNU4-28P-201ENST00000364739 PTPRMP28827 1452 aa-1.43□□□□□ -2.64
RNU4-28P-201ENST00000364739 CUX1P39880 1505 aa-1.44□□□□□ -2.64
RNU4-28P-201ENST00000364739 MRPS15P82914 257 aaKnown RBP-1.44□□□□□ -2.64
RNU4-28P-201ENST00000364739 TRIQKQ629K1 86 aa-1.44□□□□□ -2.64
RNU4-28P-201ENST00000364739 ZNF818PQ6ZRF7 136 aa-1.44□□□□□ -2.64
RNU4-28P-201ENST00000364739 BATF3Q9NR55 127 aa-1.44□□□□□ -2.64
RNU4-28P-201ENST00000364739 METTL1Q9UBP6 276 aaKnown RBP-1.44□□□□□ -2.64
RNU4-28P-201ENST00000364739 VPS13AQ96RL7 3174 aa-1.44□□□□□ -2.64
RNU4-28P-201ENST00000364739 LRP6O75581 1613 aa-1.44□□□□□ -2.64
RNU4-28P-201ENST00000364739 KDM5AP29375 1690 aaKnown RBP-1.45□□□□□ -2.64
RNU4-28P-201ENST00000364739 DOCK1Q14185 1865 aa-1.45□□□□□ -2.64
RNU4-28P-201ENST00000364739 TRBV7-1A0A0A6YYK4 115 aa-1.45□□□□□ -2.64
RNU4-28P-201ENST00000364739 TMEM14DPA8MWL7 114 aa-1.45□□□□□ -2.64
RNU4-28P-201ENST00000364739 F8WEM9 126 aa-1.45□□□□□ -2.64
RNU4-28P-201ENST00000364739 PGRMC1O00264 195 aaKnown RBP-1.45□□□□□ -2.64
RNU4-28P-201ENST00000364739 FAM107AO95990 144 aa-1.45□□□□□ -2.64
RNU4-28P-201ENST00000364739 INSL4Q14641 139 aa-1.45□□□□□ -2.64
RNU4-28P-201ENST00000364739 C4orf33Q8N1A6 199 aa-1.45□□□□□ -2.64
RNU4-28P-201ENST00000364739 VPS25Q9BRG1 176 aa-1.45□□□□□ -2.64
RNU4-28P-201ENST00000364739 PRDM2Q13029 1718 aa-1.46□□□□□ -2.64
RNU4-28P-201ENST00000364739 TRAV30A0A087WSZ9 112 aa-1.46□□□□□ -2.64
RNU4-28P-201ENST00000364739 A0A1B0GW64 132 aa-1.46□□□□□ -2.64
RNU4-28P-201ENST00000364739 C20orf202A1L168 122 aa-1.46□□□□□ -2.64
RNU4-28P-201ENST00000364739 M0R2P5 195 aa-1.46□□□□□ -2.64
RNU4-28P-201ENST00000364739 MT-ATP8P03928 68 aa-1.46□□□□□ -2.64
RNU4-28P-201ENST00000364739 S100A5P33763 92 aa-1.46□□□□□ -2.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms