RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 UBE2D4Q9Y2X8 147 aa13.7□□□□□ -0.22
CLN3-205ENST00000359984 ESRGQ1W209 222 aa13.7□□□□□ -0.22
CLN3-205ENST00000359984 LELP1Q5T871 98 aa13.7□□□□□ -0.22
CLN3-205ENST00000359984 A0A1B0GV90 55 aa13.69□□□□□ -0.22
CLN3-205ENST00000359984 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.69□□□□□ -0.22
CLN3-205ENST00000359984 M0R143 59 aa13.69□□□□□ -0.22
CLN3-205ENST00000359984 UBE2L6O14933 153 aa13.69□□□□□ -0.22
CLN3-205ENST00000359984 GAGE6Q13070 117 aa13.69□□□□□ -0.22
CLN3-205ENST00000359984 TIMM17AQ99595 171 aa13.69□□□□□ -0.22
CLN3-205ENST00000359984 PYGO1Q9Y3Y4 419 aa13.69□□□□□ -0.22
CLN3-205ENST00000359984 H7C423 109 aa13.68□□□□□ -0.22
CLN3-205ENST00000359984 FGF6P10767 208 aa13.68□□□□□ -0.22
CLN3-205ENST00000359984 OPRPNQ99935 248 aaPredicted RBP13.68□□□□□ -0.22
CLN3-205ENST00000359984 TGP01266 2768 aa13.68□□□□□ -0.22
CLN3-205ENST00000359984 TMEM141Q96I45 108 aa13.67□□□□□ -0.22
CLN3-205ENST00000359984 TIMM21Q9BVV7 248 aa13.67□□□□□ -0.22
CLN3-205ENST00000359984 SPANXA1Q9NS26 97 aa13.67□□□□□ -0.22
CLN3-205ENST00000359984 PCP4P48539 62 aa13.67□□□□□ -0.22
CLN3-205ENST00000359984 Q6ZN92 141 aa13.67□□□□□ -0.22
CLN3-205ENST00000359984 FAM104AQ969W3 186 aa13.67□□□□□ -0.22
CLN3-205ENST00000359984 NUPR2A6NF83 97 aa13.66□□□□□ -0.22
CLN3-205ENST00000359984 DNAH7Q8WXX0 4024 aa13.66□□□□□ -0.22
CLN3-205ENST00000359984 IGLV4-3A0A075B6K6 122 aa13.65□□□□□ -0.22
CLN3-205ENST00000359984 HSBP1L1C9JCN9 74 aa13.65□□□□□ -0.22
CLN3-205ENST00000359984 PRSS1P07477 247 aa13.65□□□□□ -0.22
CLN3-205ENST00000359984 HNRNPA3P51991 378 aaKnown RBP13.65□□□□□ -0.22
CLN3-205ENST00000359984 AMMECR1LQ6DCA0 310 aa13.65□□□□□ -0.22
CLN3-205ENST00000359984 BAALCQ8WXS3 180 aa13.65□□□□□ -0.22
CLN3-205ENST00000359984 TMEM262E9PQX1 116 aa13.64□□□□□ -0.23
CLN3-205ENST00000359984 ODF1Q14990 250 aa13.64□□□□□ -0.23
CLN3-205ENST00000359984 DGAT2L7PQ6IED9 249 aa13.64□□□□□ -0.23
CLN3-205ENST00000359984 APLNQ9ULZ1 77 aa13.64□□□□□ -0.23
CLN3-205ENST00000359984 KLK5Q9Y337 293 aaPredicted RBP13.64□□□□□ -0.23
CLN3-205ENST00000359984 MRPS16Q9Y3D3 137 aaKnown RBP13.64□□□□□ -0.23
CLN3-205ENST00000359984 CSDC2Q9Y534 153 aaKnown RBP13.64□□□□□ -0.23
CLN3-205ENST00000359984 DYNC2H1Q8NCM8 4307 aaKnown RBP13.64□□□□□ -0.23
CLN3-205ENST00000359984 SMAGPQ0VAQ4 97 aa13.63□□□□□ -0.23
CLN3-205ENST00000359984 ZC2HC1BQ5TFG8 222 aa13.63□□□□□ -0.23
CLN3-205ENST00000359984 NPSP0C0P6 89 aa13.63□□□□□ -0.23
CLN3-205ENST00000359984 Q6ZUT4 128 aa13.63□□□□□ -0.23
CLN3-205ENST00000359984 TRAV8-6A0A0B4J262 113 aa13.62□□□□□ -0.23
CLN3-205ENST00000359984 MRPS36P82909 103 aaKnown RBP13.62□□□□□ -0.23
CLN3-205ENST00000359984 OR5A1Q8NGJ0 315 aa13.62□□□□□ -0.23
CLN3-205ENST00000359984 CSMD3Q7Z407 3707 aa13.61□□□□□ -0.23
CLN3-205ENST00000359984 IGLV4-60A0A075B6I1 120 aa13.61□□□□□ -0.23
CLN3-205ENST00000359984 ZNF25P17030 456 aaPredicted RBP13.61□□□□□ -0.23
CLN3-205ENST00000359984 C21orf62-AS1Q17RA5 79 aa13.61□□□□□ -0.23
CLN3-205ENST00000359984 MPV17L2Q567V2 206 aa13.61□□□□□ -0.23
CLN3-205ENST00000359984 RNASE13Q5GAN3 156 aaKnown RBP13.61□□□□□ -0.23
CLN3-205ENST00000359984 ZFAND6Q6FIF0 208 aa13.61□□□□□ -0.23
CLN3-205ENST00000359984 TMEM101Q96IK0 257 aa13.61□□□□□ -0.23
CLN3-205ENST00000359984 RBX1P62877 108 aa13.61□□□□□ -0.23
CLN3-205ENST00000359984 VCX2Q9H322 139 aa13.61□□□□□ -0.23
CLN3-205ENST00000359984 CDC42SE2Q9NRR3 84 aa13.61□□□□□ -0.23
CLN3-205ENST00000359984 PRSS29PA6NIE9 313 aa13.6□□□□□ -0.23
CLN3-205ENST00000359984 PAPPA-AS1Q5QFB9 102 aa13.6□□□□□ -0.23
CLN3-205ENST00000359984 WFDC10BQ8IUB3 73 aa13.6□□□□□ -0.23
CLN3-205ENST00000359984 Q8N3U1 123 aa13.6□□□□□ -0.23
CLN3-205ENST00000359984 AMELXQ99217 191 aa13.6□□□□□ -0.23
CLN3-205ENST00000359984 TP73-AS1Q9UF72 201 aa13.6□□□□□ -0.23
CLN3-205ENST00000359984 LINC00588Q9Y4M8 146 aa13.6□□□□□ -0.23
CLN3-205ENST00000359984 A0A1B0GUV1 79 aa13.59□□□□□ -0.23
CLN3-205ENST00000359984 CCL18P55774 89 aa13.59□□□□□ -0.23
CLN3-205ENST00000359984 PMVKQ15126 192 aa13.59□□□□□ -0.23
CLN3-205ENST00000359984 SLC25A34Q6PIV7 304 aa13.59□□□□□ -0.23
CLN3-205ENST00000359984 MUC7Q8TAX7 377 aa13.59□□□□□ -0.23
CLN3-205ENST00000359984 WWC2-AS2Q96NR7 200 aa13.59□□□□□ -0.23
CLN3-205ENST00000359984 CST9LQ9H4G1 147 aa13.59□□□□□ -0.23
CLN3-205ENST00000359984 TRAV12-1A0A0B4J245 112 aa13.59□□□□□ -0.23
CLN3-205ENST00000359984 COX8AP10176 69 aa13.59□□□□□ -0.23
CLN3-205ENST00000359984 A0A087WX48 190 aa13.58□□□□□ -0.24
CLN3-205ENST00000359984 STPG4Q8N801 248 aa13.58□□□□□ -0.24
CLN3-205ENST00000359984 TMEM238LA0A1B0GVL6 79 aa13.56□□□□□ -0.24
CLN3-205ENST00000359984 TCTAP57738 103 aa13.56□□□□□ -0.24
CLN3-205ENST00000359984 MRPL35Q9NZE8 188 aaKnown RBP13.55□□□□□ -0.24
CLN3-205ENST00000359984 CHTOPQ9Y3Y2 248 aaKnown RBP13.55□□□□□ -0.24
CLN3-205ENST00000359984 IGKCP01834 107 aa13.55□□□□□ -0.24
CLN3-205ENST00000359984 DPM2O94777 84 aa13.54□□□□□ -0.24
CLN3-205ENST00000359984 IGHV3-30P01768 117 aa13.54□□□□□ -0.24
CLN3-205ENST00000359984 IGHV3-33P01772 117 aa13.54□□□□□ -0.24
CLN3-205ENST00000359984 IGHV3-30-3P0DP02 117 aa13.54□□□□□ -0.24
CLN3-205ENST00000359984 IGHV3-30-5P0DP03 117 aa13.54□□□□□ -0.24
CLN3-205ENST00000359984 STARD9Q9P2P6 4700 aa13.53□□□□□ -0.24
CLN3-205ENST00000359984 F8VRH5 84 aa13.53□□□□□ -0.24
CLN3-205ENST00000359984 C2orf91Q6ZV80 131 aa13.53□□□□□ -0.24
CLN3-205ENST00000359984 BOD1L2Q8IYS8 172 aa13.53□□□□□ -0.24
CLN3-205ENST00000359984 ANGP03950 147 aaKnown RBP13.52□□□□□ -0.25
CLN3-205ENST00000359984 UPK3BQ9BT76 320 aa13.52□□□□□ -0.25
CLN3-205ENST00000359984 PLECQ15149 4684 aaKnown RBP13.51□□□□□ -0.25
CLN3-205ENST00000359984 IGLV4-69A0A075B6H9 119 aa13.51□□□□□ -0.25
CLN3-205ENST00000359984 UBE2D1P51668 147 aa13.51□□□□□ -0.25
CLN3-205ENST00000359984 BATFQ16520 125 aa13.51□□□□□ -0.25
CLN3-205ENST00000359984 TENM2Q9NT68 2774 aa13.51□□□□□ -0.25
CLN3-205ENST00000359984 DLEU1O43261 78 aa13.5□□□□□ -0.25
CLN3-205ENST00000359984 LINC01556Q5JQF7 62 aa13.5□□□□□ -0.25
CLN3-205ENST00000359984 LINC00269Q8N2A0 174 aa13.5□□□□□ -0.25
CLN3-205ENST00000359984 TRAV13-1A0A0B4J241 112 aa13.5□□□□□ -0.25
CLN3-205ENST00000359984 IGKV3OR2-268A0A0C4DH90 116 aa13.5□□□□□ -0.25
CLN3-205ENST00000359984 A0A0J9YXV3 536 aa13.5□□□□□ -0.25
CLN3-205ENST00000359984 DNAH10OSP0CZ25 163 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms