RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 IGLV9-49A0A0B4J1Y8 123 aa13.62□□□□□ -0.23
SHANK1-202ENST00000359082 UBE2D4Q9Y2X8 147 aa13.62□□□□□ -0.23
SHANK1-202ENST00000359082 CREBBPQ92793 2442 aa13.62□□□□□ -0.23
SHANK1-202ENST00000359082 TRBV6-5A0A0K0K1A5 114 aa13.62□□□□□ -0.23
SHANK1-202ENST00000359082 TRBV30A0A0K0K1B3 111 aa13.62□□□□□ -0.23
SHANK1-202ENST00000359082 TRAV10A0A0B4J240 114 aa13.61□□□□□ -0.23
SHANK1-202ENST00000359082 IGHV4-30-4P0DP06 118 aa13.61□□□□□ -0.23
SHANK1-202ENST00000359082 C18orf65Q6ZTR6 163 aa13.61□□□□□ -0.23
SHANK1-202ENST00000359082 MRPS12O15235 138 aaKnown RBP13.61□□□□□ -0.23
SHANK1-202ENST00000359082 ZNF295-AS1Q8N0V1 137 aa13.61□□□□□ -0.23
SHANK1-202ENST00000359082 GTF3C1Q12789 2109 aa13.61□□□□□ -0.23
SHANK1-202ENST00000359082 MBD6Q96DN6 1003 aa13.61□□□□□ -0.23
SHANK1-202ENST00000359082 U3KQK5 164 aa13.61□□□□□ -0.23
SHANK1-202ENST00000359082 WFDC10AQ9H1F0 79 aa13.61□□□□□ -0.23
SHANK1-202ENST00000359082 ZGRF1Q86YA3 2104 aa13.6□□□□□ -0.23
SHANK1-202ENST00000359082 CLUHP3Q96NS8 147 aa13.6□□□□□ -0.23
SHANK1-202ENST00000359082 KIAA1549LQ6ZVL6 1849 aa13.6□□□□□ -0.23
SHANK1-202ENST00000359082 LY6G6DO95868 133 aa13.6□□□□□ -0.23
SHANK1-202ENST00000359082 EIF4EBP1Q13541 118 aaPredicted RBP13.6□□□□□ -0.23
SHANK1-202ENST00000359082 SHISA2Q6UWI4 295 aa13.59□□□□□ -0.23
SHANK1-202ENST00000359082 C9orf85Q96MD7 179 aa13.59□□□□□ -0.23
SHANK1-202ENST00000359082 MED13Q9UHV7 2174 aa13.59□□□□□ -0.23
SHANK1-202ENST00000359082 V9GYY9 64 aa13.59□□□□□ -0.23
SHANK1-202ENST00000359082 FAM30AQ9NZY2 134 aa13.59□□□□□ -0.23
SHANK1-202ENST00000359082 TSHBP01222 138 aa13.58□□□□□ -0.23
SHANK1-202ENST00000359082 RBX1P62877 108 aa13.58□□□□□ -0.24
SHANK1-202ENST00000359082 UBE2D3P61077 147 aa13.58□□□□□ -0.24
SHANK1-202ENST00000359082 PRR4Q16378 134 aa13.58□□□□□ -0.24
SHANK1-202ENST00000359082 ZNF706Q9Y5V0 76 aaPredicted RBP13.58□□□□□ -0.24
SHANK1-202ENST00000359082 CACNA1HO95180 2353 aa13.58□□□□□ -0.24
SHANK1-202ENST00000359082 PCNX2A6NKB5 2137 aa13.58□□□□□ -0.24
SHANK1-202ENST00000359082 PRM2P04554 102 aa13.58□□□□□ -0.24
SHANK1-202ENST00000359082 ARHGAP21Q5T5U3 1957 aa13.58□□□□□ -0.24
SHANK1-202ENST00000359082 ZNF702PQ9H963 129 aa13.58□□□□□ -0.24
SHANK1-202ENST00000359082 M0R378 163 aa13.57□□□□□ -0.24
SHANK1-202ENST00000359082 LY6G6CO95867 125 aa13.56□□□□□ -0.24
SHANK1-202ENST00000359082 KPRPQ5T749 579 aaPredicted RBP13.56□□□□□ -0.24
SHANK1-202ENST00000359082 DHRS4-AS1Q9P1J3 65 aa13.56□□□□□ -0.24
SHANK1-202ENST00000359082 Q6ZQY7 126 aa13.56□□□□□ -0.24
SHANK1-202ENST00000359082 CD164L2Q6UWJ8 174 aa13.55□□□□□ -0.24
SHANK1-202ENST00000359082 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.55□□□□□ -0.24
SHANK1-202ENST00000359082 NDUFA7O95182 113 aa13.55□□□□□ -0.24
SHANK1-202ENST00000359082 PLAC8L1A1L4L8 177 aa13.55□□□□□ -0.24
SHANK1-202ENST00000359082 SMIM11BQ8TCY0 68 aa13.55□□□□□ -0.24
SHANK1-202ENST00000359082 LINC00959A0A1B0GUT2 108 aa13.54□□□□□ -0.24
SHANK1-202ENST00000359082 IGLV4-69A0A075B6H9 119 aa13.54□□□□□ -0.24
SHANK1-202ENST00000359082 PRR9Q5T870 116 aa13.54□□□□□ -0.24
SHANK1-202ENST00000359082 PRO3102Q9H379 93 aa13.54□□□□□ -0.24
SHANK1-202ENST00000359082 LOC107984640A0A0U1RRK4 108 aa13.54□□□□□ -0.24
SHANK1-202ENST00000359082 NUP210LQ5VU65 1888 aa13.53□□□□□ -0.24
SHANK1-202ENST00000359082 CRIP3Q6Q6R5 217 aa13.53□□□□□ -0.24
SHANK1-202ENST00000359082 C11orf71Q6IPW1 123 aa13.53□□□□□ -0.24
SHANK1-202ENST00000359082 SERP1Q9Y6X1 66 aa13.52□□□□□ -0.24
SHANK1-202ENST00000359082 ATP5EP56381 51 aaPredicted RBP13.52□□□□□ -0.24
SHANK1-202ENST00000359082 IGLV2-11P01706 119 aa13.52□□□□□ -0.25
SHANK1-202ENST00000359082 EBI3Q14213 229 aa13.52□□□□□ -0.25
SHANK1-202ENST00000359082 RNASE3P12724 160 aaKnown RBP13.52□□□□□ -0.25
SHANK1-202ENST00000359082 SERP2Q8N6R1 65 aa13.52□□□□□ -0.25
SHANK1-202ENST00000359082 ZNF843Q8N446 348 aa13.52□□□□□ -0.25
SHANK1-202ENST00000359082 PYGO1Q9Y3Y4 419 aa13.52□□□□□ -0.25
SHANK1-202ENST00000359082 COL4A4P53420 1690 aaPredicted RBP13.52□□□□□ -0.25
SHANK1-202ENST00000359082 A6NED7 52 aa13.51□□□□□ -0.25
SHANK1-202ENST00000359082 TRBV27A0A0K0K1C4 114 aa13.51□□□□□ -0.25
SHANK1-202ENST00000359082 NRACQ8N912 160 aa13.51□□□□□ -0.25
SHANK1-202ENST00000359082 PSMG3-AS1Q96PY0 264 aa13.51□□□□□ -0.25
SHANK1-202ENST00000359082 NANOS2P60321 138 aaKnown RBP13.51□□□□□ -0.25
SHANK1-202ENST00000359082 LELP1Q5T871 98 aa13.5□□□□□ -0.25
SHANK1-202ENST00000359082 NDUFC1O43677 76 aa13.5□□□□□ -0.25
SHANK1-202ENST00000359082 YPEL4Q96NS1 127 aa13.5□□□□□ -0.25
SHANK1-202ENST00000359082 FAM19A3Q7Z5A8 133 aa13.5□□□□□ -0.25
SHANK1-202ENST00000359082 IMUPQ9GZP8 106 aa13.49□□□□□ -0.25
SHANK1-202ENST00000359082 TIMM17BO60830 172 aa13.49□□□□□ -0.25
SHANK1-202ENST00000359082 UBE2D2P62837 147 aa13.48□□□□□ -0.25
SHANK1-202ENST00000359082 Q6ZS46 218 aa13.48□□□□□ -0.25
SHANK1-202ENST00000359082 Q8N9L7 120 aa13.48□□□□□ -0.25
SHANK1-202ENST00000359082 CCDC179H3BU77 68 aa13.48□□□□□ -0.25
SHANK1-202ENST00000359082 RETNQ9HD89 108 aa13.48□□□□□ -0.25
SHANK1-202ENST00000359082 PLCE1Q9P212 2302 aa13.47□□□□□ -0.25
SHANK1-202ENST00000359082 FSTL3O95633 263 aa13.47□□□□□ -0.25
SHANK1-202ENST00000359082 C11orf21Q9P2W6 132 aa13.47□□□□□ -0.25
SHANK1-202ENST00000359082 LINC01006Q8NI28 216 aa13.46□□□□□ -0.25
SHANK1-202ENST00000359082 NBASA2RRP1 2371 aa13.46□□□□□ -0.25
SHANK1-202ENST00000359082 ZNF73O43830 326 aaPredicted RBP13.46□□□□□ -0.25
SHANK1-202ENST00000359082 PCNX1Q96RV3 2341 aa13.46□□□□□ -0.26
SHANK1-202ENST00000359082 TECTAO75443 2155 aa13.45□□□□□ -0.26
SHANK1-202ENST00000359082 DSCAML1Q8TD84 2053 aa13.45□□□□□ -0.26
SHANK1-202ENST00000359082 LST1O00453 97 aa13.45□□□□□ -0.26
SHANK1-202ENST00000359082 C2orf91Q6ZV80 131 aa13.45□□□□□ -0.26
SHANK1-202ENST00000359082 POM121L12Q8N7R1 296 aa13.45□□□□□ -0.26
SHANK1-202ENST00000359082 GAS8-AS1O95177 125 aa13.44□□□□□ -0.26
SHANK1-202ENST00000359082 COX7CP15954 63 aa13.44□□□□□ -0.26
SHANK1-202ENST00000359082 COX17Q14061 63 aa13.44□□□□□ -0.26
SHANK1-202ENST00000359082 C10orf25Q5T742 122 aa13.43□□□□□ -0.26
SHANK1-202ENST00000359082 MRPS36P82909 103 aaKnown RBP13.42□□□□□ -0.26
SHANK1-202ENST00000359082 XGP55808 180 aa13.42□□□□□ -0.26
SHANK1-202ENST00000359082 MED13LQ71F56 2210 aa13.41□□□□□ -0.26
SHANK1-202ENST00000359082 ALPK3Q96L96 1907 aa13.41□□□□□ -0.26
SHANK1-202ENST00000359082 RETNLBQ9BQ08 111 aa13.41□□□□□ -0.26
SHANK1-202ENST00000359082 EDN2P20800 178 aa13.41□□□□□ -0.26
SHANK1-202ENST00000359082 CELA1Q9UNI1 258 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms