RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 SPATA45Q537H7 98 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 PSMG4Q5JS54 123 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 SPANXN1Q5VSR9 72 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 MRAP2Q96G30 205 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 TMEM208Q9BTX3 173 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 TMEM70Q9BUB7 260 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 SMIM2Q9BVW6 85 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 A0A1B0GUV1 79 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 H3BVH4 76 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 ORMDL3Q8N138 153 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 C14orf178Q8N769 122 aaPredicted RBP1.59□□□□□ -2.15
VPS54-202ENST00000354504 OR11H1Q8NG94 326 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 PRELID3AQ96N28 172 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 C20orf78Q9BR46 151 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 ST20Q9HBF5 79 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 TGP01266 2768 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 A0A087WX48 190 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 A0A0G2JLM5 398 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 C20orf202A1L168 122 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 K7EMI3 77 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 CKS2P33552 79 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 EMP1P54849 157 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 RPS20P60866 119 aaKnown RBP1.59□□□□□ -2.16
VPS54-202ENST00000354504 RPL39P62891 51 aaKnown RBP1.59□□□□□ -2.16
VPS54-202ENST00000354504 MPV17L2Q567V2 206 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 Q8NDZ9 215 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 TMEM158Q8WZ71 300 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 HIGD1BQ9P298 99 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 UBE2D4Q9Y2X8 147 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 PYGO1Q9Y3Y4 419 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 LPAP08519 4548 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 IGHV3-73A0A0B4J1V6 119 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 TRAV12-3A0A0B4J271 114 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 KNCNA6PVL3 124 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 TCAPO15273 167 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 SIVA1O15304 175 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 DUSP14O95147 198 aaKnown RBP1.58□□□□□ -2.16
VPS54-202ENST00000354504 MGPP08493 103 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 UBE2D1P51668 147 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 CACNG7P62955 275 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 EGFEM1PQ0D2K5 195 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 SPINK13Q1W4C9 94 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 ERASQ7Z444 233 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 KLHL30-AS1Q8NEE0 82 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 WFDC9Q8NEX5 89 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 OR10J6PQ8NGY7 276 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 PLEKHB2Q96CS7 222 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 IGLV4-3A0A075B6K6 122 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 TRAV8-6A0A0B4J262 113 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 LOC100131303A0A0U1RQF7 123 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 TSTD3H0UI37 97 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 HBDP02042 147 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 MT3P25713 68 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 BMI1P35226 326 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 CDKN1BP46527 198 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 MRPS36P82909 103 aaKnown RBP1.58□□□□□ -2.16
VPS54-202ENST00000354504 DEFA6Q01524 100 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 COX6A2Q02221 97 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 KRTAP24-1Q3LI83 254 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 DYNLRB2Q8TF09 96 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 OPRPNQ99935 248 aaPredicted RBP1.58□□□□□ -2.16
VPS54-202ENST00000354504 C1QTNF4Q9BXJ3 329 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 ZMAT5Q9UDW3 170 aaKnown RBP1.58□□□□□ -2.16
VPS54-202ENST00000354504 PHLDA3Q9Y5J5 127 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 LRP1Q07954 4544 aaKnown RBP1.58□□□□□ -2.16
VPS54-202ENST00000354504 A0A087X002 238 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 TRAV25A0A0B4J276 109 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 TRAV21A0A0B4J279 112 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 TMEM223A0PJW6 202 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 PPBPP02775 128 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 PRSS1P07477 247 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 DEFB131AP59861 70 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 RBX1P62877 108 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 DAZ2Q13117 558 aaKnown RBP1.58□□□□□ -2.16
VPS54-202ENST00000354504 SRSF9Q13242 221 aaKnown RBP eCLIP1.58□□□□□ -2.16
VPS54-202ENST00000354504 RIGQ13278 110 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 FAM159AQ6UWV7 190 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 Q6ZRP5 223 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 FA2HQ7L5A8 372 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 SMIM15Q7Z3B0 74 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 NEGR1Q7Z3B1 354 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 C10orf126Q8N4M7 172 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 Q8NAQ8 132 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 OR1N2Q8NGR9 330 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 C11orf45Q8TAV5 145 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 TIMM17AQ99595 171 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 MRPL35Q9NZE8 188 aaKnown RBP1.58□□□□□ -2.16
VPS54-202ENST00000354504 A0A0U1RRA0 63 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 C11orf86A6NJI1 115 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 LEPROTL1O95214 131 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 IGHV3-53P01767 116 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 IGKV2-30P06310 120 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 SMIM17P0DL12 118 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 S100A7P31151 101 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 FXYD2P54710 66 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 SNRPD3P62318 126 aaKnown RBP1.57□□□□□ -2.16
VPS54-202ENST00000354504 STHQ8IWL8 128 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 PPDPFQ9H3Y8 114 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 CST9LQ9H4G1 147 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 DPH3P1Q9H4G8 78 aa1.57□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms