RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 SPACA4Q8TDM5 124 aa11.29□□□□□ -0.6
HDDC3-201ENST00000330334 CDC42SE2Q9NRR3 84 aa11.29□□□□□ -0.6
HDDC3-201ENST00000330334 TMEM242Q9NWH2 141 aa11.29□□□□□ -0.6
HDDC3-201ENST00000330334 A0A087WYN8 130 aa11.28□□□□□ -0.6
HDDC3-201ENST00000330334 LINC00959A0A1B0GUT2 108 aa11.28□□□□□ -0.6
HDDC3-201ENST00000330334 A0A1B0GVG6 124 aa11.28□□□□□ -0.6
HDDC3-201ENST00000330334 DPH3Q96FX2 82 aa11.28□□□□□ -0.6
HDDC3-201ENST00000330334 C7orf77A4D0Y5 90 aa11.27□□□□□ -0.61
HDDC3-201ENST00000330334 PLAC8Q9NZF1 115 aa11.27□□□□□ -0.61
HDDC3-201ENST00000330334 NAT8Q9UHE5 227 aa11.27□□□□□ -0.61
HDDC3-201ENST00000330334 CSDC2Q9Y534 153 aaKnown RBP11.27□□□□□ -0.61
HDDC3-201ENST00000330334 PKHD1L1Q86WI1 4243 aa11.26□□□□□ -0.61
HDDC3-201ENST00000330334 SMIM27A0A1W2PRY6 76 aa11.26□□□□□ -0.61
HDDC3-201ENST00000330334 C9JQL5 133 aa11.26□□□□□ -0.61
HDDC3-201ENST00000330334 XCL1P47992 114 aa11.26□□□□□ -0.61
HDDC3-201ENST00000330334 SUMO2P61956 95 aaKnown RBP11.26□□□□□ -0.61
HDDC3-201ENST00000330334 PEA15Q15121 130 aa11.26□□□□□ -0.61
HDDC3-201ENST00000330334 HIGD2BQ4VC39 106 aa11.26□□□□□ -0.61
HDDC3-201ENST00000330334 ZNF664Q8N3J9 261 aa11.26□□□□□ -0.61
HDDC3-201ENST00000330334 NRACQ8N912 160 aa11.26□□□□□ -0.61
HDDC3-201ENST00000330334 A0A1B0GW15 77 aa11.25□□□□□ -0.61
HDDC3-201ENST00000330334 PPP1R2P9O14990 202 aa11.25□□□□□ -0.61
HDDC3-201ENST00000330334 CCL25O15444 150 aa11.25□□□□□ -0.61
HDDC3-201ENST00000330334 CHTF8P0CG12 524 aa11.25□□□□□ -0.61
HDDC3-201ENST00000330334 COX6A2Q02221 97 aa11.25□□□□□ -0.61
HDDC3-201ENST00000330334 SMAGPQ0VAQ4 97 aa11.25□□□□□ -0.61
HDDC3-201ENST00000330334 SS18Q15532 418 aa11.25□□□□□ -0.61
HDDC3-201ENST00000330334 SERTAD4-AS1Q5TG53 156 aa11.25□□□□□ -0.61
HDDC3-201ENST00000330334 FAM104BQ5XKR9 115 aa11.25□□□□□ -0.61
HDDC3-201ENST00000330334 CD164L2Q6UWJ8 174 aa11.25□□□□□ -0.61
HDDC3-201ENST00000330334 IGHV1-58A0A0C4DH39 117 aa11.24□□□□□ -0.61
HDDC3-201ENST00000330334 LINC00862A6NCI5 91 aa11.24□□□□□ -0.61
HDDC3-201ENST00000330334 HNRNPA3P51991 378 aaKnown RBP11.24□□□□□ -0.61
HDDC3-201ENST00000330334 ADIRFQ15847 76 aa11.24□□□□□ -0.61
HDDC3-201ENST00000330334 KIR2DL4Q99706 377 aa11.24□□□□□ -0.61
HDDC3-201ENST00000330334 TRBV24-1A0A075B6N3 115 aa11.23□□□□□ -0.61
HDDC3-201ENST00000330334 SMKR1H3BMG3 65 aa11.23□□□□□ -0.61
HDDC3-201ENST00000330334 FCER1GP30273 86 aa11.23□□□□□ -0.61
HDDC3-201ENST00000330334 PRSS3P2Q8NHM4 247 aa11.23□□□□□ -0.61
HDDC3-201ENST00000330334 C20orf78Q9BR46 151 aa11.23□□□□□ -0.61
HDDC3-201ENST00000330334 PKIGQ9Y2B9 76 aa11.23□□□□□ -0.61
HDDC3-201ENST00000330334 RPL32P62910 135 aaKnown RBP11.22□□□□□ -0.61
HDDC3-201ENST00000330334 SRSF3P84103 164 aaKnown RBP11.22□□□□□ -0.61
HDDC3-201ENST00000330334 MRPL51Q4U2R6 128 aaKnown RBP11.22□□□□□ -0.61
HDDC3-201ENST00000330334 Q6ZRU5 148 aa11.22□□□□□ -0.61
HDDC3-201ENST00000330334 LINC00474Q9P2X8 69 aa11.22□□□□□ -0.61
HDDC3-201ENST00000330334 C1orf196B1AJZ1 125 aa11.21□□□□□ -0.61
HDDC3-201ENST00000330334 TIMM21Q9BVV7 248 aa11.21□□□□□ -0.61
HDDC3-201ENST00000330334 UBE2D4Q9Y2X8 147 aa11.21□□□□□ -0.61
HDDC3-201ENST00000330334 TCAPO15273 167 aa11.2□□□□□ -0.62
HDDC3-201ENST00000330334 C7orf33Q8WU49 177 aa11.2□□□□□ -0.62
HDDC3-201ENST00000330334 S100A8P05109 93 aa11.19□□□□□ -0.62
HDDC3-201ENST00000330334 CAMPP49913 170 aa11.19□□□□□ -0.62
HDDC3-201ENST00000330334 MAJINQ3KP22 176 aa11.19□□□□□ -0.62
HDDC3-201ENST00000330334 TMEM18Q96B42 140 aa11.19□□□□□ -0.62
HDDC3-201ENST00000330334 ZNF561-AS1K7EIQ3 104 aa11.18□□□□□ -0.62
HDDC3-201ENST00000330334 CKS2P33552 79 aa11.18□□□□□ -0.62
HDDC3-201ENST00000330334 IGKV2-24A0A0C4DH68 120 aa11.17□□□□□ -0.62
HDDC3-201ENST00000330334 F8W036 122 aa11.17□□□□□ -0.62
HDDC3-201ENST00000330334 CARD19Q96LW7 228 aa11.17□□□□□ -0.62
HDDC3-201ENST00000330334 A0A096LNI7 61 aa11.16□□□□□ -0.62
HDDC3-201ENST00000330334 A0A1B0GXF2 115 aa11.16□□□□□ -0.62
HDDC3-201ENST00000330334 COX7A2LO14548 114 aa11.16□□□□□ -0.62
HDDC3-201ENST00000330334 PHOX2AO14813 284 aa11.16□□□□□ -0.62
HDDC3-201ENST00000330334 TNFRSF6BO95407 300 aa11.16□□□□□ -0.62
HDDC3-201ENST00000330334 HBBP68871 147 aa11.16□□□□□ -0.62
HDDC3-201ENST00000330334 SYCNQ0VAF6 134 aa11.16□□□□□ -0.62
HDDC3-201ENST00000330334 STPG4Q8N801 248 aa11.16□□□□□ -0.62
HDDC3-201ENST00000330334 HMCN2Q8NDA2 5059 aa11.15□□□□□ -0.62
HDDC3-201ENST00000330334 PPBPP02775 128 aa11.15□□□□□ -0.62
HDDC3-201ENST00000330334 LINC00526Q96FQ7 95 aa11.15□□□□□ -0.62
HDDC3-201ENST00000330334 MALP21145 153 aa11.14□□□□□ -0.63
HDDC3-201ENST00000330334 TRAV13-1A0A0B4J241 112 aa11.13□□□□□ -0.63
HDDC3-201ENST00000330334 ATP5L2Q7Z4Y8 100 aa11.13□□□□□ -0.63
HDDC3-201ENST00000330334 SMIM2Q9BVW6 85 aa11.13□□□□□ -0.63
HDDC3-201ENST00000330334 D6R8Y8 96 aa11.12□□□□□ -0.63
HDDC3-201ENST00000330334 MT1HL1P0DM35 61 aa11.12□□□□□ -0.63
HDDC3-201ENST00000330334 MRPL54Q6P161 138 aaKnown RBP11.12□□□□□ -0.63
HDDC3-201ENST00000330334 Q6ZUT4 128 aa11.12□□□□□ -0.63
HDDC3-201ENST00000330334 C2orf48Q96LS8 159 aa11.12□□□□□ -0.63
HDDC3-201ENST00000330334 SPANXA1Q9NS26 97 aa11.12□□□□□ -0.63
HDDC3-201ENST00000330334 IGLV4-69A0A075B6H9 119 aa11.11□□□□□ -0.63
HDDC3-201ENST00000330334 APOMO95445 188 aa11.11□□□□□ -0.63
HDDC3-201ENST00000330334 MRPS36P82909 103 aaKnown RBP11.11□□□□□ -0.63
HDDC3-201ENST00000330334 RNASE13Q5GAN3 156 aaKnown RBP11.11□□□□□ -0.63
HDDC3-201ENST00000330334 FAM104AQ969W3 186 aa11.11□□□□□ -0.63
HDDC3-201ENST00000330334 NPYP01303 97 aa11.1□□□□□ -0.63
HDDC3-201ENST00000330334 PTTG1IPP53801 180 aa11.1□□□□□ -0.63
HDDC3-201ENST00000330334 PRR3P79522 188 aaKnown RBP11.1□□□□□ -0.63
HDDC3-201ENST00000330334 LOC107984640A0A0U1RRK4 108 aa11.09□□□□□ -0.63
HDDC3-201ENST00000330334 RPL39P62891 51 aaKnown RBP11.09□□□□□ -0.63
HDDC3-201ENST00000330334 ORMDL3Q8N138 153 aa11.09□□□□□ -0.63
HDDC3-201ENST00000330334 PRSS47A8MTI9 375 aa11.08□□□□□ -0.64
HDDC3-201ENST00000330334 F8WDY8 70 aa11.08□□□□□ -0.64
HDDC3-201ENST00000330334 PNRC1Q12796 327 aaPredicted RBP11.08□□□□□ -0.64
HDDC3-201ENST00000330334 TMEM136Q6ZRR5 245 aa11.08□□□□□ -0.64
HDDC3-201ENST00000330334 C5orf38Q86SI9 138 aa11.08□□□□□ -0.64
HDDC3-201ENST00000330334 CAMK2N2Q96S95 79 aa11.08□□□□□ -0.64
HDDC3-201ENST00000330334 IGHV3OR16-9A0A0B4J2B5 98 aa11.07□□□□□ -0.64
HDDC3-201ENST00000330334 RNF151Q2KHN1 245 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms