RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 A0A1B0GXF2 115 aa9.26□□□□□ -0.93
HMGN3-201ENST00000275036 SUMO2P61956 95 aaKnown RBP9.26□□□□□ -0.93
HMGN3-201ENST00000275036 MRPL54Q6P161 138 aaKnown RBP9.26□□□□□ -0.93
HMGN3-201ENST00000275036 OR5A1Q8NGJ0 315 aa9.26□□□□□ -0.93
HMGN3-201ENST00000275036 C7orf77A4D0Y5 90 aa9.25□□□□□ -0.93
HMGN3-201ENST00000275036 VCYO14598 125 aa9.25□□□□□ -0.93
HMGN3-201ENST00000275036 FOXI1Q12951 378 aa9.25□□□□□ -0.93
HMGN3-201ENST00000275036 MRPL52Q86TS9 123 aaKnown RBP9.25□□□□□ -0.93
HMGN3-201ENST00000275036 BTF3L4Q96K17 158 aa9.25□□□□□ -0.93
HMGN3-201ENST00000275036 CDC42SE2Q9NRR3 84 aa9.25□□□□□ -0.93
HMGN3-201ENST00000275036 LINC00959A0A1B0GUT2 108 aa9.24□□□□□ -0.93
HMGN3-201ENST00000275036 A0A1B0GW15 77 aa9.24□□□□□ -0.93
HMGN3-201ENST00000275036 TMEM101Q96IK0 257 aa9.24□□□□□ -0.93
HMGN3-201ENST00000275036 TRBV24-1A0A075B6N3 115 aa9.23□□□□□ -0.93
HMGN3-201ENST00000275036 LINC00862A6NCI5 91 aa9.23□□□□□ -0.93
HMGN3-201ENST00000275036 LCE2BO14633 110 aa9.23□□□□□ -0.93
HMGN3-201ENST00000275036 PPP1R17O96001 155 aa9.23□□□□□ -0.93
HMGN3-201ENST00000275036 FCER1GP30273 86 aa9.23□□□□□ -0.93
HMGN3-201ENST00000275036 HBBP68871 147 aa9.23□□□□□ -0.93
HMGN3-201ENST00000275036 HIGD2BQ4VC39 106 aa9.23□□□□□ -0.93
HMGN3-201ENST00000275036 AP5S1Q9NUS5 200 aa9.23□□□□□ -0.93
HMGN3-201ENST00000275036 D6R8Y8 96 aa9.22□□□□□ -0.93
HMGN3-201ENST00000275036 PPP1R2P9O14990 202 aa9.22□□□□□ -0.93
HMGN3-201ENST00000275036 CCL25O15444 150 aa9.22□□□□□ -0.93
HMGN3-201ENST00000275036 CKS2P33552 79 aa9.22□□□□□ -0.93
HMGN3-201ENST00000275036 XCL1P47992 114 aa9.22□□□□□ -0.93
HMGN3-201ENST00000275036 ZNF664Q8N3J9 261 aa9.22□□□□□ -0.93
HMGN3-201ENST00000275036 UBE2D4Q9Y2X8 147 aa9.22□□□□□ -0.93
HMGN3-201ENST00000275036 TNFRSF6BO95407 300 aa9.21□□□□□ -0.94
HMGN3-201ENST00000275036 NPYP01303 97 aa9.21□□□□□ -0.94
HMGN3-201ENST00000275036 RAB14P61106 215 aa9.21□□□□□ -0.94
HMGN3-201ENST00000275036 CIRBPQ14011 172 aaKnown RBP9.21□□□□□ -0.94
HMGN3-201ENST00000275036 CFAP161Q6P656 301 aa9.21□□□□□ -0.94
HMGN3-201ENST00000275036 KIR2DL4Q99706 377 aa9.21□□□□□ -0.94
HMGN3-201ENST00000275036 C20orf78Q9BR46 151 aa9.21□□□□□ -0.94
HMGN3-201ENST00000275036 HMCN2Q8NDA2 5059 aa9.21□□□□□ -0.94
HMGN3-201ENST00000275036 IGHV3-64A0A075B6Q5 118 aa9.2□□□□□ -0.94
HMGN3-201ENST00000275036 GVQW2A0A096LPI5 108 aaPredicted RBP9.2□□□□□ -0.94
HMGN3-201ENST00000275036 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.2□□□□□ -0.94
HMGN3-201ENST00000275036 CHTF8P0CG12 524 aa9.2□□□□□ -0.94
HMGN3-201ENST00000275036 RPL32P62910 135 aaKnown RBP9.2□□□□□ -0.94
HMGN3-201ENST00000275036 RNASE13Q5GAN3 156 aaKnown RBP9.2□□□□□ -0.94
HMGN3-201ENST00000275036 KRTAP29-1A8MX34 341 aaPredicted RBP9.19□□□□□ -0.94
HMGN3-201ENST00000275036 F8W036 122 aa9.19□□□□□ -0.94
HMGN3-201ENST00000275036 S100A8P05109 93 aa9.19□□□□□ -0.94
HMGN3-201ENST00000275036 HNRNPA3P51991 378 aaKnown RBP9.19□□□□□ -0.94
HMGN3-201ENST00000275036 IFITM2Q01629 132 aa9.19□□□□□ -0.94
HMGN3-201ENST00000275036 CLLU1Q5K131 121 aa9.19□□□□□ -0.94
HMGN3-201ENST00000275036 FAM104AQ969W3 186 aa9.19□□□□□ -0.94
HMGN3-201ENST00000275036 SMIM2Q9BVW6 85 aa9.19□□□□□ -0.94
HMGN3-201ENST00000275036 CSDC2Q9Y534 153 aaKnown RBP9.19□□□□□ -0.94
HMGN3-201ENST00000275036 RPL39P62891 51 aaKnown RBP9.18□□□□□ -0.94
HMGN3-201ENST00000275036 PNRC1Q12796 327 aaPredicted RBP9.18□□□□□ -0.94
HMGN3-201ENST00000275036 SS18Q15532 418 aa9.18□□□□□ -0.94
HMGN3-201ENST00000275036 Q6ZUT4 128 aa9.18□□□□□ -0.94
HMGN3-201ENST00000275036 ATP5L2Q7Z4Y8 100 aa9.18□□□□□ -0.94
HMGN3-201ENST00000275036 LINC00526Q96FQ7 95 aa9.18□□□□□ -0.94
HMGN3-201ENST00000275036 J3QL48 77 aa9.17□□□□□ -0.94
HMGN3-201ENST00000275036 CD164L2Q6UWJ8 174 aa9.17□□□□□ -0.94
HMGN3-201ENST00000275036 PRSS3P2Q8NHM4 247 aa9.17□□□□□ -0.94
HMGN3-201ENST00000275036 SPACA4Q8TDM5 124 aa9.17□□□□□ -0.94
HMGN3-201ENST00000275036 IGHV1-58A0A0C4DH39 117 aa9.16□□□□□ -0.94
HMGN3-201ENST00000275036 PPBPP02775 128 aa9.16□□□□□ -0.94
HMGN3-201ENST00000275036 ADCYAP1P18509 176 aa9.16□□□□□ -0.94
HMGN3-201ENST00000275036 COX6A2Q02221 97 aa9.16□□□□□ -0.94
HMGN3-201ENST00000275036 ANAPC16Q96DE5 110 aa9.16□□□□□ -0.94
HMGN3-201ENST00000275036 TIMM21Q9BVV7 248 aa9.16□□□□□ -0.94
HMGN3-201ENST00000275036 A0A087WYN8 130 aa9.15□□□□□ -0.94
HMGN3-201ENST00000275036 PHOX2AO14813 284 aa9.15□□□□□ -0.94
HMGN3-201ENST00000275036 TCAPO15273 167 aa9.15□□□□□ -0.94
HMGN3-201ENST00000275036 MT-ND4LP03901 98 aa9.15□□□□□ -0.94
HMGN3-201ENST00000275036 RPL37AP61513 92 aaKnown RBP9.15□□□□□ -0.94
HMGN3-201ENST00000275036 TMEM136Q6ZRR5 245 aa9.15□□□□□ -0.94
HMGN3-201ENST00000275036 ORMDL3Q8N138 153 aa9.15□□□□□ -0.94
HMGN3-201ENST00000275036 TRAV13-1A0A0B4J241 112 aa9.14□□□□□ -0.95
HMGN3-201ENST00000275036 C1orf196B1AJZ1 125 aa9.14□□□□□ -0.95
HMGN3-201ENST00000275036 SMAGPQ0VAQ4 97 aa9.14□□□□□ -0.95
HMGN3-201ENST00000275036 TMEM18Q96B42 140 aa9.14□□□□□ -0.95
HMGN3-201ENST00000275036 PRELID3AQ96N28 172 aa9.14□□□□□ -0.95
HMGN3-201ENST00000275036 OPRPNQ99935 248 aaPredicted RBP9.14□□□□□ -0.95
HMGN3-201ENST00000275036 A0A096LNI7 61 aa9.12□□□□□ -0.95
HMGN3-201ENST00000275036 IGKV2-24A0A0C4DH68 120 aa9.12□□□□□ -0.95
HMGN3-201ENST00000275036 DPH3Q96FX2 82 aa9.12□□□□□ -0.95
HMGN3-201ENST00000275036 PLAC8Q9NZF1 115 aa9.12□□□□□ -0.95
HMGN3-201ENST00000275036 PRSS47A8MTI9 375 aa9.11□□□□□ -0.95
HMGN3-201ENST00000275036 COX7A2LO14548 114 aa9.11□□□□□ -0.95
HMGN3-201ENST00000275036 C5orf38Q86SI9 138 aa9.11□□□□□ -0.95
HMGN3-201ENST00000275036 CARD19Q96LW7 228 aa9.11□□□□□ -0.95
HMGN3-201ENST00000275036 SPANXA1Q9NS26 97 aa9.11□□□□□ -0.95
HMGN3-201ENST00000275036 IGLV4-69A0A075B6H9 119 aa9.1□□□□□ -0.95
HMGN3-201ENST00000275036 LOC389332A0A1B0GUA5 103 aa9.1□□□□□ -0.95
HMGN3-201ENST00000275036 TMEM218A2RU14 115 aa9.1□□□□□ -0.95
HMGN3-201ENST00000275036 ZNF561-AS1K7EIQ3 104 aa9.1□□□□□ -0.95
HMGN3-201ENST00000275036 MALP21145 153 aa9.1□□□□□ -0.95
HMGN3-201ENST00000275036 MRPS36P82909 103 aaKnown RBP9.1□□□□□ -0.95
HMGN3-201ENST00000275036 MAJINQ3KP22 176 aa9.1□□□□□ -0.95
HMGN3-201ENST00000275036 UQCC3Q6UW78 93 aa9.1□□□□□ -0.95
HMGN3-201ENST00000275036 SYCNQ0VAF6 134 aa9.09□□□□□ -0.95
HMGN3-201ENST00000275036 Q6ZRU5 148 aa9.09□□□□□ -0.95
HMGN3-201ENST00000275036 LAMTOR2Q9Y2Q5 125 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms