RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 FAM104AQ969W3 186 aa12.01□□□□□ -0.49
VPS54-201ENST00000272322 TRGV2A0A075B6R0 118 aa12.01□□□□□ -0.49
VPS54-201ENST00000272322 EIF4EBP3O60516 100 aaPredicted RBP12.01□□□□□ -0.49
VPS54-201ENST00000272322 UBE2D1P51668 147 aa12.01□□□□□ -0.49
VPS54-201ENST00000272322 RPL32P62910 135 aaKnown RBP12.01□□□□□ -0.49
VPS54-201ENST00000272322 NDUFA12Q9UI09 145 aa12.01□□□□□ -0.49
VPS54-201ENST00000272322 F8W1H4 67 aa12.01□□□□□ -0.49
VPS54-201ENST00000272322 PRO1854Q9UHT4 67 aa12.01□□□□□ -0.49
VPS54-201ENST00000272322 CHCHD7Q9BUK0 85 aa12□□□□□ -0.49
VPS54-201ENST00000272322 A0A0J9YXY3 114 aa12□□□□□ -0.49
VPS54-201ENST00000272322 TRRAPQ9Y4A5 3859 aa12□□□□□ -0.49
VPS54-201ENST00000272322 LEPROTO15243 131 aa11.99□□□□□ -0.49
VPS54-201ENST00000272322 SMCPP49901 116 aaPredicted RBP11.99□□□□□ -0.49
VPS54-201ENST00000272322 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.99□□□□□ -0.49
VPS54-201ENST00000272322 COX6A2Q02221 97 aa11.99□□□□□ -0.49
VPS54-201ENST00000272322 RNF152Q8N8N0 203 aa11.99□□□□□ -0.49
VPS54-201ENST00000272322 LINC01006Q8NI28 216 aa11.99□□□□□ -0.49
VPS54-201ENST00000272322 NFE4Q86UQ8 179 aa11.98□□□□□ -0.49
VPS54-201ENST00000272322 UBE2D4Q9Y2X8 147 aa11.98□□□□□ -0.49
VPS54-201ENST00000272322 C9JAW5 83 aa11.97□□□□□ -0.49
VPS54-201ENST00000272322 DEFB130BP0DP73 79 aa11.97□□□□□ -0.49
VPS54-201ENST00000272322 DEFB130AP0DP74 79 aa11.97□□□□□ -0.49
VPS54-201ENST00000272322 A0A096LPF7 62 aa11.96□□□□□ -0.49
VPS54-201ENST00000272322 PRO0461Q9UI25 63 aa11.96□□□□□ -0.49
VPS54-201ENST00000272322 ERG28Q9UKR5 140 aa11.96□□□□□ -0.49
VPS54-201ENST00000272322 GAGE12HA6NDE8 117 aa11.95□□□□□ -0.5
VPS54-201ENST00000272322 Q8N2B8 174 aa11.95□□□□□ -0.5
VPS54-201ENST00000272322 TOMM7Q9P0U1 55 aa11.95□□□□□ -0.5
VPS54-201ENST00000272322 DEFB4AO15263 64 aa11.94□□□□□ -0.5
VPS54-201ENST00000272322 TMEM238C9JI98 176 aa11.93□□□□□ -0.5
VPS54-201ENST00000272322 J3QR89 54 aa11.93□□□□□ -0.5
VPS54-201ENST00000272322 IGHV1-58A0A0C4DH39 117 aa11.92□□□□□ -0.5
VPS54-201ENST00000272322 MRPS36P82909 103 aaKnown RBP11.92□□□□□ -0.5
VPS54-201ENST00000272322 C11orf68Q9H3H3 251 aaKnown RBP11.92□□□□□ -0.5
VPS54-201ENST00000272322 Q9H8V8 135 aa11.92□□□□□ -0.5
VPS54-201ENST00000272322 IGHV3-33P01772 117 aa11.91□□□□□ -0.5
VPS54-201ENST00000272322 RPL36AP83881 106 aaKnown RBP11.91□□□□□ -0.5
VPS54-201ENST00000272322 GAGE6Q13070 117 aa11.91□□□□□ -0.5
VPS54-201ENST00000272322 NTM-AS1Q6ZSK4 140 aa11.91□□□□□ -0.5
VPS54-201ENST00000272322 RPL36ALQ969Q0 106 aaKnown RBP11.91□□□□□ -0.5
VPS54-201ENST00000272322 VSIG2Q96IQ7 327 aa11.91□□□□□ -0.5
VPS54-201ENST00000272322 CLEC2BQ92478 149 aa11.91□□□□□ -0.5
VPS54-201ENST00000272322 ANK3Q12955 4377 aaKnown RBP11.9□□□□□ -0.5
VPS54-201ENST00000272322 TRGV4A0A0C4DH28 118 aa11.9□□□□□ -0.5
VPS54-201ENST00000272322 HIVEP1P15822 2718 aa11.9□□□□□ -0.5
VPS54-201ENST00000272322 FOXI1Q12951 378 aa11.9□□□□□ -0.5
VPS54-201ENST00000272322 LRRC75A-AS1Q8N1F1 130 aa11.9□□□□□ -0.5
VPS54-201ENST00000272322 SIGMAR1Q99720 223 aa11.9□□□□□ -0.5
VPS54-201ENST00000272322 UBE2D3P61077 147 aa11.9□□□□□ -0.51
VPS54-201ENST00000272322 UBE2D2P62837 147 aa11.9□□□□□ -0.51
VPS54-201ENST00000272322 MEIG1Q5JSS6 88 aa11.9□□□□□ -0.51
VPS54-201ENST00000272322 RS1O15537 224 aa11.89□□□□□ -0.51
VPS54-201ENST00000272322 CLPSL2Q6UWE3 100 aa11.89□□□□□ -0.51
VPS54-201ENST00000272322 TMEM101Q96IK0 257 aa11.89□□□□□ -0.51
VPS54-201ENST00000272322 CIDEAO60543 219 aa11.89□□□□□ -0.51
VPS54-201ENST00000272322 UBE2L6O14933 153 aa11.88□□□□□ -0.51
VPS54-201ENST00000272322 ANKRD29Q8N6D5 301 aa11.88□□□□□ -0.51
VPS54-201ENST00000272322 TMEM263Q8WUH6 116 aaKnown RBP11.88□□□□□ -0.51
VPS54-201ENST00000272322 SPATA3Q8NHX4 192 aa11.88□□□□□ -0.51
VPS54-201ENST00000272322 PYGO1Q9Y3Y4 419 aa11.88□□□□□ -0.51
VPS54-201ENST00000272322 GIG44P09565 113 aaPredicted RBP11.87□□□□□ -0.51
VPS54-201ENST00000272322 SPANXA1Q9NS26 97 aa11.87□□□□□ -0.51
VPS54-201ENST00000272322 NSD1Q96L73 2696 aaPredicted RBP11.87□□□□□ -0.51
VPS54-201ENST00000272322 K7EQD1 137 aa11.87□□□□□ -0.51
VPS54-201ENST00000272322 TRIAP1O43715 76 aa11.87□□□□□ -0.51
VPS54-201ENST00000272322 LINC00482Q8N8I6 264 aa11.87□□□□□ -0.51
VPS54-201ENST00000272322 SLC25A20O43772 301 aa11.87□□□□□ -0.51
VPS54-201ENST00000272322 LINC00242Q5T6M2 205 aa11.87□□□□□ -0.51
VPS54-201ENST00000272322 PF4P02776 101 aa11.86□□□□□ -0.51
VPS54-201ENST00000272322 PRIMA1Q86XR5 153 aa11.86□□□□□ -0.51
VPS54-201ENST00000272322 CARD19Q96LW7 228 aa11.86□□□□□ -0.51
VPS54-201ENST00000272322 CRLF1O75462 422 aa11.86□□□□□ -0.51
VPS54-201ENST00000272322 FHL3Q13643 280 aa11.86□□□□□ -0.51
VPS54-201ENST00000272322 CHCHD5Q9BSY4 110 aa11.86□□□□□ -0.51
VPS54-201ENST00000272322 C1QTNF4Q9BXJ3 329 aa11.86□□□□□ -0.51
VPS54-201ENST00000272322 F8P00451 2351 aa11.86□□□□□ -0.51
VPS54-201ENST00000272322 TINCRA0A1B0GVN0 87 aa11.85□□□□□ -0.51
VPS54-201ENST00000272322 BEAN1Q3B7T3 259 aa11.85□□□□□ -0.51
VPS54-201ENST00000272322 LITAFQ99732 161 aa11.85□□□□□ -0.51
VPS54-201ENST00000272322 KRTAP1-1Q07627 177 aa11.85□□□□□ -0.51
VPS54-201ENST00000272322 NTN5Q8WTR8 489 aaPredicted RBP11.85□□□□□ -0.51
VPS54-201ENST00000272322 NOTCH1P46531 2555 aa11.84□□□□□ -0.51
VPS54-201ENST00000272322 TMEM262E9PQX1 116 aa11.84□□□□□ -0.51
VPS54-201ENST00000272322 PIK3CD-AS1Q5SR53 167 aa11.84□□□□□ -0.51
VPS54-201ENST00000272322 STAB1Q9NY15 2570 aa11.84□□□□□ -0.51
VPS54-201ENST00000272322 RPL13AP40429 203 aaKnown RBP11.83□□□□□ -0.52
VPS54-201ENST00000272322 LYRM7Q5U5X0 104 aa11.83□□□□□ -0.52
VPS54-201ENST00000272322 A8MTW9 85 aa11.83□□□□□ -0.52
VPS54-201ENST00000272322 TEX49A0A1B0GTD5 131 aa11.83□□□□□ -0.52
VPS54-201ENST00000272322 MT-ATP8P03928 68 aa11.83□□□□□ -0.52
VPS54-201ENST00000272322 C5orf38Q86SI9 138 aa11.83□□□□□ -0.52
VPS54-201ENST00000272322 TEN1Q86WV5 123 aa11.81□□□□□ -0.52
VPS54-201ENST00000272322 MAST4O15021 2626 aa11.81□□□□□ -0.52
VPS54-201ENST00000272322 IGLV4-60A0A075B6I1 120 aa11.81□□□□□ -0.52
VPS54-201ENST00000272322 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.81□□□□□ -0.52
VPS54-201ENST00000272322 MIAQ16674 131 aa11.8□□□□□ -0.52
VPS54-201ENST00000272322 DNAJC30Q96LL9 226 aa11.8□□□□□ -0.52
VPS54-201ENST00000272322 TRBV20-1A0A075B6N2 111 aa11.8□□□□□ -0.52
VPS54-201ENST00000272322 PFN2P35080 140 aa11.79□□□□□ -0.52
VPS54-201ENST00000272322 TMEM86BQ8N661 226 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms