RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W HSP33Q08914 237 aaKnown RBP6.29□□□□□ -1.4
PRP40YKL012W HSP32Q08992 237 aa6.29□□□□□ -1.4
PRP40YKL012W CDC16P09798 840 aa6.28□□□□□ -1.4
PRP40YKL012W CNS1P33313 385 aa6.28□□□□□ -1.4
PRP40YKL012W TOD6P34219 525 aa6.28□□□□□ -1.4
PRP40YKL012W MNN10P50108 393 aaKnown RBP6.28□□□□□ -1.4
PRP40YKL012W COX17Q12287 69 aa6.28□□□□□ -1.4
PRP40YKL012W SUL2Q12325 893 aa6.28□□□□□ -1.4
PRP40YKL012W SEM1O94742 89 aa6.27□□□□□ -1.41
PRP40YKL012W TPK1P06244 397 aa6.27□□□□□ -1.41
PRP40YKL012W PRP6P19735 899 aaPredicted RBP6.27□□□□□ -1.41
PRP40YKL012W NTH1P32356 751 aa6.27□□□□□ -1.41
PRP40YKL012W REV7P38927 245 aa6.27□□□□□ -1.41
PRP40YKL012W MPS3P47069 682 aa6.27□□□□□ -1.41
PRP40YKL012W PAN2P53010 1115 aaPredicted RBP6.27□□□□□ -1.41
PRP40YKL012W GSF2Q04697 403 aaKnown RBP6.27□□□□□ -1.41
PRP40YKL012W IRC13Q08630 104 aa6.27□□□□□ -1.41
PRP40YKL012W PCD1Q12524 340 aa6.27□□□□□ -1.41
PRP40YKL012W YKL033W-AQ86ZR7 236 aa6.27□□□□□ -1.41
PRP40YKL012W FOB1O13329 566 aa6.26□□□□□ -1.41
PRP40YKL012W SIR3P06701 978 aa6.26□□□□□ -1.41
PRP40YKL012W PRE2P30656 287 aaKnown RBP6.26□□□□□ -1.41
PRP40YKL012W DSS4P32601 143 aa6.26□□□□□ -1.41
PRP40YKL012W KHA1P40309 873 aa6.26□□□□□ -1.41
PRP40YKL012W YJL163CP46996 555 aa6.26□□□□□ -1.41
PRP40YKL012W MCM6P53091 1017 aaKnown RBP6.26□□□□□ -1.41
PRP40YKL012W IZH3Q07959 543 aa6.26□□□□□ -1.41
PRP40YKL012W PET122P10355 254 aa6.26□□□□□ -1.41
PRP40YKL012W MRP7P12687 371 aa6.26□□□□□ -1.41
PRP40YKL012W ERP4Q12450 207 aa6.26□□□□□ -1.41
PRP40YKL012W YLR358CO13565 187 aa6.25□□□□□ -1.41
PRP40YKL012W VPS34P22543 875 aa6.25□□□□□ -1.41
PRP40YKL012W NFU1P32860 256 aa6.25□□□□□ -1.41
PRP40YKL012W DHR2P36009 735 aaPredicted RBP6.25□□□□□ -1.41
PRP40YKL012W CTP1P38152 299 aa6.25□□□□□ -1.41
PRP40YKL012W PRP43P53131 767 aaKnown RBP6.25□□□□□ -1.41
PRP40YKL012W YPL108WQ02872 168 aaPredicted RBP6.25□□□□□ -1.41
PRP40YKL012W HOF1Q05080 669 aa6.25□□□□□ -1.41
PRP40YKL012W TRM13Q12383 476 aa6.25□□□□□ -1.41
PRP40YKL012W HIS7P33734 552 aaKnown RBP6.24□□□□□ -1.41
PRP40YKL012W PHO11P35842 467 aa6.24□□□□□ -1.41
PRP40YKL012W PHO12P38693 467 aa6.24□□□□□ -1.41
PRP40YKL012W ARB1P40024 610 aaKnown RBP6.24□□□□□ -1.41
PRP40YKL012W IDS2P46958 469 aa6.24□□□□□ -1.41
PRP40YKL012W FHN1P53279 174 aa6.24□□□□□ -1.41
PRP40YKL012W YKU80Q04437 629 aa6.24□□□□□ -1.41
PRP40YKL012W VAM6Q07468 1049 aa6.24□□□□□ -1.41
PRP40YKL012W FRE5Q08908 694 aa6.24□□□□□ -1.41
PRP40YKL012W FMP52P40008 231 aa6.23□□□□□ -1.41
PRP40YKL012W COG1P53079 417 aa6.23□□□□□ -1.41
PRP40YKL012W BSC5P53755 489 aa6.23□□□□□ -1.41
PRP40YKL012W CSL4P53859 292 aaPredicted RBP6.23□□□□□ -1.41
PRP40YKL012W MET8P15807 274 aa6.23□□□□□ -1.41
PRP40YKL012W MRPL7P36519 292 aa6.23□□□□□ -1.41
PRP40YKL012W SIP4P46954 829 aa6.23□□□□□ -1.41
PRP40YKL012W ZAP1P47043 880 aa6.23□□□□□ -1.41
PRP40YKL012W RBG2P53295 368 aaKnown RBP6.23□□□□□ -1.41
PRP40YKL012W EFR3Q03653 782 aaKnown RBP6.23□□□□□ -1.41
PRP40YKL012W MLH3Q12083 715 aa6.23□□□□□ -1.41
PRP40YKL012W PMA1P05030 918 aaKnown RBP6.22□□□□□ -1.41
PRP40YKL012W TY2A-LR1P0C2J4 438 aa6.22□□□□□ -1.41
PRP40YKL012W TY2A-FP0CX61 438 aa6.22□□□□□ -1.41
PRP40YKL012W TY2A-GR2P0CX62 438 aa6.22□□□□□ -1.41
PRP40YKL012W ERG4P25340 473 aa6.22□□□□□ -1.41
PRP40YKL012W TY2A-CP25383 438 aa6.22□□□□□ -1.41
PRP40YKL012W CMK1P27466 446 aaKnown RBP6.22□□□□□ -1.41
PRP40YKL012W CAP1P28495 268 aaKnown RBP6.22□□□□□ -1.41
PRP40YKL012W SWC3P31376 625 aa6.22□□□□□ -1.41
PRP40YKL012W IST3P40565 148 aaPredicted RBP6.22□□□□□ -1.41
PRP40YKL012W YAP1802P53309 568 aa6.22□□□□□ -1.41
PRP40YKL012W TY2A-DR2Q03483 438 aa6.22□□□□□ -1.41
PRP40YKL012W CLU1Q03690 1277 aaKnown RBP6.22□□□□□ -1.41
PRP40YKL012W SPC19Q03954 165 aa6.22□□□□□ -1.41
PRP40YKL012W TY2A-BQ12260 438 aa6.22□□□□□ -1.41
PRP40YKL012W TY2A-OR2Q12293 438 aa6.22□□□□□ -1.41
PRP40YKL012W TY2A-DR1Q12392 438 aa6.22□□□□□ -1.41
PRP40YKL012W TY2A-OR1Q12439 438 aa6.22□□□□□ -1.41
PRP40YKL012W TY2A-DR3Q99303 438 aa6.22□□□□□ -1.41
PRP40YKL012W THR1P17423 357 aaKnown RBP6.21□□□□□ -1.41
PRP40YKL012W FUB1P25659 250 aa6.21□□□□□ -1.41
PRP40YKL012W EFT1P32324 842 aaKnown RBP6.21□□□□□ -1.41
PRP40YKL012W MAC1P35192 417 aa6.21□□□□□ -1.41
PRP40YKL012W YJR061WP40355 935 aa6.21□□□□□ -1.41
PRP40YKL012W LYS14P40971 790 aa6.21□□□□□ -1.41
PRP40YKL012W TDA9Q04545 1251 aa6.21□□□□□ -1.41
PRP40YKL012W NBP2Q12163 236 aa6.21□□□□□ -1.41
PRP40YKL012W RVB2Q12464 471 aaKnown RBP6.21□□□□□ -1.41
PRP40YKL012W YLR302CO13544 120 aa6.21□□□□□ -1.42
PRP40YKL012W YCR061WP25639 631 aa6.21□□□□□ -1.42
PRP40YKL012W GCD7P32502 381 aaPredicted RBP6.21□□□□□ -1.42
PRP40YKL012W NUP120P35729 1037 aa6.21□□□□□ -1.42
PRP40YKL012W ESL2P36168 1195 aa6.21□□□□□ -1.42
PRP40YKL012W TAM41P53230 385 aa6.21□□□□□ -1.42
PRP40YKL012W SKM1Q12469 655 aa6.21□□□□□ -1.42
PRP40YKL012W ELF1P36053 145 aa6.2□□□□□ -1.42
PRP40YKL012W SGM1P47166 707 aa6.2□□□□□ -1.42
PRP40YKL012W MDG1P53885 366 aa6.2□□□□□ -1.42
PRP40YKL012W USA1Q03714 838 aa6.2□□□□□ -1.42
PRP40YKL012W YSH1Q06224 779 aaPredicted RBP6.2□□□□□ -1.42
PRP40YKL012W ATP2P00830 511 aaKnown RBP6.19□□□□□ -1.42
Retrieved 100 of 5,963 RNA–protein pairs in 31.7 ms