RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 CETPP11597 493 aa12.65□□□□□ -0.38
SCN1A-222ENST00000642141 PPIL2Q13356 520 aa12.65□□□□□ -0.38
SCN1A-222ENST00000642141 NSUN4Q96CB9 384 aaKnown RBP12.65□□□□□ -0.38
SCN1A-222ENST00000642141 ZFYVE28Q9HCC9 887 aa12.65□□□□□ -0.38
SCN1A-222ENST00000642141 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.65□□□□□ -0.38
SCN1A-222ENST00000642141 ZNF112Q9UJU3 913 aa12.65□□□□□ -0.38
SCN1A-222ENST00000642141 PDS5AQ29RF7 1337 aaKnown RBP12.64□□□□□ -0.39
SCN1A-222ENST00000642141 MYH2Q9UKX2 1941 aa12.64□□□□□ -0.39
SCN1A-222ENST00000642141 TNRC18O15417 2968 aaPredicted RBP12.64□□□□□ -0.39
SCN1A-222ENST00000642141 GPR75-ASB3A0A0A6YYF3 556 aa12.64□□□□□ -0.39
SCN1A-222ENST00000642141 ENTPD3O75355 529 aa12.64□□□□□ -0.39
SCN1A-222ENST00000642141 UQCRFS1P1P0C7P4 283 aa12.64□□□□□ -0.39
SCN1A-222ENST00000642141 RHBDL3P58872 404 aa12.64□□□□□ -0.39
SCN1A-222ENST00000642141 GSTO1P78417 241 aa12.64□□□□□ -0.39
SCN1A-222ENST00000642141 CCDC158Q5M9N0 1113 aa12.64□□□□□ -0.39
SCN1A-222ENST00000642141 CEP85Q6P2H3 762 aa12.64□□□□□ -0.39
SCN1A-222ENST00000642141 SH3RF3Q8TEJ3 882 aaPredicted RBP12.64□□□□□ -0.39
SCN1A-222ENST00000642141 FAM163AQ96GL9 167 aaPredicted RBP12.64□□□□□ -0.39
SCN1A-222ENST00000642141 ERO1AQ96HE7 468 aa12.64□□□□□ -0.39
SCN1A-222ENST00000642141 IDI2Q9BXS1 227 aa12.64□□□□□ -0.39
SCN1A-222ENST00000642141 EFCC1Q9HA90 598 aa12.64□□□□□ -0.39
SCN1A-222ENST00000642141 EXOC6BQ9Y2D4 811 aa12.64□□□□□ -0.39
SCN1A-222ENST00000642141 COG6Q9Y2V7 657 aa12.64□□□□□ -0.39
SCN1A-222ENST00000642141 NDUFB9Q9Y6M9 179 aa12.64□□□□□ -0.39
SCN1A-222ENST00000642141 RPAP1Q9BWH6 1393 aaPredicted RBP12.64□□□□□ -0.39
SCN1A-222ENST00000642141 PHF20L1A8MW92 1017 aa12.63□□□□□ -0.39
SCN1A-222ENST00000642141 CYP2E1P05181 493 aaPredicted RBP12.63□□□□□ -0.39
SCN1A-222ENST00000642141 LDHCP07864 332 aa12.63□□□□□ -0.39
SCN1A-222ENST00000642141 ZAP70P43403 619 aa12.63□□□□□ -0.39
SCN1A-222ENST00000642141 PPATQ06203 517 aa12.63□□□□□ -0.39
SCN1A-222ENST00000642141 CCDC84Q86UT8 332 aaPredicted RBP12.63□□□□□ -0.39
SCN1A-222ENST00000642141 EAF2Q96CJ1 260 aaPredicted RBP12.63□□□□□ -0.39
SCN1A-222ENST00000642141 PICK1Q9NRD5 415 aa12.63□□□□□ -0.39
SCN1A-222ENST00000642141 DBNLQ9UJU6 430 aaKnown RBP12.63□□□□□ -0.39
SCN1A-222ENST00000642141 NOP58Q9Y2X3 529 aaKnown RBP12.63□□□□□ -0.39
SCN1A-222ENST00000642141 ZHX2Q9Y6X8 837 aa12.63□□□□□ -0.39
SCN1A-222ENST00000642141 HTTP42858 3142 aa12.62□□□□□ -0.39
SCN1A-222ENST00000642141 PDHXO00330 501 aa12.62□□□□□ -0.39
SCN1A-222ENST00000642141 MYCP01106 439 aaPredicted RBP12.62□□□□□ -0.39
SCN1A-222ENST00000642141 NAA16Q6N069 864 aaPredicted RBP12.62□□□□□ -0.39
SCN1A-222ENST00000642141 ADGRA1Q86SQ6 560 aa12.62□□□□□ -0.39
SCN1A-222ENST00000642141 TEX11Q8IYF3 940 aa12.62□□□□□ -0.39
SCN1A-222ENST00000642141 ARHGAP39Q9C0H5 1083 aa12.62□□□□□ -0.39
SCN1A-222ENST00000642141 IL1RAPL2Q9NP60 686 aa12.62□□□□□ -0.39
SCN1A-222ENST00000642141 GPR108Q9NPR9 543 aa12.62□□□□□ -0.39
SCN1A-222ENST00000642141 PIH1D3Q9NQM4 214 aaKnown RBP12.62□□□□□ -0.39
SCN1A-222ENST00000642141 AATFQ9NY61 560 aaKnown RBP eCLIP12.62□□□□□ -0.39
SCN1A-222ENST00000642141 CPA4Q9UI42 421 aa12.62□□□□□ -0.39
SCN1A-222ENST00000642141 PTPN22Q9Y2R2 807 aa12.62□□□□□ -0.39
SCN1A-222ENST00000642141 CENPFP49454 3210 aa12.61□□□□□ -0.39
SCN1A-222ENST00000642141 ATRNL1Q5VV63 1379 aa12.61□□□□□ -0.39
SCN1A-222ENST00000642141 ZBTB22O15209 634 aa12.61□□□□□ -0.39
SCN1A-222ENST00000642141 PTPRAP18433 802 aa12.61□□□□□ -0.39
SCN1A-222ENST00000642141 SLC4A8Q2Y0W8 1093 aa12.61□□□□□ -0.39
SCN1A-222ENST00000642141 NOL9Q5SY16 702 aaKnown RBP12.61□□□□□ -0.39
SCN1A-222ENST00000642141 AACSQ86V21 672 aa12.61□□□□□ -0.39
SCN1A-222ENST00000642141 NOL10Q9BSC4 688 aaKnown RBP12.61□□□□□ -0.39
SCN1A-222ENST00000642141 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.61□□□□□ -0.39
SCN1A-222ENST00000642141 RCAN3Q9UKA8 241 aa12.61□□□□□ -0.39
SCN1A-222ENST00000642141 RFX7Q2KHR2 1363 aa12.6□□□□□ -0.39
SCN1A-222ENST00000642141 TRIM75PA6NK02 468 aa12.6□□□□□ -0.39
SCN1A-222ENST00000642141 TLR2O60603 784 aa12.6□□□□□ -0.39
SCN1A-222ENST00000642141 IDH1O75874 414 aaKnown RBP12.6□□□□□ -0.39
SCN1A-222ENST00000642141 CYP2C8P10632 490 aa12.6□□□□□ -0.39
SCN1A-222ENST00000642141 MOGSQ13724 837 aa12.6□□□□□ -0.39
SCN1A-222ENST00000642141 GADL1Q6ZQY3 521 aa12.6□□□□□ -0.39
SCN1A-222ENST00000642141 SCYL3Q8IZE3 742 aa12.6□□□□□ -0.39
SCN1A-222ENST00000642141 TGFBRAP1Q8WUH2 860 aa12.6□□□□□ -0.39
SCN1A-222ENST00000642141 SAP30BPQ9UHR5 308 aaKnown RBP12.6□□□□□ -0.39
SCN1A-222ENST00000642141 KCNH4Q9UQ05 1017 aa12.6□□□□□ -0.39
SCN1A-222ENST00000642141 POTEFA5A3E0 1075 aa12.59□□□□□ -0.39
SCN1A-222ENST00000642141 CYP7A1P22680 504 aa12.59□□□□□ -0.39
SCN1A-222ENST00000642141 DYNLL1P63167 89 aaKnown RBP12.59□□□□□ -0.39
SCN1A-222ENST00000642141 C20orf194Q5TEA3 1177 aa12.59□□□□□ -0.39
SCN1A-222ENST00000642141 GPAT2Q6NUI2 795 aa12.59□□□□□ -0.39
SCN1A-222ENST00000642141 ANKRD23Q86SG2 305 aa12.59□□□□□ -0.39
SCN1A-222ENST00000642141 MAPKAPK5Q8IW41 473 aa12.59□□□□□ -0.39
SCN1A-222ENST00000642141 OSBPL5Q9H0X9 879 aaPredicted RBP12.59□□□□□ -0.39
SCN1A-222ENST00000642141 ANTXR1Q9H6X2 564 aa12.59□□□□□ -0.39
SCN1A-222ENST00000642141 CTNND1O60716 968 aaKnown RBP12.58□□□□□ -0.4
SCN1A-222ENST00000642141 BAG3O95817 575 aa12.58□□□□□ -0.4
SCN1A-222ENST00000642141 MS4A1P11836 297 aa12.58□□□□□ -0.4
SCN1A-222ENST00000642141 MAP3K10Q02779 954 aa12.58□□□□□ -0.4
SCN1A-222ENST00000642141 RRP1BQ14684 758 aaKnown RBP12.58□□□□□ -0.4
SCN1A-222ENST00000642141 KIF22Q14807 665 aa12.58□□□□□ -0.4
SCN1A-222ENST00000642141 SIRT2Q8IXJ6 389 aa12.58□□□□□ -0.4
SCN1A-222ENST00000642141 MIGA1Q8NAN2 632 aa12.58□□□□□ -0.4
SCN1A-222ENST00000642141 ZBTB40Q9NUA8 1239 aa12.58□□□□□ -0.4
SCN1A-222ENST00000642141 PALD1Q9ULE6 856 aa12.58□□□□□ -0.4
SCN1A-222ENST00000642141 AFG3L2Q9Y4W6 797 aa12.58□□□□□ -0.4
SCN1A-222ENST00000642141 PTCH2Q9Y6C5 1203 aa12.58□□□□□ -0.4
SCN1A-222ENST00000642141 LAMB1P07942 1786 aa12.57□□□□□ -0.4
SCN1A-222ENST00000642141 CXCL11O14625 94 aa12.57□□□□□ -0.4
SCN1A-222ENST00000642141 CTGFP29279 349 aa12.57□□□□□ -0.4
SCN1A-222ENST00000642141 LACTBP83111 547 aaPredicted RBP12.57□□□□□ -0.4
SCN1A-222ENST00000642141 C17orf99Q6UX52 265 aa12.57□□□□□ -0.4
SCN1A-222ENST00000642141 ERC1Q8IUD2 1116 aa12.57□□□□□ -0.4
SCN1A-222ENST00000642141 MAGEB6Q8N7X4 407 aa12.57□□□□□ -0.4
SCN1A-222ENST00000642141 RHPN1Q8TCX5 695 aa12.57□□□□□ -0.4
SCN1A-222ENST00000642141 SH3TC2Q8TF17 1288 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms