RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, human

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-231	ENST00000640499	BAG3	O95817	575 aa		32.4	■■■□□ 2.78
VEGFA-231	ENST00000640499	SLURP2	P0DP57	97 aa		32.4	■■■□□ 2.78
VEGFA-231	ENST00000640499	NUCB1	Q02818	461 aa		32.4	■■■□□ 2.78
VEGFA-231	ENST00000640499	MIGA2	Q7L4E1	593 aa		32.4	■■■□□ 2.78
VEGFA-231	ENST00000640499	CCDC102A	Q96A19	550 aa		32.4	■■■□□ 2.78
VEGFA-231	ENST00000640499	GPATCH3	Q96I76	525 aa		32.4	■■■□□ 2.78
VEGFA-231	ENST00000640499	TMED8	Q6PL24	325 aa	Predicted RBP	32.39	■■■□□ 2.78
VEGFA-231	ENST00000640499	RIOK1	Q9BRS2	568 aa	Known RBP	32.39	■■■□□ 2.78
VEGFA-231	ENST00000640499	STAP2	Q9UGK3	403 aa		32.39	■■■□□ 2.78
VEGFA-231	ENST00000640499	ZNF532	Q9HCE3	1301 aa		32.39	■■■□□ 2.78
VEGFA-231	ENST00000640499	AK9	Q5TCS8	1911 aa		32.39	■■■□□ 2.78
VEGFA-231	ENST00000640499	ADD2	P35612	726 aa		32.38	■■■□□ 2.77
VEGFA-231	ENST00000640499	MAP2K2	P36507	400 aa		32.38	■■■□□ 2.77
VEGFA-231	ENST00000640499	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	32.38	■■■□□ 2.77
VEGFA-231	ENST00000640499	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	32.38	■■■□□ 2.77	1e-6	■□□□□ 11.1
VEGFA-231	ENST00000640499	FOCAD	Q5VW36	1801 aa		32.37	■■■□□ 2.77
VEGFA-231	ENST00000640499	CHD1L	Q86WJ1	897 aa		32.37	■■■□□ 2.77
VEGFA-231	ENST00000640499	NOL10	Q9BSC4	688 aa	Known RBP	32.37	■■■□□ 2.77
VEGFA-231	ENST00000640499	OSBPL5	Q9H0X9	879 aa	Predicted RBP	32.37	■■■□□ 2.77
VEGFA-231	ENST00000640499	PLCG2	P16885	1265 aa		32.36	■■■□□ 2.77
VEGFA-231	ENST00000640499	IREB2	P48200	963 aa	Known RBP	32.36	■■■□□ 2.77
VEGFA-231	ENST00000640499	PDE1A	P54750	535 aa		32.36	■■■□□ 2.77
VEGFA-231	ENST00000640499	TGFBRAP1	Q8WUH2	860 aa		32.36	■■■□□ 2.77
VEGFA-231	ENST00000640499	MYH7	P12883	1935 aa		32.36	■■■□□ 2.77
VEGFA-231	ENST00000640499	UNCX	A6NJT0	531 aa		32.35	■■■□□ 2.77
VEGFA-231	ENST00000640499	MAP3K10	Q02779	954 aa		32.35	■■■□□ 2.77
VEGFA-231	ENST00000640499	NOG	Q13253	232 aa		32.35	■■■□□ 2.77
VEGFA-231	ENST00000640499	WBP1L	Q9NX94	342 aa		32.35	■■■□□ 2.77
VEGFA-231	ENST00000640499	GLRX3	O76003	335 aa	Known RBP	32.34	■■■□□ 2.77
VEGFA-231	ENST00000640499	MAP3K9	P80192	1104 aa		32.34	■■■□□ 2.77
VEGFA-231	ENST00000640499	KIF23	Q02241	960 aa	Predicted RBP	32.34	■■■□□ 2.77
VEGFA-231	ENST00000640499	MAPKAPK5	Q8IW41	473 aa		32.34	■■■□□ 2.77
VEGFA-231	ENST00000640499	ANKRD13A	Q8IZ07	590 aa		32.34	■■■□□ 2.77
VEGFA-231	ENST00000640499	KBTBD3	Q8NAB2	608 aa		32.34	■■■□□ 2.77
VEGFA-231	ENST00000640499	CSRNP1	Q96S65	589 aa		32.34	■■■□□ 2.77
VEGFA-231	ENST00000640499	ZBTB47	Q9UFB7	747 aa	Predicted RBP	32.34	■■■□□ 2.77
VEGFA-231	ENST00000640499	ZNF112	Q9UJU3	913 aa		32.34	■■■□□ 2.77
VEGFA-231	ENST00000640499	FLT1	P17948	1338 aa		32.33	■■■□□ 2.77
VEGFA-231	ENST00000640499	COL2A1	P02458	1487 aa	Predicted RBP	32.33	■■■□□ 2.77
VEGFA-231	ENST00000640499	MAGEB6P1	A0A0J9YX57	407 aa		32.32	■■■□□ 2.76
VEGFA-231	ENST00000640499	ERC2	O15083	957 aa		32.32	■■■□□ 2.76
VEGFA-231	ENST00000640499	GJA5	P36382	358 aa		32.32	■■■□□ 2.76
VEGFA-231	ENST00000640499	VGLL4	Q14135	290 aa		32.32	■■■□□ 2.76
VEGFA-231	ENST00000640499	UBE3C	Q15386	1083 aa		32.32	■■■□□ 2.76
VEGFA-231	ENST00000640499	DCAF15	Q66K64	600 aa		32.32	■■■□□ 2.76
VEGFA-231	ENST00000640499	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	32.32	■■■□□ 2.76
VEGFA-231	ENST00000640499	HOOK2	Q96ED9	719 aa		32.32	■■■□□ 2.76
VEGFA-231	ENST00000640499	SLC10A4	Q96EP9	437 aa		32.32	■■■□□ 2.76
VEGFA-231	ENST00000640499	SIPA1L1	O43166	1804 aa		32.31	■■■□□ 2.76
VEGFA-231	ENST00000640499	PHF20L1	A8MW92	1017 aa		32.31	■■■□□ 2.76
VEGFA-231	ENST00000640499	HSPA1A	P0DMV8	641 aa	Known RBP	32.31	■■■□□ 2.76
VEGFA-231	ENST00000640499	HSPA1B	P0DMV9	641 aa	Known RBP	32.31	■■■□□ 2.76
VEGFA-231	ENST00000640499	SPRYD7	Q5W111	196 aa		32.31	■■■□□ 2.76
VEGFA-231	ENST00000640499	ZKSCAN4	Q969J2	545 aa	Predicted RBP	32.31	■■■□□ 2.76
VEGFA-231	ENST00000640499	ZNF341	Q9BYN7	854 aa		32.31	■■■□□ 2.76
VEGFA-231	ENST00000640499	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	32.31	■■■□□ 2.76	1e-12	■■■□□ 17.3
VEGFA-231	ENST00000640499	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	32.31	■■■□□ 2.76
VEGFA-231	ENST00000640499	INPP5B	P32019	993 aa		32.3	■■■□□ 2.76
VEGFA-231	ENST00000640499	MKRN3	Q13064	507 aa	Known RBP	32.3	■■■□□ 2.76
VEGFA-231	ENST00000640499	PLEKHM2	Q8IWE5	1019 aa		32.3	■■■□□ 2.76
VEGFA-231	ENST00000640499	LCORL	Q8N3X6	602 aa		32.3	■■■□□ 2.76
VEGFA-231	ENST00000640499	CNKSR2	Q8WXI2	1034 aa		32.3	■■■□□ 2.76
VEGFA-231	ENST00000640499	WRNIP1	Q96S55	665 aa		32.3	■■■□□ 2.76
VEGFA-231	ENST00000640499	SNCAIP	Q9Y6H5	919 aa		32.3	■■■□□ 2.76
VEGFA-231	ENST00000640499	WNK4	Q96J92	1243 aa		32.29	■■■□□ 2.76
VEGFA-231	ENST00000640499	ELP3	Q9H9T3	547 aa		32.29	■■■□□ 2.76
VEGFA-231	ENST00000640499	PUS7L	Q9H0K6	701 aa	Known RBP	32.28	■■■□□ 2.76
VEGFA-231	ENST00000640499	MAP2K1	Q02750	393 aa	Predicted RBP	32.27	■■■□□ 2.76
VEGFA-231	ENST00000640499	CERS3	Q8IU89	383 aa		32.27	■■■□□ 2.76
VEGFA-231	ENST00000640499	ARMT1	Q9H993	441 aa		32.27	■■■□□ 2.76
VEGFA-231	ENST00000640499	PALD1	Q9ULE6	856 aa		32.27	■■■□□ 2.76
VEGFA-231	ENST00000640499	FAM196B	A6NMK8	535 aa		32.26	■■■□□ 2.75
VEGFA-231	ENST00000640499	TBC1D12	O60347	775 aa		32.26	■■■□□ 2.75
VEGFA-231	ENST00000640499	PDE4A	P27815	886 aa		32.26	■■■□□ 2.75
VEGFA-231	ENST00000640499	SAP30BP	Q9UHR5	308 aa	Known RBP	32.26	■■■□□ 2.75
VEGFA-231	ENST00000640499	RNF113A	O15541	343 aa	Known RBP	32.25	■■■□□ 2.75
VEGFA-231	ENST00000640499	ZSCAN25	Q6NSZ9	544 aa		32.25	■■■□□ 2.75
VEGFA-231	ENST00000640499	OSBPL3	Q9H4L5	887 aa		32.25	■■■□□ 2.75
VEGFA-231	ENST00000640499	MYH1	P12882	1939 aa		32.24	■■■□□ 2.75
VEGFA-231	ENST00000640499	FOXN1	O15353	648 aa		32.24	■■■□□ 2.75
VEGFA-231	ENST00000640499	PRKAB2	O43741	272 aa		32.24	■■■□□ 2.75
VEGFA-231	ENST00000640499	MBD4	O95243	580 aa		32.24	■■■□□ 2.75
VEGFA-231	ENST00000640499	RRP1B	Q14684	758 aa	Known RBP	32.24	■■■□□ 2.75
VEGFA-231	ENST00000640499	OSBP2	Q969R2	916 aa		32.24	■■■□□ 2.75
VEGFA-231	ENST00000640499	OPTN	Q96CV9	577 aa		32.24	■■■□□ 2.75
VEGFA-231	ENST00000640499	LAMB1	P07942	1786 aa		32.23	■■■□□ 2.75
VEGFA-231	ENST00000640499	USP5	P45974	858 aa		32.23	■■■□□ 2.75
VEGFA-231	ENST00000640499	METTL16	Q86W50	562 aa	Known RBP	32.23	■■■□□ 2.75
VEGFA-231	ENST00000640499	SDR42E1	Q8WUS8	393 aa		32.23	■■■□□ 2.75
VEGFA-231	ENST00000640499	DHX36	Q9H2U1	1008 aa	Known RBP	32.23	■■■□□ 2.75
VEGFA-231	ENST00000640499	PI4KB	Q9UBF8	816 aa		32.23	■■■□□ 2.75
VEGFA-231	ENST00000640499	CSAD	Q9Y600	493 aa		32.23	■■■□□ 2.75
VEGFA-231	ENST00000640499	DDX60L	Q5H9U9	1706 aa	Known RBP	32.23	■■■□□ 2.75
VEGFA-231	ENST00000640499	SPDYE5	A6NIY4	337 aa		32.22	■■■□□ 2.75
VEGFA-231	ENST00000640499	ZBTB48	P10074	688 aa	Predicted RBP	32.22	■■■□□ 2.75
VEGFA-231	ENST00000640499	DNAJC18	Q9H819	358 aa		32.22	■■■□□ 2.75
VEGFA-231	ENST00000640499	TM4SF4	P48230	202 aa		32.21	■■■□□ 2.75
VEGFA-231	ENST00000640499	NOL9	Q5SY16	702 aa	Known RBP	32.21	■■■□□ 2.75
VEGFA-231	ENST00000640499	CRNKL1	Q9BZJ0	848 aa	Known RBP	32.21	■■■□□ 2.75
VEGFA-231	ENST00000640499	EVX2	Q03828	476 aa		32.2	■■■□□ 2.75

Retrieved 100 of 20,778 RNA–protein pairs in 93.6 ms