RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 NOP2P46087 812 aaKnown RBP11.85□□□□□ -0.51
LIG1-220ENST00000601091 ZSCAN26Q16670 478 aa11.85□□□□□ -0.51
LIG1-220ENST00000601091 LONRF3Q496Y0 759 aa11.85□□□□□ -0.51
LIG1-220ENST00000601091 ANO1Q5XXA6 986 aa11.85□□□□□ -0.51
LIG1-220ENST00000601091 TTLL7Q6ZT98 887 aa11.85□□□□□ -0.51
LIG1-220ENST00000601091 ANKRD13AQ8IZ07 590 aa11.85□□□□□ -0.51
LIG1-220ENST00000601091 VTI1AQ96AJ9 217 aa11.85□□□□□ -0.51
LIG1-220ENST00000601091 KRT23Q9C075 422 aa11.85□□□□□ -0.51
LIG1-220ENST00000601091 CNNM2Q9H8M5 875 aa11.85□□□□□ -0.51
LIG1-220ENST00000601091 PUF60Q9UHX1 559 aaKnown RBP11.85□□□□□ -0.51
LIG1-220ENST00000601091 GPAA1O43292 621 aa11.84□□□□□ -0.51
LIG1-220ENST00000601091 CCDC175P0C221 793 aa11.84□□□□□ -0.51
LIG1-220ENST00000601091 TOB2Q14106 344 aaPredicted RBP11.84□□□□□ -0.51
LIG1-220ENST00000601091 ADALQ6DHV7 355 aa11.84□□□□□ -0.51
LIG1-220ENST00000601091 PHC3Q8NDX5 983 aa11.84□□□□□ -0.51
LIG1-220ENST00000601091 GIMAP7Q8NHV1 300 aa11.84□□□□□ -0.51
LIG1-220ENST00000601091 MRFAP1L1Q96HT8 127 aa11.84□□□□□ -0.51
LIG1-220ENST00000601091 GPR108Q9NPR9 543 aa11.84□□□□□ -0.51
LIG1-220ENST00000601091 RPAP1Q9BWH6 1393 aaPredicted RBP11.84□□□□□ -0.51
LIG1-220ENST00000601091 TULP2O00295 520 aa11.84□□□□□ -0.51
LIG1-220ENST00000601091 NAIF1Q69YI7 327 aaPredicted RBP11.84□□□□□ -0.51
LIG1-220ENST00000601091 KLHL10Q6JEL2 608 aa11.84□□□□□ -0.51
LIG1-220ENST00000601091 TMCO3Q6UWJ1 677 aa11.84□□□□□ -0.51
LIG1-220ENST00000601091 TDRD7Q8NHU6 1098 aaKnown RBP11.84□□□□□ -0.51
LIG1-220ENST00000601091 DDX17Q92841 729 aaKnown RBP11.84□□□□□ -0.51
LIG1-220ENST00000601091 CEMIPQ8WUJ3 1361 aa11.84□□□□□ -0.51
LIG1-220ENST00000601091 TUBB4AP04350 444 aa11.84□□□□□ -0.51
LIG1-220ENST00000601091 ABL2P42684 1182 aa11.84□□□□□ -0.51
LIG1-220ENST00000601091 WTAPQ15007 396 aa11.84□□□□□ -0.51
LIG1-220ENST00000601091 KANK3Q6NY19 840 aa11.84□□□□□ -0.51
LIG1-220ENST00000601091 IQCA1Q86XH1 822 aa11.84□□□□□ -0.51
LIG1-220ENST00000601091 SDR16C5Q8N3Y7 309 aa11.84□□□□□ -0.51
LIG1-220ENST00000601091 ANGEL1Q9UNK9 670 aaKnown RBP11.84□□□□□ -0.51
LIG1-220ENST00000601091 AXIN2Q9Y2T1 843 aa11.84□□□□□ -0.51
LIG1-220ENST00000601091 SLU7O95391 586 aaKnown RBP11.83□□□□□ -0.52
LIG1-220ENST00000601091 YEATS4O95619 227 aa11.83□□□□□ -0.52
LIG1-220ENST00000601091 PDIA3P30101 505 aaKnown RBP11.83□□□□□ -0.52
LIG1-220ENST00000601091 ARID5BQ14865 1188 aa11.83□□□□□ -0.52
LIG1-220ENST00000601091 TTC31Q49AM3 519 aaPredicted RBP11.83□□□□□ -0.52
LIG1-220ENST00000601091 LRRC24Q50LG9 513 aa11.83□□□□□ -0.52
LIG1-220ENST00000601091 ZMYM1Q5SVZ6 1142 aa11.83□□□□□ -0.52
LIG1-220ENST00000601091 CCDC70Q6NSX1 233 aa11.83□□□□□ -0.52
LIG1-220ENST00000601091 NSUN7Q8NE18 718 aaKnown RBP11.83□□□□□ -0.52
LIG1-220ENST00000601091 RCOR1Q9UKL0 485 aa11.83□□□□□ -0.52
LIG1-220ENST00000601091 ZNF202O95125 648 aa11.83□□□□□ -0.52
LIG1-220ENST00000601091 NAT2P11245 290 aa11.83□□□□□ -0.52
LIG1-220ENST00000601091 RXRAP19793 462 aa11.83□□□□□ -0.52
LIG1-220ENST00000601091 ITSN1Q15811 1721 aa11.83□□□□□ -0.52
LIG1-220ENST00000601091 CEP170BQ9Y4F5 1589 aaPredicted RBP11.83□□□□□ -0.52
LIG1-220ENST00000601091 EXOC5O00471 708 aa11.83□□□□□ -0.52
LIG1-220ENST00000601091 IRS4O14654 1257 aaPredicted RBP11.83□□□□□ -0.52
LIG1-220ENST00000601091 ZAP70P43403 619 aa11.83□□□□□ -0.52
LIG1-220ENST00000601091 ZNF232Q9UNY5 417 aa11.83□□□□□ -0.52
LIG1-220ENST00000601091 ANKRD26Q9UPS8 1709 aa11.83□□□□□ -0.52
LIG1-220ENST00000601091 ERVV-2B6SEH9 535 aa11.82□□□□□ -0.52
LIG1-220ENST00000601091 RANBP6O60518 1105 aaKnown RBP11.82□□□□□ -0.52
LIG1-220ENST00000601091 RTN1Q16799 776 aa11.82□□□□□ -0.52
LIG1-220ENST00000601091 FEZ1Q99689 392 aa11.82□□□□□ -0.52
LIG1-220ENST00000601091 KCNF1Q9H3M0 494 aa11.82□□□□□ -0.52
LIG1-220ENST00000601091 RESTQ13127 1097 aa11.82□□□□□ -0.52
LIG1-220ENST00000601091 TCIRG1Q13488 830 aa11.82□□□□□ -0.52
LIG1-220ENST00000601091 HSP90B2PQ58FF3 399 aa11.82□□□□□ -0.52
LIG1-220ENST00000601091 CAVIN4Q5BKX8 364 aa11.82□□□□□ -0.52
LIG1-220ENST00000601091 MRFAP1Q9Y605 127 aa11.82□□□□□ -0.52
LIG1-220ENST00000601091 MYO5BQ9ULV0 1848 aa11.82□□□□□ -0.52
LIG1-220ENST00000601091 GOLGA6L9A6NEM1 432 aa11.82□□□□□ -0.52
LIG1-220ENST00000601091 TSGA10IPQ3SY00 556 aa11.82□□□□□ -0.52
LIG1-220ENST00000601091 MYSM1Q5VVJ2 828 aa11.82□□□□□ -0.52
LIG1-220ENST00000601091 HELBQ8NG08 1087 aaPredicted RBP11.82□□□□□ -0.52
LIG1-220ENST00000601091 UHMK1Q8TAS1 419 aaKnown RBP11.82□□□□□ -0.52
LIG1-220ENST00000601091 THOC1Q96FV9 657 aaKnown RBP11.82□□□□□ -0.52
LIG1-220ENST00000601091 TMEM87BQ96K49 555 aa11.82□□□□□ -0.52
LIG1-220ENST00000601091 ALDH8A1Q9H2A2 487 aaPredicted RBP11.82□□□□□ -0.52
LIG1-220ENST00000601091 KIAA1468Q9P260 1216 aa11.82□□□□□ -0.52
LIG1-220ENST00000601091 DNAI1Q9UI46 699 aa11.82□□□□□ -0.52
LIG1-220ENST00000601091 SHTN1A0MZ66 631 aa11.81□□□□□ -0.52
LIG1-220ENST00000601091 WDHD1O75717 1129 aaPredicted RBP11.81□□□□□ -0.52
LIG1-220ENST00000601091 FGAP02671 866 aa11.81□□□□□ -0.52
LIG1-220ENST00000601091 ITGA6P23229 1130 aa11.81□□□□□ -0.52
LIG1-220ENST00000601091 CATIPQ7Z7H3 387 aa11.81□□□□□ -0.52
LIG1-220ENST00000601091 MYLK4Q86YV6 388 aaPredicted RBP11.81□□□□□ -0.52
LIG1-220ENST00000601091 IMPACTQ9P2X3 320 aa11.81□□□□□ -0.52
LIG1-220ENST00000601091 MAGEC2Q9UBF1 373 aaPredicted RBP11.81□□□□□ -0.52
LIG1-220ENST00000601091 SH3TC1Q8TE82 1336 aa11.81□□□□□ -0.52
LIG1-220ENST00000601091 B4E1Z4 1266 aa11.81□□□□□ -0.52
LIG1-220ENST00000601091 CTCFLQ8NI51 663 aaPredicted RBP11.81□□□□□ -0.52
LIG1-220ENST00000601091 ACBD3Q9H3P7 528 aa11.81□□□□□ -0.52
LIG1-220ENST00000601091 OGFRQ9NZT2 677 aa11.81□□□□□ -0.52
LIG1-220ENST00000601091 PCDHA7Q9UN72 937 aa11.81□□□□□ -0.52
LIG1-220ENST00000601091 HNRNPH2P55795 449 aaKnown RBP11.81□□□□□ -0.52
LIG1-220ENST00000601091 MYL5Q02045 173 aa11.81□□□□□ -0.52
LIG1-220ENST00000601091 STIM1Q13586 685 aa11.81□□□□□ -0.52
LIG1-220ENST00000601091 ARHGAP29Q52LW3 1261 aa11.81□□□□□ -0.52
LIG1-220ENST00000601091 SLC4A4Q9Y6R1 1079 aa11.81□□□□□ -0.52
LIG1-220ENST00000601091 RICTORQ6R327 1708 aa11.81□□□□□ -0.52
LIG1-220ENST00000601091 IPO5O00410 1097 aaKnown RBP11.8□□□□□ -0.52
LIG1-220ENST00000601091 COQ9O75208 318 aa11.8□□□□□ -0.52
LIG1-220ENST00000601091 WWC2Q6AWC2 1192 aa11.8□□□□□ -0.52
LIG1-220ENST00000601091 CCDC189A1A4V9 331 aa11.8□□□□□ -0.52
LIG1-220ENST00000601091 POLR3GO15318 223 aaPredicted RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms