RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 DDTLA6NHG4 134 aaPredicted RBP18.48■□□□□ 0.55
LIG1-215ENST00000597901 MAP4K4O95819 1239 aaPredicted RBP18.48■□□□□ 0.55
LIG1-215ENST00000597901 CYP2E1P05181 493 aaPredicted RBP18.48■□□□□ 0.55
LIG1-215ENST00000597901 PPATQ06203 517 aa18.48■□□□□ 0.55
LIG1-215ENST00000597901 CRHR2Q13324 411 aa18.48■□□□□ 0.55
LIG1-215ENST00000597901 PPIL2Q13356 520 aa18.48■□□□□ 0.55
LIG1-215ENST00000597901 PICALMQ13492 652 aa18.48■□□□□ 0.55
LIG1-215ENST00000597901 ERC1Q8IUD2 1116 aa18.48■□□□□ 0.55
LIG1-215ENST00000597901 TLR7Q9NYK1 1049 aaKnown RBP18.48■□□□□ 0.55
LIG1-215ENST00000597901 PHF20L1A8MW92 1017 aa18.47■□□□□ 0.55
LIG1-215ENST00000597901 NPM3O75607 178 aaKnown RBP18.47■□□□□ 0.55
LIG1-215ENST00000597901 CETPP11597 493 aa18.47■□□□□ 0.55
LIG1-215ENST00000597901 ZAP70P43403 619 aa18.47■□□□□ 0.55
LIG1-215ENST00000597901 RGS19P49795 217 aa18.47■□□□□ 0.55
LIG1-215ENST00000597901 SNAPC2Q13487 334 aa18.47■□□□□ 0.55
LIG1-215ENST00000597901 HSP90AB4PQ58FF6 505 aa18.47■□□□□ 0.55
LIG1-215ENST00000597901 SIRT2Q8IXJ6 389 aa18.47■□□□□ 0.55
LIG1-215ENST00000597901 CHMP4BQ9H444 224 aaKnown RBP18.47■□□□□ 0.55
LIG1-215ENST00000597901 NAA16Q6N069 864 aaPredicted RBP18.46■□□□□ 0.55
LIG1-215ENST00000597901 FAM43AQ8N2R8 423 aa18.46■□□□□ 0.55
LIG1-215ENST00000597901 SLURP2P0DP57 97 aa18.45■□□□□ 0.54
LIG1-215ENST00000597901 PDE3AQ14432 1141 aa18.45■□□□□ 0.54
LIG1-215ENST00000597901 NOL9Q5SY16 702 aaKnown RBP18.45■□□□□ 0.54
LIG1-215ENST00000597901 C20orf194Q5TEA3 1177 aa18.45■□□□□ 0.54
LIG1-215ENST00000597901 AACSQ86V21 672 aa18.45■□□□□ 0.54
LIG1-215ENST00000597901 RHPN1Q8TCX5 695 aa18.45■□□□□ 0.54
LIG1-215ENST00000597901 ZFYVE28Q9HCC9 887 aa18.45■□□□□ 0.54
LIG1-215ENST00000597901 PIH1D3Q9NQM4 214 aaKnown RBP18.45■□□□□ 0.54
LIG1-215ENST00000597901 HPS5Q9UPZ3 1129 aa18.45■□□□□ 0.54
LIG1-215ENST00000597901 BTBD19C9JJ37 291 aa18.44■□□□□ 0.54
LIG1-215ENST00000597901 IGSF3O75054 1194 aa18.44■□□□□ 0.54
LIG1-215ENST00000597901 HMMRO75330 724 aa18.44■□□□□ 0.54
LIG1-215ENST00000597901 PPP4CP60510 307 aa18.44■□□□□ 0.54
LIG1-215ENST00000597901 SP3Q02447 781 aa18.44■□□□□ 0.54
LIG1-215ENST00000597901 TAF1CQ15572 869 aaPredicted RBP18.44■□□□□ 0.54
LIG1-215ENST00000597901 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.44■□□□□ 0.54
LIG1-215ENST00000597901 NOL10Q9BSC4 688 aaKnown RBP18.44■□□□□ 0.54
LIG1-215ENST00000597901 IL1RAPL2Q9NP60 686 aa18.44■□□□□ 0.54
LIG1-215ENST00000597901 RFX7Q2KHR2 1363 aa18.43■□□□□ 0.54
LIG1-215ENST00000597901 ATRNL1Q5VV63 1379 aa18.43■□□□□ 0.54
LIG1-215ENST00000597901 TBC1D12O60347 775 aa18.43■□□□□ 0.54
LIG1-215ENST00000597901 BAG3O95817 575 aa18.43■□□□□ 0.54
LIG1-215ENST00000597901 FBXO46Q6PJ61 603 aaPredicted RBP18.43■□□□□ 0.54
LIG1-215ENST00000597901 TEX11Q8IYF3 940 aa18.43■□□□□ 0.54
LIG1-215ENST00000597901 SH3RF3Q8TEJ3 882 aaPredicted RBP18.43■□□□□ 0.54
LIG1-215ENST00000597901 ERO1AQ96HE7 468 aa18.43■□□□□ 0.54
LIG1-215ENST00000597901 KCNH4Q9UQ05 1017 aa18.43■□□□□ 0.54
LIG1-215ENST00000597901 APBB1O00213 710 aa18.42■□□□□ 0.54
LIG1-215ENST00000597901 CTNND1O60716 968 aaKnown RBP18.42■□□□□ 0.54
LIG1-215ENST00000597901 ADGRA1Q86SQ6 560 aa18.42■□□□□ 0.54
LIG1-215ENST00000597901 SCYL3Q8IZE3 742 aa18.42■□□□□ 0.54
LIG1-215ENST00000597901 KIF1BPQ96EK5 621 aa18.42■□□□□ 0.54
LIG1-215ENST00000597901 ZCCHC17Q9NP64 241 aaKnown RBP18.42■□□□□ 0.54
LIG1-215ENST00000597901 AATFQ9NY61 560 aaKnown RBP eCLIP18.42■□□□□ 0.54
LIG1-215ENST00000597901 TRIM17Q9Y577 477 aa18.42■□□□□ 0.54
LIG1-215ENST00000597901 ZHX2Q9Y6X8 837 aa18.42■□□□□ 0.54
LIG1-215ENST00000597901 MYH13Q9UKX3 1938 aa18.42■□□□□ 0.54
LIG1-215ENST00000597901 CXCL11O14625 94 aa18.41■□□□□ 0.54
LIG1-215ENST00000597901 RAB11FIP3O75154 756 aa18.41■□□□□ 0.54
LIG1-215ENST00000597901 OTOP1Q7RTM1 612 aa18.41■□□□□ 0.54
LIG1-215ENST00000597901 CLASRPQ8N2M8 674 aaKnown RBP18.41■□□□□ 0.54
LIG1-215ENST00000597901 CD99L2Q8TCZ2 262 aa18.41■□□□□ 0.54
LIG1-215ENST00000597901 OSBPL5Q9H0X9 879 aaPredicted RBP18.41■□□□□ 0.54
LIG1-215ENST00000597901 PICK1Q9NRD5 415 aa18.41■□□□□ 0.54
LIG1-215ENST00000597901 NDUFB9Q9Y6M9 179 aa18.41■□□□□ 0.54
LIG1-215ENST00000597901 TLR2O60603 784 aa18.4■□□□□ 0.54
LIG1-215ENST00000597901 PLCG2P16885 1265 aa18.4■□□□□ 0.54
LIG1-215ENST00000597901 PTPRAP18433 802 aa18.4■□□□□ 0.54
LIG1-215ENST00000597901 CYP7A1P22680 504 aa18.4■□□□□ 0.54
LIG1-215ENST00000597901 MOGSQ13724 837 aa18.4■□□□□ 0.54
LIG1-215ENST00000597901 ANKRD23Q86SG2 305 aa18.4■□□□□ 0.54
LIG1-215ENST00000597901 ANTXR1Q9H6X2 564 aa18.4■□□□□ 0.54
LIG1-215ENST00000597901 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.4■□□□□ 0.54
LIG1-215ENST00000597901 MYH2Q9UKX2 1941 aa18.39■□□□□ 0.53
LIG1-215ENST00000597901 IDH1O75874 414 aaKnown RBP18.39■□□□□ 0.53
LIG1-215ENST00000597901 SOX10P56693 466 aa18.39■□□□□ 0.53
LIG1-215ENST00000597901 TGFBRAP1Q8WUH2 860 aa18.39■□□□□ 0.53
LIG1-215ENST00000597901 EFCC1Q9HA90 598 aa18.39■□□□□ 0.53
LIG1-215ENST00000597901 AFG3L2Q9Y4W6 797 aa18.39■□□□□ 0.53
LIG1-215ENST00000597901 FAM196BA6NMK8 535 aa18.38■□□□□ 0.53
LIG1-215ENST00000597901 DYNLL1P63167 89 aaKnown RBP18.38■□□□□ 0.53
LIG1-215ENST00000597901 CAP1Q01518 475 aa18.38■□□□□ 0.53
LIG1-215ENST00000597901 BCL11AQ9H165 835 aa18.38■□□□□ 0.53
LIG1-215ENST00000597901 PI4KBQ9UBF8 816 aa18.38■□□□□ 0.53
LIG1-215ENST00000597901 OTOFQ9HC10 1997 aa18.37■□□□□ 0.53
LIG1-215ENST00000597901 PDHXO00330 501 aa18.37■□□□□ 0.53
LIG1-215ENST00000597901 IFIT2P09913 472 aaKnown RBP18.37■□□□□ 0.53
LIG1-215ENST00000597901 MAP3K12Q12852 859 aa18.37■□□□□ 0.53
LIG1-215ENST00000597901 GPAT2Q6NUI2 795 aa18.37■□□□□ 0.53
LIG1-215ENST00000597901 FOXP4Q8IVH2 680 aaPredicted RBP18.37■□□□□ 0.53
LIG1-215ENST00000597901 MAPKAPK5Q8IW41 473 aa18.37■□□□□ 0.53
LIG1-215ENST00000597901 MAGEB6Q8N7X4 407 aa18.37■□□□□ 0.53
LIG1-215ENST00000597901 DHX36Q9H2U1 1008 aaKnown RBP18.37■□□□□ 0.53
LIG1-215ENST00000597901 PTPN22Q9Y2R2 807 aa18.37■□□□□ 0.53
LIG1-215ENST00000597901 RRP1BQ14684 758 aaKnown RBP18.36■□□□□ 0.53
LIG1-215ENST00000597901 ARHGEF6Q15052 776 aa18.36■□□□□ 0.53
LIG1-215ENST00000597901 C17orf99Q6UX52 265 aa18.36■□□□□ 0.53
LIG1-215ENST00000597901 FASTKD5Q7L8L6 764 aaKnown RBP18.36■□□□□ 0.53
LIG1-215ENST00000597901 A0A0G2JLL6 359 aaPredicted RBP18.35■□□□□ 0.53
LIG1-215ENST00000597901 TMED8Q6PL24 325 aaPredicted RBP18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms