RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP29.58■■■□□ 2.33
LSM4-202ENST00000593564 GNAI2P04899 355 aa29.57■■■□□ 2.32
LSM4-202ENST00000593564 ERICH6Q7L0X2 663 aa29.57■■■□□ 2.32
LSM4-202ENST00000593564 ZSWIM8A7E2V4 1837 aa29.57■■■□□ 2.32
LSM4-202ENST00000593564 DOCK2Q92608 1830 aa29.57■■■□□ 2.32
LSM4-202ENST00000593564 ZSCAN29Q8IWY8 852 aaPredicted RBP29.56■■■□□ 2.32
LSM4-202ENST00000593564 NEUROD6Q96NK8 337 aa29.56■■■□□ 2.32
LSM4-202ENST00000593564 DDX4Q9NQI0 724 aaKnown RBP29.56■■■□□ 2.32
LSM4-202ENST00000593564 PICK1Q9NRD5 415 aa29.56■■■□□ 2.32
LSM4-202ENST00000593564 GPR75-ASB3A0A0A6YYF3 556 aa29.55■■■□□ 2.32
LSM4-202ENST00000593564 DDTLA6NHG4 134 aaPredicted RBP29.55■■■□□ 2.32
LSM4-202ENST00000593564 MECOMQ03112 1051 aa29.55■■■□□ 2.32
LSM4-202ENST00000593564 SLC4A8Q2Y0W8 1093 aa29.55■■■□□ 2.32
LSM4-202ENST00000593564 GPAT2Q6NUI2 795 aa29.55■■■□□ 2.32
LSM4-202ENST00000593564 PARK7Q99497 189 aaKnown RBP29.55■■■□□ 2.32
LSM4-202ENST00000593564 HMG20BQ9P0W2 317 aa29.55■■■□□ 2.32
LSM4-202ENST00000593564 TNNQ9UQP3 1299 aa29.55■■■□□ 2.32
LSM4-202ENST00000593564 BCAR3O75815 825 aa29.54■■■□□ 2.32
LSM4-202ENST00000593564 PTPRAP18433 802 aa29.54■■■□□ 2.32
LSM4-202ENST00000593564 CTGFP29279 349 aa29.54■■■□□ 2.32
LSM4-202ENST00000593564 PSMC4P43686 418 aa29.54■■■□□ 2.32
LSM4-202ENST00000593564 SH3TC2Q8TF17 1288 aa29.54■■■□□ 2.32
LSM4-202ENST00000593564 FRAT1Q92837 279 aaPredicted RBP29.54■■■□□ 2.32
LSM4-202ENST00000593564 GCC1Q96CN9 775 aa29.54■■■□□ 2.32
LSM4-202ENST00000593564 ZHX2Q9Y6X8 837 aa29.54■■■□□ 2.32
LSM4-202ENST00000593564 RHBDL3P58872 404 aa29.53■■■□□ 2.32
LSM4-202ENST00000593564 PICALMQ13492 652 aa29.53■■■□□ 2.32
LSM4-202ENST00000593564 SPATA5Q8NB90 893 aa29.53■■■□□ 2.32
LSM4-202ENST00000593564 ZNF384Q8TF68 577 aa29.53■■■□□ 2.32
LSM4-202ENST00000593564 TRIM47Q96LD4 638 aa29.53■■■□□ 2.32
LSM4-202ENST00000593564 SRRDQ9UH36 339 aa29.53■■■□□ 2.32
LSM4-202ENST00000593564 A0A0G2JLL6 359 aaPredicted RBP29.52■■■□□ 2.32
LSM4-202ENST00000593564 PNMA6EA0A0J9YXQ4 647 aa29.52■■■□□ 2.32
LSM4-202ENST00000593564 NPM3O75607 178 aaKnown RBP29.52■■■□□ 2.32
LSM4-202ENST00000593564 GORABQ5T7V8 394 aa29.52■■■□□ 2.32
LSM4-202ENST00000593564 FASTKD5Q7L8L6 764 aaKnown RBP29.52■■■□□ 2.32
LSM4-202ENST00000593564 PRRT2Q7Z6L0 340 aaPredicted RBP29.52■■■□□ 2.32
LSM4-202ENST00000593564 PCDH10Q9P2E7 1040 aa29.52■■■□□ 2.32
LSM4-202ENST00000593564 AFG3L2Q9Y4W6 797 aa29.52■■■□□ 2.32
LSM4-202ENST00000593564 CTNND1O60716 968 aaKnown RBP29.51■■■□□ 2.31
LSM4-202ENST00000593564 HOXD10P28358 340 aa29.51■■■□□ 2.31
LSM4-202ENST00000593564 ARID4AP29374 1257 aaPredicted RBP29.51■■■□□ 2.31
LSM4-202ENST00000593564 G3BP1Q13283 466 aaKnown RBP eCLIP29.51■■■□□ 2.31
LSM4-202ENST00000593564 PI16Q6UXB8 463 aa29.51■■■□□ 2.31
LSM4-202ENST00000593564 CLUAP1Q96AJ1 413 aa29.51■■■□□ 2.31
LSM4-202ENST00000593564 ECM2O94769 699 aaPredicted RBP29.5■■■□□ 2.31
LSM4-202ENST00000593564 MAP4K4O95819 1239 aaPredicted RBP29.5■■■□□ 2.31
LSM4-202ENST00000593564 BCRP11274 1271 aa29.5■■■□□ 2.31
LSM4-202ENST00000593564 OSBPP22059 807 aa29.5■■■□□ 2.31
LSM4-202ENST00000593564 GSTO1P78417 241 aa29.5■■■□□ 2.31
LSM4-202ENST00000593564 NSUN4Q96CB9 384 aaKnown RBP29.5■■■□□ 2.31
LSM4-202ENST00000593564 FMNL1O95466 1100 aaPredicted RBP29.49■■■□□ 2.31
LSM4-202ENST00000593564 MYCP01106 439 aaPredicted RBP29.49■■■□□ 2.31
LSM4-202ENST00000593564 LDHCP07864 332 aa29.49■■■□□ 2.31
LSM4-202ENST00000593564 SLURP2P0DP57 97 aa29.49■■■□□ 2.31
LSM4-202ENST00000593564 CYP2C8P10632 490 aa29.49■■■□□ 2.31
LSM4-202ENST00000593564 TBC1D12O60347 775 aa29.48■■■□□ 2.31
LSM4-202ENST00000593564 TBC1D9Q6ZT07 1266 aa29.48■■■□□ 2.31
LSM4-202ENST00000593564 SLC45A1Q9Y2W3 748 aa29.48■■■□□ 2.31
LSM4-202ENST00000593564 UQCRFS1P1P0C7P4 283 aa29.47■■■□□ 2.31
LSM4-202ENST00000593564 TMEM57Q8N5G2 664 aa29.47■■■□□ 2.31
LSM4-202ENST00000593564 MYPNQ86TC9 1320 aa29.46■■■□□ 2.31
LSM4-202ENST00000593564 MCAMP43121 646 aa29.46■■■□□ 2.31
LSM4-202ENST00000593564 ZKSCAN2Q63HK3 967 aa29.46■■■□□ 2.31
LSM4-202ENST00000593564 RAET1EQ8TD07 263 aa29.46■■■□□ 2.31
LSM4-202ENST00000593564 RAI14Q9P0K7 980 aa29.46■■■□□ 2.31
LSM4-202ENST00000593564 DOCK1Q14185 1865 aa29.45■■■□□ 2.31
LSM4-202ENST00000593564 COL2A1P02458 1487 aaPredicted RBP29.45■■■□□ 2.31
LSM4-202ENST00000593564 FCGRTP55899 365 aa29.45■■■□□ 2.31
LSM4-202ENST00000593564 GADL1Q6ZQY3 521 aa29.45■■■□□ 2.31
LSM4-202ENST00000593564 TRIM75PA6NK02 468 aa29.44■■■□□ 2.3
LSM4-202ENST00000593564 GRK4P32298 578 aa29.44■■■□□ 2.3
LSM4-202ENST00000593564 POLA2Q14181 598 aa29.44■■■□□ 2.3
LSM4-202ENST00000593564 GPR108Q9NPR9 543 aa29.44■■■□□ 2.3
LSM4-202ENST00000593564 OSBPL5Q9H0X9 879 aaPredicted RBP29.43■■■□□ 2.3
LSM4-202ENST00000593564 XPO5Q9HAV4 1204 aaKnown RBP eCLIP29.43■■■□□ 2.3
LSM4-202ENST00000593564 MTFR1Q15390 333 aa29.42■■■□□ 2.3
LSM4-202ENST00000593564 LRP2BPQ9P2M1 347 aa29.42■■■□□ 2.3
LSM4-202ENST00000593564 FRMD4AQ9P2Q2 1039 aaPredicted RBP29.42■■■□□ 2.3
LSM4-202ENST00000593564 PHIPQ8WWQ0 1821 aa29.42■■■□□ 2.3
LSM4-202ENST00000593564 PTPRFP10586 1907 aa29.41■■■□□ 2.3
LSM4-202ENST00000593564 PRKCZQ05513 592 aa29.41■■■□□ 2.3
LSM4-202ENST00000593564 HABP4Q5JVS0 413 aaKnown RBP29.41■■■□□ 2.3
LSM4-202ENST00000593564 SSH3Q8TE77 659 aa29.41■■■□□ 2.3
LSM4-202ENST00000593564 AGTPBP1Q9UPW5 1226 aa29.41■■■□□ 2.3
LSM4-202ENST00000593564 FAM196BA6NMK8 535 aa29.4■■■□□ 2.3
LSM4-202ENST00000593564 TNNI3KQ59H18 835 aa29.4■■■□□ 2.3
LSM4-202ENST00000593564 CCDC84Q86UT8 332 aaPredicted RBP29.4■■■□□ 2.3
LSM4-202ENST00000593564 TEX11Q8IYF3 940 aa29.4■■■□□ 2.3
LSM4-202ENST00000593564 FPGT-TNNI3KV9GXZ4 949 aa29.4■■■□□ 2.3
LSM4-202ENST00000593564 ATP8B2P98198 1209 aa29.39■■■□□ 2.3
LSM4-202ENST00000593564 SMCR8Q8TEV9 937 aaPredicted RBP29.39■■■□□ 2.3
LSM4-202ENST00000593564 CCDC158Q5M9N0 1113 aa29.38■■■□□ 2.29
LSM4-202ENST00000593564 TTC39AQ5SRH9 613 aa29.38■■■□□ 2.29
LSM4-202ENST00000593564 SLAIN1Q8ND83 568 aa29.38■■■□□ 2.29
LSM4-202ENST00000593564 NKX2-3Q8TAU0 364 aa29.38■■■□□ 2.29
LSM4-202ENST00000593564 SHISA4Q96DD7 197 aa29.38■■■□□ 2.29
LSM4-202ENST00000593564 DBNDD2Q9BQY9 259 aa29.38■■■□□ 2.29
LSM4-202ENST00000593564 NOL10Q9BSC4 688 aaKnown RBP29.38■■■□□ 2.29
LSM4-202ENST00000593564 TBC1D2Q9BYX2 928 aa29.38■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms