RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	11.19	□□□□□ -0.62
DNMT1-223	ENST00000591239	ADGRA1	Q86SQ6	560 aa		11.19	□□□□□ -0.62
DNMT1-223	ENST00000591239	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	11.19	□□□□□ -0.62
DNMT1-223	ENST00000591239	WRNIP1	Q96S55	665 aa		11.19	□□□□□ -0.62
DNMT1-223	ENST00000591239	DNAJC2	Q99543	621 aa	Known RBP	11.19	□□□□□ -0.62
DNMT1-223	ENST00000591239	AATF	Q9NY61	560 aa	Known RBP eCLIP	11.19	□□□□□ -0.62
DNMT1-223	ENST00000591239	AK9	Q5TCS8	1911 aa		11.18	□□□□□ -0.62
DNMT1-223	ENST00000591239	GOLIM4	O00461	696 aa		11.18	□□□□□ -0.62
DNMT1-223	ENST00000591239	ZBTB48	P10074	688 aa	Predicted RBP	11.18	□□□□□ -0.62
DNMT1-223	ENST00000591239	PLCG2	P16885	1265 aa		11.18	□□□□□ -0.62
DNMT1-223	ENST00000591239	CYP7A1	P22680	504 aa		11.18	□□□□□ -0.62
DNMT1-223	ENST00000591239	TM4SF4	P48230	202 aa		11.18	□□□□□ -0.62
DNMT1-223	ENST00000591239	PPP4C	P60510	307 aa		11.18	□□□□□ -0.62
DNMT1-223	ENST00000591239	SH3BP5L	Q7L8J4	393 aa		11.18	□□□□□ -0.62
DNMT1-223	ENST00000591239	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	11.18	□□□□□ -0.62
DNMT1-223	ENST00000591239	TEX11	Q8IYF3	940 aa		11.18	□□□□□ -0.62
DNMT1-223	ENST00000591239	MAGEB6	Q8N7X4	407 aa		11.18	□□□□□ -0.62
DNMT1-223	ENST00000591239	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	11.18	□□□□□ -0.62
DNMT1-223	ENST00000591239	WNK4	Q96J92	1243 aa		11.18	□□□□□ -0.62
DNMT1-223	ENST00000591239	ZNF341	Q9BYN7	854 aa		11.18	□□□□□ -0.62
DNMT1-223	ENST00000591239	BOLA2	Q9H3K6	86 aa		11.18	□□□□□ -0.62
DNMT1-223	ENST00000591239	ELP3	Q9H9T3	547 aa		11.18	□□□□□ -0.62
DNMT1-223	ENST00000591239	PRDM10	Q9NQV6	1147 aa		11.18	□□□□□ -0.62
DNMT1-223	ENST00000591239	TSKS	Q9UJT2	592 aa		11.18	□□□□□ -0.62
DNMT1-223	ENST00000591239	CSAD	Q9Y600	493 aa		11.18	□□□□□ -0.62
DNMT1-223	ENST00000591239	DDTL	A6NHG4	134 aa	Predicted RBP	11.17	□□□□□ -0.62
DNMT1-223	ENST00000591239	TRPA1	O75762	1119 aa		11.17	□□□□□ -0.62
DNMT1-223	ENST00000591239	GJA5	P36382	358 aa		11.17	□□□□□ -0.62
DNMT1-223	ENST00000591239	SREBF2	Q12772	1141 aa		11.17	□□□□□ -0.62
DNMT1-223	ENST00000591239	HDAC1	Q13547	482 aa	Predicted RBP	11.17	□□□□□ -0.62
DNMT1-223	ENST00000591239	TMED8	Q6PL24	325 aa	Predicted RBP	11.17	□□□□□ -0.62
DNMT1-223	ENST00000591239	EXOC6	Q8TAG9	804 aa		11.17	□□□□□ -0.62
DNMT1-223	ENST00000591239	ZKSCAN4	Q969J2	545 aa	Predicted RBP	11.17	□□□□□ -0.62
DNMT1-223	ENST00000591239	OPTN	Q96CV9	577 aa		11.17	□□□□□ -0.62
DNMT1-223	ENST00000591239	EDC3	Q96F86	508 aa	Known RBP	11.17	□□□□□ -0.62
DNMT1-223	ENST00000591239	HAUS7	Q99871	368 aa		11.17	□□□□□ -0.62
DNMT1-223	ENST00000591239	PAG1	Q9NWQ8	432 aa		11.17	□□□□□ -0.62
DNMT1-223	ENST00000591239	RNF186	Q9NXI6	227 aa		11.17	□□□□□ -0.62
DNMT1-223	ENST00000591239	SAGE1	Q9NXZ1	904 aa		11.17	□□□□□ -0.62
DNMT1-223	ENST00000591239	ZNF112	Q9UJU3	913 aa		11.17	□□□□□ -0.62
DNMT1-223	ENST00000591239	MAST2	Q6P0Q8	1798 aa		11.17	□□□□□ -0.62
DNMT1-223	ENST00000591239	OTOF	Q9HC10	1997 aa		11.17	□□□□□ -0.62
DNMT1-223	ENST00000591239	ATRNL1	Q5VV63	1379 aa		11.16	□□□□□ -0.62
DNMT1-223	ENST00000591239	MANSC4	A6NHS7	340 aa	Predicted RBP	11.16	□□□□□ -0.62
DNMT1-223	ENST00000591239	INPP5B	P32019	993 aa		11.16	□□□□□ -0.62
DNMT1-223	ENST00000591239	INHBE	P58166	350 aa		11.16	□□□□□ -0.62
DNMT1-223	ENST00000591239	DYNLL1	P63167	89 aa	Known RBP	11.16	□□□□□ -0.62
DNMT1-223	ENST00000591239	MAP3K10	Q02779	954 aa		11.16	□□□□□ -0.62
DNMT1-223	ENST00000591239	SLC9C2	Q5TAH2	1124 aa		11.16	□□□□□ -0.62
DNMT1-223	ENST00000591239	CERS3	Q8IU89	383 aa		11.16	□□□□□ -0.62
DNMT1-223	ENST00000591239	MIGA1	Q8NAN2	632 aa		11.16	□□□□□ -0.62
DNMT1-223	ENST00000591239	TGFBRAP1	Q8WUH2	860 aa		11.16	□□□□□ -0.62
DNMT1-223	ENST00000591239	GPATCH3	Q96I76	525 aa		11.16	□□□□□ -0.62
DNMT1-223	ENST00000591239	OSBPL5	Q9H0X9	879 aa	Predicted RBP	11.16	□□□□□ -0.62
DNMT1-223	ENST00000591239	ECHDC1	Q9NTX5	307 aa		11.16	□□□□□ -0.62
DNMT1-223	ENST00000591239	SNCAIP	Q9Y6H5	919 aa		11.16	□□□□□ -0.62
DNMT1-223	ENST00000591239	DOCK2	Q92608	1830 aa		11.16	□□□□□ -0.62
DNMT1-223	ENST00000591239	PHF20L1	A8MW92	1017 aa		11.15	□□□□□ -0.62
DNMT1-223	ENST00000591239	PDE6A	P16499	860 aa		11.15	□□□□□ -0.62
DNMT1-223	ENST00000591239	ERO1B	Q86YB8	467 aa		11.15	□□□□□ -0.62
DNMT1-223	ENST00000591239	GCC1	Q96CN9	775 aa		11.15	□□□□□ -0.62
DNMT1-223	ENST00000591239	OTUD5	Q96G74	571 aa		11.15	□□□□□ -0.62
DNMT1-223	ENST00000591239	FLT1	P17948	1338 aa		11.14	□□□□□ -0.63
DNMT1-223	ENST00000591239	COL2A1	P02458	1487 aa	Predicted RBP	11.14	□□□□□ -0.63
DNMT1-223	ENST00000591239	TCRBV5S4A2T	A0A5A2	114 aa		11.14	□□□□□ -0.63
DNMT1-223	ENST00000591239	SPDYE5	A6NIY4	337 aa		11.14	□□□□□ -0.63
DNMT1-223	ENST00000591239	TBC1D12	O60347	775 aa		11.14	□□□□□ -0.63
DNMT1-223	ENST00000591239	SLURP2	P0DP57	97 aa		11.14	□□□□□ -0.63
DNMT1-223	ENST00000591239	ANKRD45	Q5TZF3	282 aa		11.14	□□□□□ -0.63
DNMT1-223	ENST00000591239	TSHZ3	Q63HK5	1081 aa		11.14	□□□□□ -0.63
DNMT1-223	ENST00000591239	IFNL1	Q8IU54	200 aa		11.14	□□□□□ -0.63
DNMT1-223	ENST00000591239	MAPKAPK5	Q8IW41	473 aa		11.14	□□□□□ -0.63
DNMT1-223	ENST00000591239	MS4A4A	Q96JQ5	239 aa		11.14	□□□□□ -0.63
DNMT1-223	ENST00000591239	DHX36	Q9H2U1	1008 aa	Known RBP	11.14	□□□□□ -0.63
DNMT1-223	ENST00000591239	RWDD1	Q9H446	243 aa	Predicted RBP	11.14	□□□□□ -0.63
DNMT1-223	ENST00000591239	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.14	□□□□□ -0.63
DNMT1-223	ENST00000591239	ZNF532	Q9HCE3	1301 aa		11.13	□□□□□ -0.63
DNMT1-223	ENST00000591239	MAGEB6P1	A0A0J9YX57	407 aa		11.13	□□□□□ -0.63
DNMT1-223	ENST00000591239	TESPA1	A2RU30	521 aa	Predicted RBP	11.13	□□□□□ -0.63
DNMT1-223	ENST00000591239	TBC1D8	O95759	1140 aa		11.13	□□□□□ -0.63
DNMT1-223	ENST00000591239	ADD2	P35612	726 aa		11.13	□□□□□ -0.63
DNMT1-223	ENST00000591239	GTF2A2	P52657	109 aa		11.13	□□□□□ -0.63
DNMT1-223	ENST00000591239	NOL9	Q5SY16	702 aa	Known RBP	11.13	□□□□□ -0.63
DNMT1-223	ENST00000591239	OTUD7A	Q8TE49	926 aa	Predicted RBP	11.13	□□□□□ -0.63
DNMT1-223	ENST00000591239	PTPN18	Q99952	460 aa		11.13	□□□□□ -0.63
DNMT1-223	ENST00000591239	RIOK1	Q9BRS2	568 aa	Known RBP	11.13	□□□□□ -0.63
DNMT1-223	ENST00000591239	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	11.13	□□□□□ -0.63
DNMT1-223	ENST00000591239	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	11.13	□□□□□ -0.63
DNMT1-223	ENST00000591239	PI4KB	Q9UBF8	816 aa		11.13	□□□□□ -0.63
DNMT1-223	ENST00000591239	PALD1	Q9ULE6	856 aa		11.13	□□□□□ -0.63
DNMT1-223	ENST00000591239	TTC41P	Q6P2S7	1318 aa		11.12	□□□□□ -0.63
DNMT1-223	ENST00000591239	FAM196B	A6NMK8	535 aa		11.12	□□□□□ -0.63
DNMT1-223	ENST00000591239	IGF2BP3	O00425	579 aa	Known RBP eCLIP	11.12	□□□□□ -0.63
DNMT1-223	ENST00000591239	IRF6	O14896	467 aa		11.12	□□□□□ -0.63
DNMT1-223	ENST00000591239	CTNND1	O60716	968 aa	Known RBP	11.12	□□□□□ -0.63
DNMT1-223	ENST00000591239	ALDH1A1	P00352	501 aa		11.12	□□□□□ -0.63
DNMT1-223	ENST00000591239	USP5	P45974	858 aa		11.12	□□□□□ -0.63
DNMT1-223	ENST00000591239	PPAT	Q06203	517 aa		11.12	□□□□□ -0.63
DNMT1-223	ENST00000591239	PPIL2	Q13356	520 aa		11.12	□□□□□ -0.63
DNMT1-223	ENST00000591239	SLFNL1	Q499Z3	407 aa		11.12	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms