RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 CDK5RAP2Q96SN8 1893 aa24.49■■□□□ 1.51
SS18-218ENST00000581021 TEX11Q8IYF3 940 aa24.49■■□□□ 1.51
SS18-218ENST00000581021 MIGA1Q8NAN2 632 aa24.49■■□□□ 1.51
SS18-218ENST00000581021 SLC10A4Q96EP9 437 aa24.49■■□□□ 1.51
SS18-218ENST00000581021 WRNIP1Q96S55 665 aa24.49■■□□□ 1.51
SS18-218ENST00000581021 UNCXA6NJT0 531 aa24.48■■□□□ 1.51
SS18-218ENST00000581021 IGSF3O75054 1194 aa24.48■■□□□ 1.51
SS18-218ENST00000581021 NPM3O75607 178 aaKnown RBP24.48■■□□□ 1.51
SS18-218ENST00000581021 CHGBP05060 677 aa24.48■■□□□ 1.51
SS18-218ENST00000581021 PDE6AP16499 860 aa24.48■■□□□ 1.51
SS18-218ENST00000581021 MAP3K9P80192 1104 aa24.48■■□□□ 1.51
SS18-218ENST00000581021 SLFNL1Q499Z3 407 aa24.48■■□□□ 1.51
SS18-218ENST00000581021 ECHDC1Q9NTX5 307 aa24.48■■□□□ 1.51
SS18-218ENST00000581021 PAG1Q9NWQ8 432 aa24.48■■□□□ 1.51
SS18-218ENST00000581021 SNCAIPQ9Y6H5 919 aa24.48■■□□□ 1.51
SS18-218ENST00000581021 LAMB1P07942 1786 aa24.47■■□□□ 1.51
SS18-218ENST00000581021 MAP4K4O95819 1239 aaPredicted RBP24.47■■□□□ 1.51
SS18-218ENST00000581021 INPP5BP32019 993 aa24.47■■□□□ 1.51
SS18-218ENST00000581021 CTCFP49711 727 aaPredicted RBP24.47■■□□□ 1.51
SS18-218ENST00000581021 MAP3K12Q12852 859 aa24.47■■□□□ 1.51
SS18-218ENST00000581021 AAMPQ13685 434 aa24.47■■□□□ 1.51
SS18-218ENST00000581021 ZKSCAN4Q969J2 545 aaPredicted RBP24.47■■□□□ 1.51
SS18-218ENST00000581021 FOCADQ5VW36 1801 aa24.47■■□□□ 1.51
SS18-218ENST00000581021 COL2A1P02458 1487 aaPredicted RBP24.46■■□□□ 1.51
SS18-218ENST00000581021 TCRBV5S4A2TA0A5A2 114 aa24.46■■□□□ 1.51
SS18-218ENST00000581021 LBX1P52954 281 aa24.46■■□□□ 1.51
SS18-218ENST00000581021 TTF1Q15361 905 aaPredicted RBP24.46■■□□□ 1.51
SS18-218ENST00000581021 COL13A1Q5TAT6 717 aaPredicted RBP24.46■■□□□ 1.51
SS18-218ENST00000581021 DCAF15Q66K64 600 aa24.46■■□□□ 1.51
SS18-218ENST00000581021 ZNF341Q9BYN7 854 aa24.46■■□□□ 1.51
SS18-218ENST00000581021 OSBPL5Q9H0X9 879 aaPredicted RBP24.46■■□□□ 1.51
SS18-218ENST00000581021 ZNF112Q9UJU3 913 aa24.46■■□□□ 1.51
SS18-218ENST00000581021 SIPA1L1O43166 1804 aa24.45■■□□□ 1.5
SS18-218ENST00000581021 FLT1P17948 1338 aa24.45■■□□□ 1.5
SS18-218ENST00000581021 SALL3Q9BXA9 1300 aa24.45■■□□□ 1.5
SS18-218ENST00000581021 BAG3O95817 575 aa24.45■■□□□ 1.5
SS18-218ENST00000581021 IGHDP01880 384 aa24.45■■□□□ 1.5
SS18-218ENST00000581021 SLC9C2Q5TAH2 1124 aa24.45■■□□□ 1.5
SS18-218ENST00000581021 ZSCAN29Q8IWY8 852 aaPredicted RBP24.45■■□□□ 1.5
SS18-218ENST00000581021 OPTNQ96CV9 577 aa24.45■■□□□ 1.5
SS18-218ENST00000581021 HOOK2Q96ED9 719 aa24.45■■□□□ 1.5
SS18-218ENST00000581021 RIOK1Q9BRS2 568 aaKnown RBP24.45■■□□□ 1.5
SS18-218ENST00000581021 RNF186Q9NXI6 227 aa24.45■■□□□ 1.5
SS18-218ENST00000581021 AK9Q5TCS8 1911 aa24.45■■□□□ 1.5
SS18-218ENST00000581021 PHF20L1A8MW92 1017 aa24.44■■□□□ 1.5
SS18-218ENST00000581021 ZBTB48P10074 688 aaPredicted RBP24.44■■□□□ 1.5
SS18-218ENST00000581021 MAP3K10Q02779 954 aa24.44■■□□□ 1.5
SS18-218ENST00000581021 MAPKAPK5Q8IW41 473 aa24.44■■□□□ 1.5
SS18-218ENST00000581021 TGFBRAP1Q8WUH2 860 aa24.44■■□□□ 1.5
SS18-218ENST00000581021 NOL10Q9BSC4 688 aaKnown RBP24.44■■□□□ 1.5
SS18-218ENST00000581021 BEGAINQ9BUH8 593 aa24.44■■□□□ 1.5
SS18-218ENST00000581021 ZNF532Q9HCE3 1301 aa24.43■■□□□ 1.5
SS18-218ENST00000581021 FAM196BA6NMK8 535 aa24.43■■□□□ 1.5
SS18-218ENST00000581021 CSADQ9Y600 493 aa24.43■■□□□ 1.5
SS18-218ENST00000581021 SPDYE5A6NIY4 337 aa24.42■■□□□ 1.5
SS18-218ENST00000581021 PLCG2P16885 1265 aa24.42■■□□□ 1.5
SS18-218ENST00000581021 TM4SF4P48230 202 aa24.42■■□□□ 1.5
SS18-218ENST00000581021 ANKRD45Q5TZF3 282 aa24.42■■□□□ 1.5
SS18-218ENST00000581021 PI4K2BQ8TCG2 481 aa24.42■■□□□ 1.5
SS18-218ENST00000581021 GCC1Q96CN9 775 aa24.42■■□□□ 1.5
SS18-218ENST00000581021 CA12O43570 354 aa24.41■■□□□ 1.5
SS18-218ENST00000581021 TRPA1O75762 1119 aa24.41■■□□□ 1.5
SS18-218ENST00000581021 SMC5Q8IY18 1101 aa24.41■■□□□ 1.5
SS18-218ENST00000581021 OTUD5Q96G74 571 aa24.41■■□□□ 1.5
SS18-218ENST00000581021 DDX60LQ5H9U9 1706 aaKnown RBP24.41■■□□□ 1.5
SS18-218ENST00000581021 ADD2P35612 726 aa24.4■■□□□ 1.5
SS18-218ENST00000581021 TMED8Q6PL24 325 aaPredicted RBP24.4■■□□□ 1.5
SS18-218ENST00000581021 MS4A4AQ96JQ5 239 aa24.4■■□□□ 1.5
SS18-218ENST00000581021 SAGE1Q9NXZ1 904 aa24.4■■□□□ 1.5
SS18-218ENST00000581021 IGF2BP3O00425 579 aaKnown RBP eCLIP24.39■■□□□ 1.49
SS18-218ENST00000581021 RRP1BQ14684 758 aaKnown RBP24.39■■□□□ 1.49
SS18-218ENST00000581021 NOL9Q5SY16 702 aaKnown RBP24.39■■□□□ 1.49
SS18-218ENST00000581021 REM2Q8IYK8 340 aaPredicted RBP24.39■■□□□ 1.49
SS18-218ENST00000581021 GPATCH3Q96I76 525 aa24.39■■□□□ 1.49
SS18-218ENST00000581021 PRDM10Q9NQV6 1147 aa24.39■■□□□ 1.49
SS18-218ENST00000581021 SAP30BPQ9UHR5 308 aaKnown RBP24.39■■□□□ 1.49
SS18-218ENST00000581021 TTC41PQ6P2S7 1318 aa24.38■■□□□ 1.49
SS18-218ENST00000581021 MYH7P12883 1935 aa24.38■■□□□ 1.49
SS18-218ENST00000581021 MAGEB6P1A0A0J9YX57 407 aa24.38■■□□□ 1.49
SS18-218ENST00000581021 MANSC4A6NHS7 340 aaPredicted RBP24.38■■□□□ 1.49
SS18-218ENST00000581021 MX1P20591 662 aa24.38■■□□□ 1.49
SS18-218ENST00000581021 SREBF2Q12772 1141 aa24.38■■□□□ 1.49
SS18-218ENST00000581021 ERO1BQ86YB8 467 aa24.38■■□□□ 1.49
SS18-218ENST00000581021 LCORLQ8N3X6 602 aa24.38■■□□□ 1.49
SS18-218ENST00000581021 PTPN18Q99952 460 aa24.38■■□□□ 1.49
SS18-218ENST00000581021 DNAJC18Q9H819 358 aa24.38■■□□□ 1.49
SS18-218ENST00000581021 FRMD4AQ9P2Q2 1039 aaPredicted RBP24.38■■□□□ 1.49
SS18-218ENST00000581021 PALD1Q9ULE6 856 aa24.38■■□□□ 1.49
SS18-218ENST00000581021 TBC1D12O60347 775 aa24.37■■□□□ 1.49
SS18-218ENST00000581021 SLC4A8Q2Y0W8 1093 aa24.37■■□□□ 1.49
SS18-218ENST00000581021 BRI3BPQ8WY22 251 aa24.37■■□□□ 1.49
SS18-218ENST00000581021 R3HDMLQ9H3Y0 253 aa24.37■■□□□ 1.49
SS18-218ENST00000581021 RWDD1Q9H446 243 aaPredicted RBP24.37■■□□□ 1.49
SS18-218ENST00000581021 TESPA1A2RU30 521 aaPredicted RBP24.36■■□□□ 1.49
SS18-218ENST00000581021 IRF6O14896 467 aa24.36■■□□□ 1.49
SS18-218ENST00000581021 IFNL1Q8IU54 200 aa24.36■■□□□ 1.49
SS18-218ENST00000581021 LNPKQ9C0E8 428 aa24.36■■□□□ 1.49
SS18-218ENST00000581021 DOCK1Q14185 1865 aa24.35■■□□□ 1.49
SS18-218ENST00000581021 EVX2Q03828 476 aa24.35■■□□□ 1.49
SS18-218ENST00000581021 PPIL2Q13356 520 aa24.35■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms