RNA–Protein interactions for RNA: ENST00000568373.5

SMPD3-211, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,073 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-211ENST00000568373 NTRK3Q16288 839 aa21.14■□□□□ 0.98
SMPD3-211ENST00000568373 MAP3K11Q16584 847 aa21.14■□□□□ 0.98
SMPD3-211ENST00000568373 UVSSAQ2YD98 709 aa21.14■□□□□ 0.98
SMPD3-211ENST00000568373 CCDC144CPQ8IYA2 1237 aa21.14■□□□□ 0.98
SMPD3-211ENST00000568373 MYL10Q9BUA6 226 aa21.14■□□□□ 0.98
SMPD3-211ENST00000568373 FAM217BQ9NTX9 383 aaPredicted RBP21.14■□□□□ 0.98
SMPD3-211ENST00000568373 CCDC88AQ3V6T2 1871 aa21.14■□□□□ 0.97
SMPD3-211ENST00000568373 XDHP47989 1333 aa21.14■□□□□ 0.97
SMPD3-211ENST00000568373 ERICH2A1L162 156 aa21.14■□□□□ 0.97
SMPD3-211ENST00000568373 PRDX5P30044 214 aa21.14■□□□□ 0.97
SMPD3-211ENST00000568373 WTAPQ15007 396 aa21.14■□□□□ 0.97
SMPD3-211ENST00000568373 CRY2Q49AN0 593 aa21.14■□□□□ 0.97
SMPD3-211ENST00000568373 SYNE3Q6ZMZ3 975 aa21.14■□□□□ 0.97
SMPD3-211ENST00000568373 BRAPQ7Z569 592 aa21.14■□□□□ 0.97
SMPD3-211ENST00000568373 STK11IPQ8N1F8 1099 aa21.14■□□□□ 0.97
SMPD3-211ENST00000568373 RPGRQ92834 1020 aaKnown RBP21.14■□□□□ 0.97
SMPD3-211ENST00000568373 ST5P78524 1137 aa21.13■□□□□ 0.97
SMPD3-211ENST00000568373 TMTC2Q8N394 836 aa21.13■□□□□ 0.97
SMPD3-211ENST00000568373 ZKSCAN3Q9BRR0 538 aa21.13■□□□□ 0.97
SMPD3-211ENST00000568373 GJB4Q9NTQ9 266 aa21.13■□□□□ 0.97
SMPD3-211ENST00000568373 NR1I2O75469 434 aa21.13■□□□□ 0.97
SMPD3-211ENST00000568373 SERPINB2P05120 415 aa21.13■□□□□ 0.97
SMPD3-211ENST00000568373 ESR2Q92731 530 aa21.13■□□□□ 0.97
SMPD3-211ENST00000568373 PHKBQ93100 1093 aa21.13■□□□□ 0.97
SMPD3-211ENST00000568373 ALG1Q9BT22 464 aa21.13■□□□□ 0.97
SMPD3-211ENST00000568373 TNMDQ9H2S6 317 aa21.13■□□□□ 0.97
SMPD3-211ENST00000568373 CLSTN2Q9H4D0 955 aa21.13■□□□□ 0.97
SMPD3-211ENST00000568373 CCDC192P0DO97 292 aa21.12■□□□□ 0.97
SMPD3-211ENST00000568373 IARSP41252 1262 aaKnown RBP21.12■□□□□ 0.97
SMPD3-211ENST00000568373 CAMK4Q16566 473 aa21.12■□□□□ 0.97
SMPD3-211ENST00000568373 SLC51AQ86UW1 340 aa21.12■□□□□ 0.97
SMPD3-211ENST00000568373 RTEL1Q9NZ71 1219 aa21.12■□□□□ 0.97
SMPD3-211ENST00000568373 STK36Q9NRP7 1315 aa21.11■□□□□ 0.97
SMPD3-211ENST00000568373 RANBP6O60518 1105 aaKnown RBP21.11■□□□□ 0.97
SMPD3-211ENST00000568373 KIF23Q02241 960 aaPredicted RBP21.11■□□□□ 0.97
SMPD3-211ENST00000568373 SPTY2D1Q68D10 685 aaPredicted RBP21.11■□□□□ 0.97
SMPD3-211ENST00000568373 UBAC1Q9BSL1 405 aa21.11■□□□□ 0.97
SMPD3-211ENST00000568373 ECM29Q5VYK3 1845 aa21.11■□□□□ 0.97
SMPD3-211ENST00000568373 DUOX1Q9NRD9 1551 aa21.11■□□□□ 0.97
SMPD3-211ENST00000568373 ESPNB1AK53 854 aa21.11■□□□□ 0.97
SMPD3-211ENST00000568373 PCP11498 1178 aaKnown RBP21.11■□□□□ 0.97
SMPD3-211ENST00000568373 RCAN1P53805 252 aa21.11■□□□□ 0.97
SMPD3-211ENST00000568373 RBM43Q6ZSC3 357 aaKnown RBP21.11■□□□□ 0.97
SMPD3-211ENST00000568373 AIFM3Q96NN9 605 aa21.11■□□□□ 0.97
SMPD3-211ENST00000568373 CRNKL1Q9BZJ0 848 aaKnown RBP21.11■□□□□ 0.97
SMPD3-211ENST00000568373 AATFQ9NY61 560 aaKnown RBP eCLIP21.11■□□□□ 0.97
SMPD3-211ENST00000568373 SMIM22K7EJ46 135 aa21.1■□□□□ 0.97
SMPD3-211ENST00000568373 POLR3DP05423 398 aaPredicted RBP21.1■□□□□ 0.97
SMPD3-211ENST00000568373 MYSM1Q5VVJ2 828 aa21.1■□□□□ 0.97
SMPD3-211ENST00000568373 CTR9Q6PD62 1173 aa21.1■□□□□ 0.97
SMPD3-211ENST00000568373 C15orf52Q6ZUT6 534 aaKnown RBP21.1■□□□□ 0.97
SMPD3-211ENST00000568373 KIAA1551Q9HCM1 1747 aa21.1■□□□□ 0.97
SMPD3-211ENST00000568373 KIF28PB7ZC32 967 aa21.09■□□□□ 0.97
SMPD3-211ENST00000568373 IGSF3O75054 1194 aa21.09■□□□□ 0.97
SMPD3-211ENST00000568373 FGRP09769 529 aa21.09■□□□□ 0.97
SMPD3-211ENST00000568373 IFNAR1P17181 557 aa21.09■□□□□ 0.97
SMPD3-211ENST00000568373 TDRD7Q8NHU6 1098 aaKnown RBP21.09■□□□□ 0.97
SMPD3-211ENST00000568373 WDR66Q8TBY9 1149 aa21.09■□□□□ 0.97
SMPD3-211ENST00000568373 POLR3EQ9NVU0 708 aa21.09■□□□□ 0.97
SMPD3-211ENST00000568373 JAG2Q9Y219 1238 aa21.09■□□□□ 0.97
SMPD3-211ENST00000568373 MYH2Q9UKX2 1941 aa21.09■□□□□ 0.97
SMPD3-211ENST00000568373 CYP2D7A0A087X1C5 515 aa21.09■□□□□ 0.97
SMPD3-211ENST00000568373 ME1P48163 572 aa21.09■□□□□ 0.97
SMPD3-211ENST00000568373 RTN1Q16799 776 aa21.09■□□□□ 0.97
SMPD3-211ENST00000568373 DZIP1Q86YF9 867 aaKnown RBP21.09■□□□□ 0.97
SMPD3-211ENST00000568373 USP17L12C9JPN9 530 aa21.08■□□□□ 0.97
SMPD3-211ENST00000568373 USP17L21D6R901 530 aa21.08■□□□□ 0.97
SMPD3-211ENST00000568373 FMNL1O95466 1100 aaPredicted RBP21.08■□□□□ 0.97
SMPD3-211ENST00000568373 SSRP1Q08945 709 aaKnown RBP21.08■□□□□ 0.97
SMPD3-211ENST00000568373 SEC23AQ15436 765 aa21.08■□□□□ 0.97
SMPD3-211ENST00000568373 TXNRD1Q16881 649 aa21.08■□□□□ 0.97
SMPD3-211ENST00000568373 HS1BP3Q53T59 392 aa21.08■□□□□ 0.97
SMPD3-211ENST00000568373 KRT40Q6A162 431 aa21.08■□□□□ 0.97
SMPD3-211ENST00000568373 ZNF804AQ7Z570 1209 aa21.08■□□□□ 0.97
SMPD3-211ENST00000568373 CCAR1Q8IX12 1150 aaKnown RBP21.08■□□□□ 0.97
SMPD3-211ENST00000568373 RBM17Q96I25 401 aaKnown RBP21.08■□□□□ 0.97
SMPD3-211ENST00000568373 DCP1AQ9NPI6 582 aaPredicted RBP21.08■□□□□ 0.97
SMPD3-211ENST00000568373 ATP8A2Q9NTI2 1148 aa21.08■□□□□ 0.97
SMPD3-211ENST00000568373 TNKSO95271 1327 aa21.08■□□□□ 0.96
SMPD3-211ENST00000568373 YEATS4O95619 227 aa21.08■□□□□ 0.96
SMPD3-211ENST00000568373 HMGB2P26583 209 aaKnown RBP21.08■□□□□ 0.96
SMPD3-211ENST00000568373 DDR1Q08345 913 aa21.08■□□□□ 0.96
SMPD3-211ENST00000568373 ZNF654Q8IZM8 581 aa21.08■□□□□ 0.96
SMPD3-211ENST00000568373 PROM2Q8N271 834 aa21.08■□□□□ 0.96
SMPD3-211ENST00000568373 LINC00301Q8NCQ3 95 aa21.08■□□□□ 0.96
SMPD3-211ENST00000568373 SLC26A6Q9BXS9 759 aa21.08■□□□□ 0.96
SMPD3-211ENST00000568373 LAMB1P07942 1786 aa21.07■□□□□ 0.96
SMPD3-211ENST00000568373 CCDC196A0A1B0GTZ2 297 aa21.07■□□□□ 0.96
SMPD3-211ENST00000568373 GPSM2P81274 684 aa21.07■□□□□ 0.96
SMPD3-211ENST00000568373 TYRO3Q06418 890 aa21.07■□□□□ 0.96
SMPD3-211ENST00000568373 CKAP2LQ8IYA6 745 aa21.07■□□□□ 0.96
SMPD3-211ENST00000568373 KCNG4Q8TDN1 519 aa21.07■□□□□ 0.96
SMPD3-211ENST00000568373 CLIC4Q9Y696 253 aa21.07■□□□□ 0.96
SMPD3-211ENST00000568373 POLRMTO00411 1230 aaKnown RBP21.06■□□□□ 0.96
SMPD3-211ENST00000568373 TRIM29Q14134 588 aa21.06■□□□□ 0.96
SMPD3-211ENST00000568373 CCDC73Q6ZRK6 1079 aa21.06■□□□□ 0.96
SMPD3-211ENST00000568373 WASF1Q92558 559 aa21.06■□□□□ 0.96
SMPD3-211ENST00000568373 GOLPH3LQ9H4A5 285 aa21.06■□□□□ 0.96
SMPD3-211ENST00000568373 LDHBP07195 334 aaKnown RBP21.06■□□□□ 0.96
SMPD3-211ENST00000568373 STK38Q15208 465 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms