RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 BRIP1Q9BX63 1249 aa22.32■■□□□ 1.16
SMPD3-203ENST00000563226 RNF41Q9H4P4 317 aaPredicted RBP22.32■■□□□ 1.16
SMPD3-203ENST00000563226 SLC12A7Q9Y666 1083 aa22.32■■□□□ 1.16
SMPD3-203ENST00000563226 CCDC69A6NI79 296 aa22.32■■□□□ 1.16
SMPD3-203ENST00000563226 DACT1Q9NYF0 836 aa22.32■■□□□ 1.16
SMPD3-203ENST00000563226 LAMB1P07942 1786 aa22.31■■□□□ 1.16
SMPD3-203ENST00000563226 POLRMTO00411 1230 aaKnown RBP22.31■■□□□ 1.16
SMPD3-203ENST00000563226 ANP32BQ92688 251 aaKnown RBP22.31■■□□□ 1.16
SMPD3-203ENST00000563226 RCOR1Q9UKL0 485 aa22.31■■□□□ 1.16
SMPD3-203ENST00000563226 KIAA1551Q9HCM1 1747 aa22.31■■□□□ 1.16
SMPD3-203ENST00000563226 KIF28PB7ZC32 967 aa22.3■■□□□ 1.16
SMPD3-203ENST00000563226 UBE2Q2LH0YL09 131 aa22.3■■□□□ 1.16
SMPD3-203ENST00000563226 WTAPQ15007 396 aa22.3■■□□□ 1.16
SMPD3-203ENST00000563226 CTR9Q6PD62 1173 aa22.3■■□□□ 1.16
SMPD3-203ENST00000563226 BICD2Q8TD16 824 aa22.3■■□□□ 1.16
SMPD3-203ENST00000563226 RRAGDQ9NQL2 400 aaPredicted RBP22.3■■□□□ 1.16
SMPD3-203ENST00000563226 CAMK4Q16566 473 aa22.3■■□□□ 1.16
SMPD3-203ENST00000563226 ZNF827Q17R98 1081 aa22.3■■□□□ 1.16
SMPD3-203ENST00000563226 FAM43AQ8N2R8 423 aa22.3■■□□□ 1.16
SMPD3-203ENST00000563226 NR1I2O75469 434 aa22.29■■□□□ 1.16
SMPD3-203ENST00000563226 CDKL5O76039 1030 aa22.29■■□□□ 1.16
SMPD3-203ENST00000563226 GRIK5Q16478 980 aa22.29■■□□□ 1.16
SMPD3-203ENST00000563226 TDRD7Q8NHU6 1098 aaKnown RBP22.29■■□□□ 1.16
SMPD3-203ENST00000563226 ZNF396Q96N95 335 aaPredicted RBP22.29■■□□□ 1.16
SMPD3-203ENST00000563226 ALG1Q9BT22 464 aa22.29■■□□□ 1.16
SMPD3-203ENST00000563226 NUP62CLQ9H1M0 184 aa22.29■■□□□ 1.16
SMPD3-203ENST00000563226 TAOK2Q9UL54 1235 aa22.29■■□□□ 1.16
SMPD3-203ENST00000563226 NID2Q14112 1375 aa22.29■■□□□ 1.16
SMPD3-203ENST00000563226 ANKRD31Q8N7Z5 1873 aa22.29■■□□□ 1.16
SMPD3-203ENST00000563226 ZBTB22O15209 634 aa22.29■■□□□ 1.16
SMPD3-203ENST00000563226 POLR3DP05423 398 aaPredicted RBP22.29■■□□□ 1.16
SMPD3-203ENST00000563226 USP17L12C9JPN9 530 aa22.28■■□□□ 1.16
SMPD3-203ENST00000563226 USP17L21D6R901 530 aa22.28■■□□□ 1.16
SMPD3-203ENST00000563226 PRDM1O75626 825 aa22.28■■□□□ 1.16
SMPD3-203ENST00000563226 KIF23Q02241 960 aaPredicted RBP22.28■■□□□ 1.16
SMPD3-203ENST00000563226 SART3Q15020 963 aaKnown RBP22.28■■□□□ 1.16
SMPD3-203ENST00000563226 DZIP1Q86YF9 867 aaKnown RBP22.28■■□□□ 1.16
SMPD3-203ENST00000563226 RBM17Q96I25 401 aaKnown RBP22.28■■□□□ 1.16
SMPD3-203ENST00000563226 DCP1AQ9NPI6 582 aaPredicted RBP22.28■■□□□ 1.16
SMPD3-203ENST00000563226 UFL1O94874 794 aa22.27■■□□□ 1.16
SMPD3-203ENST00000563226 SEC23AQ15436 765 aa22.27■■□□□ 1.16
SMPD3-203ENST00000563226 ATL3Q6DD88 541 aa22.27■■□□□ 1.16
SMPD3-203ENST00000563226 CPLX2Q6PUV4 134 aaKnown RBP22.27■■□□□ 1.16
SMPD3-203ENST00000563226 PDLIM2Q96JY6 352 aa22.27■■□□□ 1.16
SMPD3-203ENST00000563226 ERICH2A1L162 156 aa22.27■■□□□ 1.16
SMPD3-203ENST00000563226 IARSP41252 1262 aaKnown RBP22.27■■□□□ 1.16
SMPD3-203ENST00000563226 ESR2Q92731 530 aa22.27■■□□□ 1.16
SMPD3-203ENST00000563226 UBAC1Q9BSL1 405 aa22.27■■□□□ 1.16
SMPD3-203ENST00000563226 CRNKL1Q9BZJ0 848 aaKnown RBP22.27■■□□□ 1.16
SMPD3-203ENST00000563226 TNKSO95271 1327 aa22.27■■□□□ 1.16
SMPD3-203ENST00000563226 CYP2D6P10635 497 aa22.26■■□□□ 1.15
SMPD3-203ENST00000563226 SYNE3Q6ZMZ3 975 aa22.26■■□□□ 1.15
SMPD3-203ENST00000563226 C15orf52Q6ZUT6 534 aaKnown RBP22.26■■□□□ 1.15
SMPD3-203ENST00000563226 ZNF804AQ7Z570 1209 aa22.26■■□□□ 1.15
SMPD3-203ENST00000563226 MTA3Q9BTC8 594 aa22.26■■□□□ 1.15
SMPD3-203ENST00000563226 SLC26A6Q9BXS9 759 aa22.26■■□□□ 1.15
SMPD3-203ENST00000563226 RBM6P78332 1123 aaKnown RBP22.26■■□□□ 1.15
SMPD3-203ENST00000563226 RTN1Q16799 776 aa22.26■■□□□ 1.15
SMPD3-203ENST00000563226 MYSM1Q5VVJ2 828 aa22.26■■□□□ 1.15
SMPD3-203ENST00000563226 KRT40Q6A162 431 aa22.26■■□□□ 1.15
SMPD3-203ENST00000563226 TRIM44Q96DX7 344 aaPredicted RBP22.26■■□□□ 1.15
SMPD3-203ENST00000563226 GOLPH3LQ9H4A5 285 aa22.26■■□□□ 1.15
SMPD3-203ENST00000563226 CLSTN2Q9H4D0 955 aa22.26■■□□□ 1.15
SMPD3-203ENST00000563226 DDX19AQ9NUU7 478 aaKnown RBP22.26■■□□□ 1.15
SMPD3-203ENST00000563226 CLIC4Q9Y696 253 aa22.26■■□□□ 1.15
SMPD3-203ENST00000563226 DLEC1Q9Y238 1755 aa22.25■■□□□ 1.15
SMPD3-203ENST00000563226 MAP3K11Q16584 847 aa22.25■■□□□ 1.15
SMPD3-203ENST00000563226 SPTY2D1Q68D10 685 aaPredicted RBP22.25■■□□□ 1.15
SMPD3-203ENST00000563226 ZNF654Q8IZM8 581 aa22.25■■□□□ 1.15
SMPD3-203ENST00000563226 WDR66Q8TBY9 1149 aa22.25■■□□□ 1.15
SMPD3-203ENST00000563226 RTEL1Q9NZ71 1219 aa22.25■■□□□ 1.15
SMPD3-203ENST00000563226 LTBP1Q14766 1721 aa22.25■■□□□ 1.15
SMPD3-203ENST00000563226 LDHBP07195 334 aaKnown RBP22.24■■□□□ 1.15
SMPD3-203ENST00000563226 FGRP09769 529 aa22.24■■□□□ 1.15
SMPD3-203ENST00000563226 HOXA10P31260 410 aaPredicted RBP22.24■■□□□ 1.15
SMPD3-203ENST00000563226 DIXDC1Q155Q3 683 aa22.24■■□□□ 1.15
SMPD3-203ENST00000563226 CKAP2LQ8IYA6 745 aa22.24■■□□□ 1.15
SMPD3-203ENST00000563226 CMTR1Q8N1G2 835 aaKnown RBP22.24■■□□□ 1.15
SMPD3-203ENST00000563226 ENAHQ8N8S7 591 aaPredicted RBP22.24■■□□□ 1.15
SMPD3-203ENST00000563226 TNMDQ9H2S6 317 aa22.24■■□□□ 1.15
SMPD3-203ENST00000563226 LRRC37AA6NMS7 1700 aa22.24■■□□□ 1.15
SMPD3-203ENST00000563226 STK36Q9NRP7 1315 aa22.24■■□□□ 1.15
SMPD3-203ENST00000563226 FMNL1O95466 1100 aaPredicted RBP22.24■■□□□ 1.15
SMPD3-203ENST00000563226 IFNAR1P17181 557 aa22.24■■□□□ 1.15
SMPD3-203ENST00000563226 GUCY1A2P33402 732 aa22.24■■□□□ 1.15
SMPD3-203ENST00000563226 BRAPQ7Z569 592 aa22.24■■□□□ 1.15
SMPD3-203ENST00000563226 CCAR1Q8IX12 1150 aaKnown RBP22.24■■□□□ 1.15
SMPD3-203ENST00000563226 NUP133Q8WUM0 1156 aa22.24■■□□□ 1.15
SMPD3-203ENST00000563226 GGA1Q9UJY5 639 aa22.24■■□□□ 1.15
SMPD3-203ENST00000563226 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.24■■□□□ 1.15
SMPD3-203ENST00000563226 ATP2B4P23634 1241 aa22.23■■□□□ 1.15
SMPD3-203ENST00000563226 SSRP1Q08945 709 aaKnown RBP22.23■■□□□ 1.15
SMPD3-203ENST00000563226 COL23A1Q86Y22 540 aaPredicted RBP22.23■■□□□ 1.15
SMPD3-203ENST00000563226 AKT1S1Q96B36 256 aa22.23■■□□□ 1.15
SMPD3-203ENST00000563226 ZSCAN10Q96SZ4 725 aaPredicted RBP22.23■■□□□ 1.15
SMPD3-203ENST00000563226 CD209Q9NNX6 404 aa22.23■■□□□ 1.15
SMPD3-203ENST00000563226 ATP8A2Q9NTI2 1148 aa22.23■■□□□ 1.15
SMPD3-203ENST00000563226 KLRG2A4D1S0 409 aaPredicted RBP22.22■■□□□ 1.15
SMPD3-203ENST00000563226 SLC4A8Q2Y0W8 1093 aa22.22■■□□□ 1.15
SMPD3-203ENST00000563226 NBPF11Q86T75 865 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 110.5 ms