RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 RPAP2Q8IXW5 612 aaPredicted RBP20.64■□□□□ 0.89
CLK3-210ENST00000563112 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.64■□□□□ 0.89
CLK3-210ENST00000563112 CCDC8Q9H0W5 538 aaPredicted RBP20.64■□□□□ 0.89
CLK3-210ENST00000563112 PPATQ06203 517 aa20.63■□□□□ 0.89
CLK3-210ENST00000563112 CRHR2Q13324 411 aa20.63■□□□□ 0.89
CLK3-210ENST00000563112 SNAPC2Q13487 334 aa20.63■□□□□ 0.89
CLK3-210ENST00000563112 BRI3BPQ8WY22 251 aa20.63■□□□□ 0.89
CLK3-210ENST00000563112 EXOC6BQ9Y2D4 811 aa20.63■□□□□ 0.89
CLK3-210ENST00000563112 IRF6O14896 467 aa20.62■□□□□ 0.89
CLK3-210ENST00000563112 IGSF3O75054 1194 aa20.62■□□□□ 0.89
CLK3-210ENST00000563112 NAA16Q6N069 864 aaPredicted RBP20.62■□□□□ 0.89
CLK3-210ENST00000563112 ZNF384Q8TF68 577 aa20.62■□□□□ 0.89
CLK3-210ENST00000563112 EAF2Q96CJ1 260 aaPredicted RBP20.62■□□□□ 0.89
CLK3-210ENST00000563112 DBNLQ9UJU6 430 aaKnown RBP20.62■□□□□ 0.89
CLK3-210ENST00000563112 NPM3O75607 178 aaKnown RBP20.61■□□□□ 0.89
CLK3-210ENST00000563112 BAG3O95817 575 aa20.61■□□□□ 0.89
CLK3-210ENST00000563112 RHBDL3P58872 404 aa20.61■□□□□ 0.89
CLK3-210ENST00000563112 TAF1CQ15572 869 aaPredicted RBP20.61■□□□□ 0.89
CLK3-210ENST00000563112 NOL9Q5SY16 702 aaKnown RBP20.61■□□□□ 0.89
CLK3-210ENST00000563112 ERO1AQ96HE7 468 aa20.61■□□□□ 0.89
CLK3-210ENST00000563112 ZFYVE28Q9HCC9 887 aa20.61■□□□□ 0.89
CLK3-210ENST00000563112 DDX4Q9NQI0 724 aaKnown RBP20.61■□□□□ 0.89
CLK3-210ENST00000563112 ZBTB40Q9NUA8 1239 aa20.61■□□□□ 0.89
CLK3-210ENST00000563112 RFX7Q2KHR2 1363 aa20.6■□□□□ 0.89
CLK3-210ENST00000563112 AACSQ86V21 672 aa20.6■□□□□ 0.89
CLK3-210ENST00000563112 TLR7Q9NYK1 1049 aaKnown RBP20.6■□□□□ 0.89
CLK3-210ENST00000563112 DOCK2Q92608 1830 aa20.6■□□□□ 0.89
CLK3-210ENST00000563112 DDTLA6NHG4 134 aaPredicted RBP20.59■□□□□ 0.89
CLK3-210ENST00000563112 CYP2E1P05181 493 aaPredicted RBP20.59■□□□□ 0.89
CLK3-210ENST00000563112 PLCG2P16885 1265 aa20.59■□□□□ 0.89
CLK3-210ENST00000563112 ZAP70P43403 619 aa20.59■□□□□ 0.89
CLK3-210ENST00000563112 PDE3AQ14432 1141 aa20.59■□□□□ 0.89
CLK3-210ENST00000563112 FBXO46Q6PJ61 603 aaPredicted RBP20.59■□□□□ 0.89
CLK3-210ENST00000563112 SH3BP5LQ7L8J4 393 aa20.59■□□□□ 0.89
CLK3-210ENST00000563112 TEX11Q8IYF3 940 aa20.59■□□□□ 0.89
CLK3-210ENST00000563112 ZCCHC17Q9NP64 241 aaKnown RBP20.59■□□□□ 0.89
CLK3-210ENST00000563112 SP3Q02447 781 aa20.58■□□□□ 0.89
CLK3-210ENST00000563112 FAM43AQ8N2R8 423 aa20.58■□□□□ 0.89
CLK3-210ENST00000563112 RHPN1Q8TCX5 695 aa20.58■□□□□ 0.89
CLK3-210ENST00000563112 PICK1Q9NRD5 415 aa20.58■□□□□ 0.89
CLK3-210ENST00000563112 HPS5Q9UPZ3 1129 aa20.58■□□□□ 0.89
CLK3-210ENST00000563112 MAP3K10Q02779 954 aa20.57■□□□□ 0.88
CLK3-210ENST00000563112 ARHGEF6Q15052 776 aa20.57■□□□□ 0.88
CLK3-210ENST00000563112 SCYL3Q8IZE3 742 aa20.57■□□□□ 0.88
CLK3-210ENST00000563112 CLASRPQ8N2M8 674 aaKnown RBP20.57■□□□□ 0.88
CLK3-210ENST00000563112 KIF1BPQ96EK5 621 aa20.57■□□□□ 0.88
CLK3-210ENST00000563112 IL1RAPL2Q9NP60 686 aa20.57■□□□□ 0.88
CLK3-210ENST00000563112 TRIM17Q9Y577 477 aa20.57■□□□□ 0.88
CLK3-210ENST00000563112 ATRNL1Q5VV63 1379 aa20.57■□□□□ 0.88
CLK3-210ENST00000563112 PHF20L1A8MW92 1017 aa20.56■□□□□ 0.88
CLK3-210ENST00000563112 BTBD19C9JJ37 291 aa20.56■□□□□ 0.88
CLK3-210ENST00000563112 APBB1O00213 710 aa20.56■□□□□ 0.88
CLK3-210ENST00000563112 PIH1D3Q9NQM4 214 aaKnown RBP20.56■□□□□ 0.88
CLK3-210ENST00000563112 AATFQ9NY61 560 aaKnown RBP eCLIP20.56■□□□□ 0.88
CLK3-210ENST00000563112 KCNH4Q9UQ05 1017 aa20.56■□□□□ 0.88
CLK3-210ENST00000563112 CXCL11O14625 94 aa20.55■□□□□ 0.88
CLK3-210ENST00000563112 TBC1D12O60347 775 aa20.55■□□□□ 0.88
CLK3-210ENST00000563112 CTNND1O60716 968 aaKnown RBP20.55■□□□□ 0.88
CLK3-210ENST00000563112 RAB11FIP3O75154 756 aa20.55■□□□□ 0.88
CLK3-210ENST00000563112 RGS19P49795 217 aa20.55■□□□□ 0.88
CLK3-210ENST00000563112 PPP4CP60510 307 aa20.55■□□□□ 0.88
CLK3-210ENST00000563112 CD99L2Q8TCZ2 262 aa20.55■□□□□ 0.88
CLK3-210ENST00000563112 SH3RF3Q8TEJ3 882 aaPredicted RBP20.55■□□□□ 0.88
CLK3-210ENST00000563112 OSBPL5Q9H0X9 879 aaPredicted RBP20.55■□□□□ 0.88
CLK3-210ENST00000563112 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.55■□□□□ 0.88
CLK3-210ENST00000563112 MAST2Q6P0Q8 1798 aa20.54■□□□□ 0.88
CLK3-210ENST00000563112 IDH1O75874 414 aaKnown RBP20.54■□□□□ 0.88
CLK3-210ENST00000563112 CYP7A1P22680 504 aa20.54■□□□□ 0.88
CLK3-210ENST00000563112 MLLT1Q03111 559 aaPredicted RBP20.54■□□□□ 0.88
CLK3-210ENST00000563112 OTOP1Q7RTM1 612 aa20.54■□□□□ 0.88
CLK3-210ENST00000563112 ANKRD23Q86SG2 305 aa20.54■□□□□ 0.88
CLK3-210ENST00000563112 SIRT2Q8IXJ6 389 aa20.54■□□□□ 0.88
CLK3-210ENST00000563112 EFCC1Q9HA90 598 aa20.54■□□□□ 0.88
CLK3-210ENST00000563112 ZHX2Q9Y6X8 837 aa20.54■□□□□ 0.88
CLK3-210ENST00000563112 COL2A1P02458 1487 aaPredicted RBP20.54■□□□□ 0.88
CLK3-210ENST00000563112 TLR2O60603 784 aa20.53■□□□□ 0.88
CLK3-210ENST00000563112 IFIT2P09913 472 aaKnown RBP20.53■□□□□ 0.88
CLK3-210ENST00000563112 PTPRAP18433 802 aa20.53■□□□□ 0.88
CLK3-210ENST00000563112 MAP3K12Q12852 859 aa20.53■□□□□ 0.88
CLK3-210ENST00000563112 TMED8Q6PL24 325 aaPredicted RBP20.53■□□□□ 0.88
CLK3-210ENST00000563112 DHX36Q9H2U1 1008 aaKnown RBP20.53■□□□□ 0.88
CLK3-210ENST00000563112 KIF22Q14807 665 aa20.52■□□□□ 0.88
CLK3-210ENST00000563112 C20orf194Q5TEA3 1177 aa20.52■□□□□ 0.88
CLK3-210ENST00000563112 CERS3Q8IU89 383 aa20.52■□□□□ 0.88
CLK3-210ENST00000563112 TGFBRAP1Q8WUH2 860 aa20.52■□□□□ 0.88
CLK3-210ENST00000563112 BCL11AQ9H165 835 aa20.52■□□□□ 0.88
CLK3-210ENST00000563112 PDHXO00330 501 aa20.51■□□□□ 0.87
CLK3-210ENST00000563112 SOX10P56693 466 aa20.51■□□□□ 0.87
CLK3-210ENST00000563112 TTF1Q15361 905 aaPredicted RBP20.51■□□□□ 0.87
CLK3-210ENST00000563112 FASTKD5Q7L8L6 764 aaKnown RBP20.51■□□□□ 0.87
CLK3-210ENST00000563112 ADGRA1Q86SQ6 560 aa20.51■□□□□ 0.87
CLK3-210ENST00000563112 MAPKAPK5Q8IW41 473 aa20.51■□□□□ 0.87
CLK3-210ENST00000563112 PI4KBQ9UBF8 816 aa20.51■□□□□ 0.87
CLK3-210ENST00000563112 HERC5Q9UII4 1024 aaKnown RBP20.51■□□□□ 0.87
CLK3-210ENST00000563112 MYO5AQ9Y4I1 1855 aaKnown RBP20.51■□□□□ 0.87
CLK3-210ENST00000563112 SLURP2P0DP57 97 aa20.5■□□□□ 0.87
CLK3-210ENST00000563112 MAGEB6Q8N7X4 407 aa20.5■□□□□ 0.87
CLK3-210ENST00000563112 TRIM34Q9BYJ4 488 aa20.5■□□□□ 0.87
CLK3-210ENST00000563112 PTPN22Q9Y2R2 807 aa20.5■□□□□ 0.87
CLK3-210ENST00000563112 AFG3L2Q9Y4W6 797 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms