RNA–Protein interactions for RNA: ENST00000561940.1

SMG1-204, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 964 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-204ENST00000561940 DAGLAQ9Y4D2 1042 aa10.18□□□□□ -0.78
SMG1-204ENST00000561940 DCDC2CA8MYV0 355 aa10.17□□□□□ -0.78
SMG1-204ENST00000561940 RNGTTO60942 597 aaKnown RBP10.17□□□□□ -0.78
SMG1-204ENST00000561940 FANCCQ00597 558 aa10.17□□□□□ -0.78
SMG1-204ENST00000561940 PTPN11Q06124 597 aaPredicted RBP10.17□□□□□ -0.78
SMG1-204ENST00000561940 LRRC14Q15048 493 aa10.17□□□□□ -0.78
SMG1-204ENST00000561940 TAF1CQ15572 869 aaPredicted RBP10.17□□□□□ -0.78
SMG1-204ENST00000561940 CRELD1Q96HD1 420 aa10.17□□□□□ -0.78
SMG1-204ENST00000561940 YIPF2Q9BWQ6 316 aa10.17□□□□□ -0.78
SMG1-204ENST00000561940 SEMA6CQ9H3T2 930 aa10.17□□□□□ -0.78
SMG1-204ENST00000561940 PIDD1Q9HB75 910 aa10.17□□□□□ -0.78
SMG1-204ENST00000561940 PCDHA4Q9UN74 947 aa10.17□□□□□ -0.78
SMG1-204ENST00000561940 PCDHGC5Q9Y5F6 944 aa10.17□□□□□ -0.78
SMG1-204ENST00000561940 HCLS1P14317 486 aaPredicted RBP10.16□□□□□ -0.78
SMG1-204ENST00000561940 TTLL4Q14679 1199 aa10.16□□□□□ -0.78
SMG1-204ENST00000561940 ACSS3Q9H6R3 686 aa10.16□□□□□ -0.78
SMG1-204ENST00000561940 CYP8B1Q9UNU6 501 aa10.16□□□□□ -0.78
SMG1-204ENST00000561940 WDR64B1ANS9 1081 aa10.15□□□□□ -0.78
SMG1-204ENST00000561940 DYNC1LI2O43237 492 aaPredicted RBP10.15□□□□□ -0.78
SMG1-204ENST00000561940 HNRNPUQ00839 825 aaKnown RBP eCLIP10.15□□□□□ -0.78
SMG1-204ENST00000561940 ZC3H12AQ5D1E8 599 aaKnown RBP10.15□□□□□ -0.78
SMG1-204ENST00000561940 METTL16Q86W50 562 aaKnown RBP10.15□□□□□ -0.78
SMG1-204ENST00000561940 C12orf40Q86WS4 652 aa10.15□□□□□ -0.78
SMG1-204ENST00000561940 SHKBP1Q8TBC3 707 aa10.15□□□□□ -0.78
SMG1-204ENST00000561940 EZH1Q92800 747 aaPredicted RBP10.15□□□□□ -0.78
SMG1-204ENST00000561940 ATXN3LQ9H3M9 355 aa10.15□□□□□ -0.78
SMG1-204ENST00000561940 GSX1Q9H4S2 264 aaPredicted RBP10.15□□□□□ -0.78
SMG1-204ENST00000561940 PCDHB5Q9Y5E4 795 aa10.15□□□□□ -0.78
SMG1-204ENST00000561940 SYNGAP1Q96PV0 1343 aa10.14□□□□□ -0.79
SMG1-204ENST00000561940 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.14□□□□□ -0.79
SMG1-204ENST00000561940 GSC2O15499 205 aa10.14□□□□□ -0.79
SMG1-204ENST00000561940 TRIM37O94972 964 aa10.14□□□□□ -0.79
SMG1-204ENST00000561940 ADMP35318 185 aa10.14□□□□□ -0.79
SMG1-204ENST00000561940 TBC1D32Q96NH3 1257 aa10.14□□□□□ -0.79
SMG1-204ENST00000561940 DBNDD2Q9BQY9 259 aa10.14□□□□□ -0.79
SMG1-204ENST00000561940 USP31Q70CQ4 1352 aa10.14□□□□□ -0.79
SMG1-204ENST00000561940 SCO2A0A1W2PP80 73 aa10.13□□□□□ -0.79
SMG1-204ENST00000561940 IGSF3O75054 1194 aa10.13□□□□□ -0.79
SMG1-204ENST00000561940 TGFB1P01137 390 aa10.13□□□□□ -0.79
SMG1-204ENST00000561940 LMNB1P20700 586 aa10.13□□□□□ -0.79
SMG1-204ENST00000561940 ERCC5P28715 1186 aaPredicted RBP10.13□□□□□ -0.79
SMG1-204ENST00000561940 ITGAEP38570 1179 aa10.13□□□□□ -0.79
SMG1-204ENST00000561940 MAP7Q14244 749 aa10.13□□□□□ -0.79
SMG1-204ENST00000561940 PPM1JQ5JR12 505 aa10.13□□□□□ -0.79
SMG1-204ENST00000561940 SSU72Q9NP77 194 aaKnown RBP10.13□□□□□ -0.79
SMG1-204ENST00000561940 CACNA2D2Q9NY47 1150 aa10.13□□□□□ -0.79
SMG1-204ENST00000561940 PRKAG2Q9UGJ0 569 aa10.13□□□□□ -0.79
SMG1-204ENST00000561940 TLR6Q9Y2C9 796 aa10.13□□□□□ -0.79
SMG1-204ENST00000561940 F13BP05160 661 aa10.12□□□□□ -0.79
SMG1-204ENST00000561940 ZNF76P36508 570 aa10.12□□□□□ -0.79
SMG1-204ENST00000561940 LIG3P49916 1009 aa10.12□□□□□ -0.79
SMG1-204ENST00000561940 RAD51AP2Q09MP3 1159 aa10.12□□□□□ -0.79
SMG1-204ENST00000561940 SEPT6Q14141 434 aa10.12□□□□□ -0.79
SMG1-204ENST00000561940 INPP5AQ14642 412 aa10.12□□□□□ -0.79
SMG1-204ENST00000561940 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.12□□□□□ -0.79
SMG1-204ENST00000561940 ZDHHC13Q8IUH4 622 aa10.12□□□□□ -0.79
SMG1-204ENST00000561940 SMYD4Q8IYR2 804 aaPredicted RBP10.12□□□□□ -0.79
SMG1-204ENST00000561940 PICK1Q9NRD5 415 aa10.12□□□□□ -0.79
SMG1-204ENST00000561940 CDK8P49336 464 aa10.11□□□□□ -0.79
SMG1-204ENST00000561940 NT5DC4Q86YG4 428 aa10.11□□□□□ -0.79
SMG1-204ENST00000561940 NEFMP07197 916 aa10.1□□□□□ -0.79
SMG1-204ENST00000561940 SSTR4P31391 388 aa10.1□□□□□ -0.79
SMG1-204ENST00000561940 ST13P50502 369 aaKnown RBP10.1□□□□□ -0.79
SMG1-204ENST00000561940 SLC51AQ86UW1 340 aa10.1□□□□□ -0.79
SMG1-204ENST00000561940 JARID2Q92833 1246 aaPredicted RBP10.1□□□□□ -0.79
SMG1-204ENST00000561940 RNF34Q969K3 372 aa10.1□□□□□ -0.79
SMG1-204ENST00000561940 GAL3ST3Q96A11 431 aa10.1□□□□□ -0.79
SMG1-204ENST00000561940 ELMO3Q96BJ8 720 aa10.1□□□□□ -0.79
SMG1-204ENST00000561940 METTL5Q9NRN9 209 aaKnown RBP10.1□□□□□ -0.79
SMG1-204ENST00000561940 RNF112Q9ULX5 631 aa10.1□□□□□ -0.79
SMG1-204ENST00000561940 FAM170BA6NMN3 283 aa10.09□□□□□ -0.79
SMG1-204ENST00000561940 TFE3P19532 575 aaPredicted RBP10.09□□□□□ -0.79
SMG1-204ENST00000561940 ERVK-24P63145 666 aa10.09□□□□□ -0.79
SMG1-204ENST00000561940 LRFN4Q6PJG9 635 aa10.09□□□□□ -0.79
SMG1-204ENST00000561940 AGMOQ6ZNB7 445 aa10.09□□□□□ -0.79
SMG1-204ENST00000561940 ISL2Q96A47 359 aa10.09□□□□□ -0.79
SMG1-204ENST00000561940 C1GALT1Q9NS00 363 aa10.09□□□□□ -0.79
SMG1-204ENST00000561940 ATG3Q9NT62 314 aa10.09□□□□□ -0.79
SMG1-204ENST00000561940 PRAMEF27A3QJZ7 478 aa10.08□□□□□ -0.8
SMG1-204ENST00000561940 PRR19A6NJB7 356 aa10.08□□□□□ -0.8
SMG1-204ENST00000561940 CDK5R2Q13319 367 aa10.08□□□□□ -0.8
SMG1-204ENST00000561940 SEZ6L2Q6UXD5 910 aa10.08□□□□□ -0.8
SMG1-204ENST00000561940 ZAR1Q86SH2 424 aa10.08□□□□□ -0.8
SMG1-204ENST00000561940 RNF214Q8ND24 703 aa10.08□□□□□ -0.8
SMG1-204ENST00000561940 PLPPR2Q96GM1 343 aa10.08□□□□□ -0.8
SMG1-204ENST00000561940 OSBPL1AQ9BXW6 950 aa10.08□□□□□ -0.8
SMG1-204ENST00000561940 RPS26P62854 115 aaKnown RBP10.07□□□□□ -0.8
SMG1-204ENST00000561940 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.07□□□□□ -0.8
SMG1-204ENST00000561940 GATA6Q92908 595 aa10.07□□□□□ -0.8
SMG1-204ENST00000561940 NOC4LQ9BVI4 516 aaKnown RBP10.07□□□□□ -0.8
SMG1-204ENST00000561940 MINDY4BA8MYZ0 360 aa10.06□□□□□ -0.8
SMG1-204ENST00000561940 ZNF394Q53GI3 561 aa10.06□□□□□ -0.8
SMG1-204ENST00000561940 UBE3DQ7Z6J8 389 aa10.06□□□□□ -0.8
SMG1-204ENST00000561940 Q8N3U1 123 aa10.06□□□□□ -0.8
SMG1-204ENST00000561940 PHC3Q8NDX5 983 aa10.06□□□□□ -0.8
SMG1-204ENST00000561940 GIMAP7Q8NHV1 300 aa10.06□□□□□ -0.8
SMG1-204ENST00000561940 MIR1-1HGQ9H1L0 117 aa10.06□□□□□ -0.8
SMG1-204ENST00000561940 PCOLCE2Q9UKZ9 415 aa10.06□□□□□ -0.8
SMG1-204ENST00000561940 PCDHGB7Q9Y5F8 929 aa10.06□□□□□ -0.8
SMG1-204ENST00000561940 MED26O95402 600 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms