RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 CD2BP2O95400 341 aaKnown RBP12.18□□□□□ -0.46
USP3-219ENST00000561326 CPA1P15085 419 aa12.18□□□□□ -0.46
USP3-219ENST00000561326 NT5C2P49902 561 aa12.18□□□□□ -0.46
USP3-219ENST00000561326 AK2P54819 239 aa12.18□□□□□ -0.46
USP3-219ENST00000561326 PPARAQ07869 468 aa12.18□□□□□ -0.46
USP3-219ENST00000561326 CTR9Q6PD62 1173 aa12.18□□□□□ -0.46
USP3-219ENST00000561326 TGFBRAP1Q8WUH2 860 aa12.18□□□□□ -0.46
USP3-219ENST00000561326 MXD3Q9BW11 206 aa12.18□□□□□ -0.46
USP3-219ENST00000561326 SH2B1Q9NRF2 756 aaPredicted RBP12.18□□□□□ -0.46
USP3-219ENST00000561326 USP40Q9NVE5 1235 aa12.18□□□□□ -0.46
USP3-219ENST00000561326 MCM9Q9NXL9 1143 aa12.18□□□□□ -0.46
USP3-219ENST00000561326 TAF6LQ9Y6J9 622 aa12.18□□□□□ -0.46
USP3-219ENST00000561326 POLR3DP05423 398 aaPredicted RBP12.17□□□□□ -0.46
USP3-219ENST00000561326 EIF6P56537 245 aaKnown RBP12.17□□□□□ -0.46
USP3-219ENST00000561326 EXOSC10Q01780 885 aaKnown RBP12.17□□□□□ -0.46
USP3-219ENST00000561326 CTDSPL2Q05D32 466 aa12.17□□□□□ -0.46
USP3-219ENST00000561326 CXCL9Q07325 125 aa12.17□□□□□ -0.46
USP3-219ENST00000561326 PDE4BQ07343 736 aa12.17□□□□□ -0.46
USP3-219ENST00000561326 STOX1Q6ZVD7 989 aa12.17□□□□□ -0.46
USP3-219ENST00000561326 STAG1Q8WVM7 1258 aa12.17□□□□□ -0.46
USP3-219ENST00000561326 ZNF287Q9HBT7 754 aa12.17□□□□□ -0.46
USP3-219ENST00000561326 TOMM22Q9NS69 142 aa12.17□□□□□ -0.46
USP3-219ENST00000561326 USP17L8P0C7I0 530 aa12.16□□□□□ -0.46
USP3-219ENST00000561326 LMNB1P20700 586 aa12.16□□□□□ -0.46
USP3-219ENST00000561326 RPS12P25398 132 aaKnown RBP12.16□□□□□ -0.46
USP3-219ENST00000561326 RHBDL3P58872 404 aa12.16□□□□□ -0.46
USP3-219ENST00000561326 SART3Q15020 963 aaKnown RBP12.16□□□□□ -0.46
USP3-219ENST00000561326 Q6ZUG5 572 aa12.16□□□□□ -0.46
USP3-219ENST00000561326 FBXL16Q8N461 479 aa12.16□□□□□ -0.46
USP3-219ENST00000561326 ESR2Q92731 530 aa12.16□□□□□ -0.46
USP3-219ENST00000561326 TMX3Q96JJ7 454 aa12.16□□□□□ -0.46
USP3-219ENST00000561326 CWC22Q9HCG8 908 aaKnown RBP12.16□□□□□ -0.46
USP3-219ENST00000561326 ERICH2A1L162 156 aa12.15□□□□□ -0.46
USP3-219ENST00000561326 PRC1O43663 620 aa12.15□□□□□ -0.46
USP3-219ENST00000561326 DLGAP5Q15398 846 aa12.15□□□□□ -0.46
USP3-219ENST00000561326 CFAP100Q494V2 611 aa12.15□□□□□ -0.46
USP3-219ENST00000561326 C12orf60Q5U649 245 aa12.15□□□□□ -0.46
USP3-219ENST00000561326 APOBEC3HQ6NTF7 200 aaKnown RBP12.15□□□□□ -0.46
USP3-219ENST00000561326 CDC42EP5Q6NZY7 148 aa12.15□□□□□ -0.46
USP3-219ENST00000561326 NOL8Q76FK4 1167 aaKnown RBP12.15□□□□□ -0.46
USP3-219ENST00000561326 TTC6Q86TZ1 520 aa12.15□□□□□ -0.46
USP3-219ENST00000561326 MAPKAPK5Q8IW41 473 aa12.15□□□□□ -0.46
USP3-219ENST00000561326 TMTC2Q8N394 836 aa12.15□□□□□ -0.46
USP3-219ENST00000561326 SPRYD3Q8NCJ5 442 aa12.15□□□□□ -0.46
USP3-219ENST00000561326 INTS4Q96HW7 963 aaKnown RBP12.15□□□□□ -0.46
USP3-219ENST00000561326 TMEM87BQ96K49 555 aa12.15□□□□□ -0.46
USP3-219ENST00000561326 GMLQ99445 158 aa12.15□□□□□ -0.46
USP3-219ENST00000561326 MTA3Q9BTC8 594 aa12.15□□□□□ -0.46
USP3-219ENST00000561326 TMOD2Q9NZR1 351 aa12.15□□□□□ -0.46
USP3-219ENST00000561326 MKRN1Q9UHC7 482 aaKnown RBP12.15□□□□□ -0.46
USP3-219ENST00000561326 B4E1Z4 1266 aa12.14□□□□□ -0.47
USP3-219ENST00000561326 FZD9O00144 591 aa12.14□□□□□ -0.47
USP3-219ENST00000561326 NPM3O75607 178 aaKnown RBP12.14□□□□□ -0.47
USP3-219ENST00000561326 FGRP09769 529 aa12.14□□□□□ -0.47
USP3-219ENST00000561326 RASSF7Q02833 373 aa12.14□□□□□ -0.47
USP3-219ENST00000561326 RRP12Q5JTH9 1297 aaKnown RBP12.14□□□□□ -0.47
USP3-219ENST00000561326 TBC1D10CQ8IV04 446 aa12.14□□□□□ -0.47
USP3-219ENST00000561326 MB21D2Q8IYB1 491 aaPredicted RBP12.14□□□□□ -0.47
USP3-219ENST00000561326 NBPF3Q9H094 633 aa12.14□□□□□ -0.47
USP3-219ENST00000561326 ZSWIM5Q9P217 1185 aa12.14□□□□□ -0.47
USP3-219ENST00000561326 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.14□□□□□ -0.47
USP3-219ENST00000561326 TIAM2Q8IVF5 1701 aa12.14□□□□□ -0.47
USP3-219ENST00000561326 MYO1BO43795 1136 aa12.13□□□□□ -0.47
USP3-219ENST00000561326 ORC4O43929 436 aa12.13□□□□□ -0.47
USP3-219ENST00000561326 KDM4AO75164 1064 aa12.13□□□□□ -0.47
USP3-219ENST00000561326 CUL4AQ13619 759 aa12.13□□□□□ -0.47
USP3-219ENST00000561326 TOB2Q14106 344 aaPredicted RBP12.13□□□□□ -0.47
USP3-219ENST00000561326 IQCA1Q86XH1 822 aa12.13□□□□□ -0.47
USP3-219ENST00000561326 ZNF444Q8N0Y2 327 aaPredicted RBP12.13□□□□□ -0.47
USP3-219ENST00000561326 DPF2Q92785 391 aa12.13□□□□□ -0.47
USP3-219ENST00000561326 BRF1Q92994 677 aa12.13□□□□□ -0.47
USP3-219ENST00000561326 ZNF274Q96GC6 653 aaPredicted RBP12.13□□□□□ -0.47
USP3-219ENST00000561326 TCEANC2Q96MN5 208 aa12.13□□□□□ -0.47
USP3-219ENST00000561326 UBAC1Q9BSL1 405 aa12.13□□□□□ -0.47
USP3-219ENST00000561326 AGXT2Q9BYV1 514 aa12.13□□□□□ -0.47
USP3-219ENST00000561326 DHX36Q9H2U1 1008 aaKnown RBP12.13□□□□□ -0.47
USP3-219ENST00000561326 MKNK2Q9HBH9 465 aa12.13□□□□□ -0.47
USP3-219ENST00000561326 SAP30BPQ9UHR5 308 aaKnown RBP12.13□□□□□ -0.47
USP3-219ENST00000561326 TAOK2Q9UL54 1235 aa12.13□□□□□ -0.47
USP3-219ENST00000561326 COL4A5P29400 1685 aa12.13□□□□□ -0.47
USP3-219ENST00000561326 ADAMTSL1Q8N6G6 1762 aa12.13□□□□□ -0.47
USP3-219ENST00000561326 FLT1P17948 1338 aa12.12□□□□□ -0.47
USP3-219ENST00000561326 CYP2D7A0A087X1C5 515 aa12.12□□□□□ -0.47
USP3-219ENST00000561326 IFIT3O14879 490 aaKnown RBP12.12□□□□□ -0.47
USP3-219ENST00000561326 RANBP6O60518 1105 aaKnown RBP12.12□□□□□ -0.47
USP3-219ENST00000561326 WDHD1O75717 1129 aaPredicted RBP12.12□□□□□ -0.47
USP3-219ENST00000561326 HLA-DOAP06340 250 aa12.12□□□□□ -0.47
USP3-219ENST00000561326 PICALMQ13492 652 aa12.12□□□□□ -0.47
USP3-219ENST00000561326 CCDC178Q5BJE1 867 aa12.12□□□□□ -0.47
USP3-219ENST00000561326 TMEM67Q5HYA8 995 aa12.12□□□□□ -0.47
USP3-219ENST00000561326 SYNE3Q6ZMZ3 975 aa12.12□□□□□ -0.47
USP3-219ENST00000561326 CHST3Q7LGC8 479 aa12.12□□□□□ -0.47
USP3-219ENST00000561326 STK11IPQ8N1F8 1099 aa12.12□□□□□ -0.47
USP3-219ENST00000561326 MTMR14Q8NCE2 650 aa12.12□□□□□ -0.47
USP3-219ENST00000561326 PRMT6Q96LA8 375 aaPredicted RBP12.12□□□□□ -0.47
USP3-219ENST00000561326 IDI2Q9BXS1 227 aa12.12□□□□□ -0.47
USP3-219ENST00000561326 LRRC2Q9BYS8 371 aa12.12□□□□□ -0.47
USP3-219ENST00000561326 SLKQ9H2G2 1235 aaPredicted RBP12.12□□□□□ -0.47
USP3-219ENST00000561326 CIZ1Q9ULV3 898 aaPredicted RBP12.12□□□□□ -0.47
USP3-219ENST00000561326 ANGEL1Q9UNK9 670 aaKnown RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms