RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 RGS3P49796 1198 aa16.26■□□□□ 0.19
TPM1-220ENST00000559556 ZFPM1Q8IX07 1006 aa16.26■□□□□ 0.19
TPM1-220ENST00000559556 TRIM47Q96LD4 638 aa16.26■□□□□ 0.19
TPM1-220ENST00000559556 CPA4Q9UI42 421 aa16.26■□□□□ 0.19
TPM1-220ENST00000559556 COL2A1P02458 1487 aaPredicted RBP16.26■□□□□ 0.19
TPM1-220ENST00000559556 PHF20L1A8MW92 1017 aa16.25■□□□□ 0.19
TPM1-220ENST00000559556 CXCL11O14625 94 aa16.25■□□□□ 0.19
TPM1-220ENST00000559556 MTX1Q13505 466 aa16.25■□□□□ 0.19
TPM1-220ENST00000559556 SLC4A8Q2Y0W8 1093 aa16.25■□□□□ 0.19
TPM1-220ENST00000559556 HABP4Q5JVS0 413 aaKnown RBP16.25■□□□□ 0.19
TPM1-220ENST00000559556 FAM163AQ96GL9 167 aaPredicted RBP16.25■□□□□ 0.19
TPM1-220ENST00000559556 SRRDQ9UH36 339 aa16.25■□□□□ 0.19
TPM1-220ENST00000559556 BCRP11274 1271 aa16.24■□□□□ 0.19
TPM1-220ENST00000559556 PSMC4P43686 418 aa16.24■□□□□ 0.19
TPM1-220ENST00000559556 RARSP54136 660 aaKnown RBP16.24■□□□□ 0.19
TPM1-220ENST00000559556 MAP3K10Q02779 954 aa16.24■□□□□ 0.19
TPM1-220ENST00000559556 DZIP1Q86YF9 867 aaKnown RBP16.24■□□□□ 0.19
TPM1-220ENST00000559556 SLF2Q8IX21 1173 aa16.24■□□□□ 0.19
TPM1-220ENST00000559556 SCYL3Q8IZE3 742 aa16.24■□□□□ 0.19
TPM1-220ENST00000559556 ARHGAP45Q92619 1136 aa16.24■□□□□ 0.19
TPM1-220ENST00000559556 PARK7Q99497 189 aaKnown RBP16.24■□□□□ 0.19
TPM1-220ENST00000559556 NAV1Q8NEY1 1877 aa16.24■□□□□ 0.19
TPM1-220ENST00000559556 MROH7-TTC4A0A0A0MT08 1334 aa16.23■□□□□ 0.19
TPM1-220ENST00000559556 A0A0G2JLL6 359 aaPredicted RBP16.23■□□□□ 0.19
TPM1-220ENST00000559556 A0A1B0GUL7 405 aa16.23■□□□□ 0.19
TPM1-220ENST00000559556 GNAI3P08754 354 aa16.23■□□□□ 0.19
TPM1-220ENST00000559556 OSBPP22059 807 aa16.23■□□□□ 0.19
TPM1-220ENST00000559556 TIMM10P62072 90 aa16.23■□□□□ 0.19
TPM1-220ENST00000559556 SPTY2D1Q68D10 685 aaPredicted RBP16.23■□□□□ 0.19
TPM1-220ENST00000559556 GPAT2Q6NUI2 795 aa16.23■□□□□ 0.19
TPM1-220ENST00000559556 SH3BP5LQ7L8J4 393 aa16.23■□□□□ 0.19
TPM1-220ENST00000559556 PRRT2Q7Z6L0 340 aaPredicted RBP16.23■□□□□ 0.19
TPM1-220ENST00000559556 ABCF2Q9UG63 623 aa16.23■□□□□ 0.19
TPM1-220ENST00000559556 SRGAP3O43295 1099 aa16.22■□□□□ 0.19
TPM1-220ENST00000559556 PTPRAP18433 802 aa16.22■□□□□ 0.19
TPM1-220ENST00000559556 HOXD10P28358 340 aa16.22■□□□□ 0.19
TPM1-220ENST00000559556 MVPQ14764 893 aaKnown RBP16.22■□□□□ 0.19
TPM1-220ENST00000559556 SHISA4Q96DD7 197 aa16.22■□□□□ 0.19
TPM1-220ENST00000559556 XAGE2Q96GT9 111 aa16.22■□□□□ 0.19
TPM1-220ENST00000559556 DDX4Q9NQI0 724 aaKnown RBP16.22■□□□□ 0.19
TPM1-220ENST00000559556 PICK1Q9NRD5 415 aa16.22■□□□□ 0.19
TPM1-220ENST00000559556 AKAP2Q9Y2D5 859 aa16.22■□□□□ 0.19
TPM1-220ENST00000559556 AFG3L2Q9Y4W6 797 aa16.22■□□□□ 0.19
TPM1-220ENST00000559556 DDX60LQ5H9U9 1706 aaKnown RBP16.22■□□□□ 0.19
TPM1-220ENST00000559556 MYPNQ86TC9 1320 aa16.21■□□□□ 0.19
TPM1-220ENST00000559556 DDTLA6NHG4 134 aaPredicted RBP16.21■□□□□ 0.19
TPM1-220ENST00000559556 MYCP01106 439 aaPredicted RBP16.21■□□□□ 0.19
TPM1-220ENST00000559556 GRK4P32298 578 aa16.21■□□□□ 0.19
TPM1-220ENST00000559556 BTDP43251 543 aa16.21■□□□□ 0.19
TPM1-220ENST00000559556 TFCP2Q12800 502 aa16.21■□□□□ 0.19
TPM1-220ENST00000559556 MTFR1Q15390 333 aa16.21■□□□□ 0.19
TPM1-220ENST00000559556 FASTKD5Q7L8L6 764 aaKnown RBP16.21■□□□□ 0.19
TPM1-220ENST00000559556 ZNF384Q8TF68 577 aa16.21■□□□□ 0.19
TPM1-220ENST00000559556 SLC45A1Q9Y2W3 748 aa16.21■□□□□ 0.19
TPM1-220ENST00000559556 ZHX2Q9Y6X8 837 aa16.21■□□□□ 0.19
TPM1-220ENST00000559556 COL6A3P12111 3177 aa16.21■□□□□ 0.19
TPM1-220ENST00000559556 ZNFX1Q9P2E3 1918 aaKnown RBP16.2■□□□□ 0.18
TPM1-220ENST00000559556 GPR75-ASB3A0A0A6YYF3 556 aa16.2■□□□□ 0.18
TPM1-220ENST00000559556 CTNND1O60716 968 aaKnown RBP16.2■□□□□ 0.18
TPM1-220ENST00000559556 NPM3O75607 178 aaKnown RBP16.2■□□□□ 0.18
TPM1-220ENST00000559556 ECM2O94769 699 aaPredicted RBP16.2■□□□□ 0.18
TPM1-220ENST00000559556 FMNL1O95466 1100 aaPredicted RBP16.2■□□□□ 0.18
TPM1-220ENST00000559556 CYP2C8P10632 490 aa16.2■□□□□ 0.18
TPM1-220ENST00000559556 RHBDL3P58872 404 aa16.2■□□□□ 0.18
TPM1-220ENST00000559556 MECOMQ03112 1051 aa16.2■□□□□ 0.18
TPM1-220ENST00000559556 ZSCAN29Q8IWY8 852 aaPredicted RBP16.2■□□□□ 0.18
TPM1-220ENST00000559556 RAET1EQ8TD07 263 aa16.2■□□□□ 0.18
TPM1-220ENST00000559556 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.2■□□□□ 0.18
TPM1-220ENST00000559556 LAMA2P24043 3122 aaKnown RBP16.2■□□□□ 0.18
TPM1-220ENST00000559556 PARP14Q460N5 1801 aa16.19■□□□□ 0.18
TPM1-220ENST00000559556 CCER2I3L3R5 266 aa16.19■□□□□ 0.18
TPM1-220ENST00000559556 ARID4AP29374 1257 aaPredicted RBP16.19■□□□□ 0.18
TPM1-220ENST00000559556 FCGRTP55899 365 aa16.19■□□□□ 0.18
TPM1-220ENST00000559556 PICALMQ13492 652 aa16.19■□□□□ 0.18
TPM1-220ENST00000559556 ERICH6Q7L0X2 663 aa16.19■□□□□ 0.18
TPM1-220ENST00000559556 BAZ2AQ9UIF9 1905 aaKnown RBP16.18■□□□□ 0.18
TPM1-220ENST00000559556 TBC1D12O60347 775 aa16.18■□□□□ 0.18
TPM1-220ENST00000559556 MAP4K4O95819 1239 aaPredicted RBP16.18■□□□□ 0.18
TPM1-220ENST00000559556 SLURP2P0DP57 97 aa16.18■□□□□ 0.18
TPM1-220ENST00000559556 PRKCZQ05513 592 aa16.18■□□□□ 0.18
TPM1-220ENST00000559556 GADL1Q6ZQY3 521 aa16.18■□□□□ 0.18
TPM1-220ENST00000559556 HMG20BQ9P0W2 317 aa16.18■□□□□ 0.18
TPM1-220ENST00000559556 GJB1P08034 283 aa16.17■□□□□ 0.18
TPM1-220ENST00000559556 CCL5P13501 91 aa16.17■□□□□ 0.18
TPM1-220ENST00000559556 TRIM27P14373 513 aa16.17■□□□□ 0.18
TPM1-220ENST00000559556 GJA8P48165 433 aa16.17■□□□□ 0.18
TPM1-220ENST00000559556 FXR1P51114 621 aaKnown RBP eCLIP16.17■□□□□ 0.18
TPM1-220ENST00000559556 PI16Q6UXB8 463 aa16.17■□□□□ 0.18
TPM1-220ENST00000559556 UBE2Q1Q7Z7E8 422 aa16.17■□□□□ 0.18
TPM1-220ENST00000559556 SPATA5Q8NB90 893 aa16.17■□□□□ 0.18
TPM1-220ENST00000559556 SLAIN1Q8ND83 568 aa16.17■□□□□ 0.18
TPM1-220ENST00000559556 NKX2-3Q8TAU0 364 aa16.17■□□□□ 0.18
TPM1-220ENST00000559556 NSUN4Q96CB9 384 aaKnown RBP16.17■□□□□ 0.18
TPM1-220ENST00000559556 GNAI2P04899 355 aa16.16■□□□□ 0.18
TPM1-220ENST00000559556 GSTO1P78417 241 aa16.16■□□□□ 0.18
TPM1-220ENST00000559556 NEUROD6Q96NK8 337 aa16.16■□□□□ 0.18
TPM1-220ENST00000559556 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.16■□□□□ 0.18
TPM1-220ENST00000559556 GABRQQ9UN88 632 aa16.16■□□□□ 0.18
TPM1-220ENST00000559556 AGTPBP1Q9UPW5 1226 aa16.16■□□□□ 0.18
TPM1-220ENST00000559556 PNMA6EA0A0J9YXQ4 647 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms