RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 MAP7D1Q3KQU3 841 aa10.14□□□□□ -0.79
SPG11-213ENST00000558988 FAM35AQ86V20 835 aa10.14□□□□□ -0.79
SPG11-213ENST00000558988 SLC9A9Q8IVB4 645 aa10.14□□□□□ -0.79
SPG11-213ENST00000558988 PLPP7Q8NBV4 271 aa10.14□□□□□ -0.79
SPG11-213ENST00000558988 ANKIB1Q9P2G1 1089 aa10.14□□□□□ -0.79
SPG11-213ENST00000558988 STOML1Q9UBI4 398 aa10.14□□□□□ -0.79
SPG11-213ENST00000558988 PCDHGA11Q9Y5H2 935 aa10.14□□□□□ -0.79
SPG11-213ENST00000558988 NSD3Q9BZ95 1437 aa10.14□□□□□ -0.79
SPG11-213ENST00000558988 KIF20BQ96Q89 1820 aa10.14□□□□□ -0.79
SPG11-213ENST00000558988 NHSQ6T4R5 1651 aa10.13□□□□□ -0.79
SPG11-213ENST00000558988 SERTM1A2A2V5 107 aa10.13□□□□□ -0.79
SPG11-213ENST00000558988 F8W735 103 aaPredicted RBP10.13□□□□□ -0.79
SPG11-213ENST00000558988 CPB1P15086 417 aa10.13□□□□□ -0.79
SPG11-213ENST00000558988 GRIK1P39086 918 aa10.13□□□□□ -0.79
SPG11-213ENST00000558988 TMEM130Q8N3G9 435 aa10.13□□□□□ -0.79
SPG11-213ENST00000558988 LPIN3Q9BQK8 851 aa10.13□□□□□ -0.79
SPG11-213ENST00000558988 RGPD3A6NKT7 1758 aaPredicted RBP10.13□□□□□ -0.79
SPG11-213ENST00000558988 RGPD4Q7Z3J3 1758 aa10.13□□□□□ -0.79
SPG11-213ENST00000558988 FAM208AQ9UK61 1670 aaKnown RBP10.12□□□□□ -0.79
SPG11-213ENST00000558988 BTAF1O14981 1849 aa10.12□□□□□ -0.79
SPG11-213ENST00000558988 TNNT2P45379 298 aaPredicted RBP10.12□□□□□ -0.79
SPG11-213ENST00000558988 POU5F2Q8N7G0 328 aa10.12□□□□□ -0.79
SPG11-213ENST00000558988 BCL9O00512 1426 aa10.12□□□□□ -0.79
SPG11-213ENST00000558988 SMG6Q86US8 1419 aaKnown RBP10.12□□□□□ -0.79
SPG11-213ENST00000558988 MYOM1P52179 1685 aa10.12□□□□□ -0.79
SPG11-213ENST00000558988 HSP90AB2PQ58FF8 381 aa10.11□□□□□ -0.79
SPG11-213ENST00000558988 NBPF6Q5VWK0 638 aa10.11□□□□□ -0.79
SPG11-213ENST00000558988 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.11□□□□□ -0.79
SPG11-213ENST00000558988 RAPGEF4Q8WZA2 1011 aa10.11□□□□□ -0.79
SPG11-213ENST00000558988 NBPF4Q96M43 638 aa10.11□□□□□ -0.79
SPG11-213ENST00000558988 MRPL18Q9H0U6 180 aaKnown RBP10.11□□□□□ -0.79
SPG11-213ENST00000558988 GOPCQ9HD26 462 aa10.11□□□□□ -0.79
SPG11-213ENST00000558988 MEGF6O75095 1541 aa10.11□□□□□ -0.79
SPG11-213ENST00000558988 RTL1A6NKG5 1358 aa10.11□□□□□ -0.79
SPG11-213ENST00000558988 EPHA4P54764 986 aa10.1□□□□□ -0.79
SPG11-213ENST00000558988 SLC15A2Q16348 729 aa10.1□□□□□ -0.79
SPG11-213ENST00000558988 ZCRB1Q8TBF4 217 aaKnown RBP10.1□□□□□ -0.79
SPG11-213ENST00000558988 SUSD3Q96L08 255 aa10.1□□□□□ -0.79
SPG11-213ENST00000558988 EFCC1Q9HA90 598 aa10.1□□□□□ -0.79
SPG11-213ENST00000558988 ZNF358Q9NW07 568 aa10.1□□□□□ -0.79
SPG11-213ENST00000558988 DOT1LQ8TEK3 1739 aa10.1□□□□□ -0.79
SPG11-213ENST00000558988 HSPA5P11021 654 aaKnown RBP10.09□□□□□ -0.79
SPG11-213ENST00000558988 PERM1Q5SV97 790 aa10.09□□□□□ -0.79
SPG11-213ENST00000558988 GSX2Q9BZM3 304 aa10.09□□□□□ -0.79
SPG11-213ENST00000558988 FRRS1LQ9P0K9 344 aa10.09□□□□□ -0.79
SPG11-213ENST00000558988 TIMELESSQ9UNS1 1208 aa10.09□□□□□ -0.79
SPG11-213ENST00000558988 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.09□□□□□ -0.79
SPG11-213ENST00000558988 FLT4P35916 1363 aa10.09□□□□□ -0.79
SPG11-213ENST00000558988 CASZ1Q86V15 1759 aa10.09□□□□□ -0.79
SPG11-213ENST00000558988 CLSPNQ9HAW4 1339 aa10.08□□□□□ -0.8
SPG11-213ENST00000558988 ZNF827Q17R98 1081 aa10.08□□□□□ -0.8
SPG11-213ENST00000558988 C1orf53Q5VUE5 145 aa10.08□□□□□ -0.8
SPG11-213ENST00000558988 Q6ZS46 218 aa10.08□□□□□ -0.8
SPG11-213ENST00000558988 BANK1Q8NDB2 785 aa10.08□□□□□ -0.8
SPG11-213ENST00000558988 PNMA5Q96PV4 448 aa10.08□□□□□ -0.8
SPG11-213ENST00000558988 HCN4Q9Y3Q4 1203 aa10.08□□□□□ -0.8
SPG11-213ENST00000558988 CGNL1Q0VF96 1302 aa10.07□□□□□ -0.8
SPG11-213ENST00000558988 INSRP06213 1382 aa10.07□□□□□ -0.8
SPG11-213ENST00000558988 PRR19A6NJB7 356 aa10.07□□□□□ -0.8
SPG11-213ENST00000558988 GLB1P16278 677 aa10.07□□□□□ -0.8
SPG11-213ENST00000558988 NFKB1P19838 968 aa10.07□□□□□ -0.8
SPG11-213ENST00000558988 NFIAQ12857 509 aa10.07□□□□□ -0.8
SPG11-213ENST00000558988 ABI1Q8IZP0 508 aa10.07□□□□□ -0.8
SPG11-213ENST00000558988 TNS4Q8IZW8 715 aa10.07□□□□□ -0.8
SPG11-213ENST00000558988 AGGF1Q8N302 714 aaeCLIP10.07□□□□□ -0.8
SPG11-213ENST00000558988 ELMSAN1Q6PJG2 1045 aa10.06□□□□□ -0.8
SPG11-213ENST00000558988 SNRKQ9NRH2 765 aa10.06□□□□□ -0.8
SPG11-213ENST00000558988 TFCP2L1Q9NZI6 479 aa10.06□□□□□ -0.8
SPG11-213ENST00000558988 SHANK3Q9BYB0 1731 aa10.06□□□□□ -0.8
SPG11-213ENST00000558988 UBL7Q96S82 380 aaPredicted RBP10.05□□□□□ -0.8
SPG11-213ENST00000558988 PHACTR1Q9C0D0 580 aa10.05□□□□□ -0.8
SPG11-213ENST00000558988 MTFR1LQ9H019 292 aa10.05□□□□□ -0.8
SPG11-213ENST00000558988 CCNL1Q9UK58 526 aaPredicted RBP10.05□□□□□ -0.8
SPG11-213ENST00000558988 SRCAPQ6ZRS2 3230 aa10.05□□□□□ -0.8
SPG11-213ENST00000558988 PCDH11XQ9BZA7 1347 aa10.05□□□□□ -0.8
SPG11-213ENST00000558988 PCDH11YQ9BZA8 1340 aa10.05□□□□□ -0.8
SPG11-213ENST00000558988 PAPPAQ13219 1627 aa10.04□□□□□ -0.8
SPG11-213ENST00000558988 YY1P25490 414 aa10.04□□□□□ -0.8
SPG11-213ENST00000558988 FBLN7Q53RD9 439 aa10.04□□□□□ -0.8
SPG11-213ENST00000558988 MPRIPQ6WCQ1 1025 aa10.04□□□□□ -0.8
SPG11-213ENST00000558988 BTLAQ7Z6A9 289 aa10.04□□□□□ -0.8
SPG11-213ENST00000558988 PANK3Q9H999 370 aa10.04□□□□□ -0.8
SPG11-213ENST00000558988 NSD2O96028 1365 aa10.03□□□□□ -0.8
SPG11-213ENST00000558988 DHX15O43143 795 aaKnown RBP10.03□□□□□ -0.8
SPG11-213ENST00000558988 CNGB1Q14028 1251 aaPredicted RBP10.03□□□□□ -0.8
SPG11-213ENST00000558988 TTC9Q92623 222 aa10.03□□□□□ -0.8
SPG11-213ENST00000558988 MAP2P11137 1827 aaKnown RBP10.03□□□□□ -0.8
SPG11-213ENST00000558988 ZBTB42B2RXF5 422 aa10.02□□□□□ -0.81
SPG11-213ENST00000558988 APBB1O00213 710 aa10.02□□□□□ -0.81
SPG11-213ENST00000558988 CYP27B1O15528 508 aa10.02□□□□□ -0.81
SPG11-213ENST00000558988 CCINQ13939 588 aa10.02□□□□□ -0.81
SPG11-213ENST00000558988 PCSK7Q16549 785 aa10.02□□□□□ -0.81
SPG11-213ENST00000558988 ARXQ96QS3 562 aa10.02□□□□□ -0.81
SPG11-213ENST00000558988 POLKQ9UBT6 870 aa10.02□□□□□ -0.81
SPG11-213ENST00000558988 PNPLA7Q6ZV29 1317 aa10.02□□□□□ -0.81
SPG11-213ENST00000558988 KIF24Q5T7B8 1368 aa10.01□□□□□ -0.81
SPG11-213ENST00000558988 MORC1Q86VD1 984 aa10.01□□□□□ -0.81
SPG11-213ENST00000558988 ARMC10Q8N2F6 343 aa10.01□□□□□ -0.81
SPG11-213ENST00000558988 SPG7Q9UQ90 795 aa10.01□□□□□ -0.81
SPG11-213ENST00000558988 WASHC2AQ641Q2 1341 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms