RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 PCDHA7Q9UN72 937 aa12.92□□□□□ -0.34
CUX1-212ENST00000547394 CICQ96RK0 1608 aaPredicted RBP12.92□□□□□ -0.34
CUX1-212ENST00000547394 GNL2Q13823 731 aaKnown RBP12.92□□□□□ -0.34
CUX1-212ENST00000547394 SF3A1Q15459 793 aaKnown RBP12.92□□□□□ -0.34
CUX1-212ENST00000547394 KRT40Q6A162 431 aa12.92□□□□□ -0.34
CUX1-212ENST00000547394 C17orf53Q8N3J3 647 aaPredicted RBP12.92□□□□□ -0.34
CUX1-212ENST00000547394 NSUN4Q96CB9 384 aaKnown RBP12.92□□□□□ -0.34
CUX1-212ENST00000547394 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.92□□□□□ -0.34
CUX1-212ENST00000547394 IARSP41252 1262 aaKnown RBP12.91□□□□□ -0.34
CUX1-212ENST00000547394 KIF23Q02241 960 aaPredicted RBP12.91□□□□□ -0.34
CUX1-212ENST00000547394 WTAPQ15007 396 aa12.91□□□□□ -0.34
CUX1-212ENST00000547394 STK38Q15208 465 aa12.91□□□□□ -0.34
CUX1-212ENST00000547394 ALX1Q15699 326 aa12.91□□□□□ -0.34
CUX1-212ENST00000547394 NTRK3Q16288 839 aa12.91□□□□□ -0.34
CUX1-212ENST00000547394 CCDC192P0DO97 292 aa12.91□□□□□ -0.34
CUX1-212ENST00000547394 CLSTN2Q9H4D0 955 aa12.91□□□□□ -0.34
CUX1-212ENST00000547394 RCOR1Q9UKL0 485 aa12.91□□□□□ -0.34
CUX1-212ENST00000547394 TRPC5Q9UL62 973 aaPredicted RBP12.91□□□□□ -0.34
CUX1-212ENST00000547394 PNPLA7Q6ZV29 1317 aa12.91□□□□□ -0.34
CUX1-212ENST00000547394 BCORQ6W2J9 1755 aa12.91□□□□□ -0.34
CUX1-212ENST00000547394 BAZ2AQ9UIF9 1905 aaKnown RBP12.91□□□□□ -0.34
CUX1-212ENST00000547394 GYS1P13807 737 aa12.91□□□□□ -0.34
CUX1-212ENST00000547394 SPECC1Q5M775 1068 aa12.91□□□□□ -0.34
CUX1-212ENST00000547394 MYSM1Q5VVJ2 828 aa12.91□□□□□ -0.34
CUX1-212ENST00000547394 ISM2Q6H9L7 571 aa12.91□□□□□ -0.34
CUX1-212ENST00000547394 FBXL16Q8N461 479 aa12.91□□□□□ -0.34
CUX1-212ENST00000547394 UBAC1Q9BSL1 405 aa12.91□□□□□ -0.34
CUX1-212ENST00000547394 TNKSO95271 1327 aa12.9□□□□□ -0.34
CUX1-212ENST00000547394 CTR9Q6PD62 1173 aa12.9□□□□□ -0.34
CUX1-212ENST00000547394 STAG1Q8WVM7 1258 aa12.9□□□□□ -0.34
CUX1-212ENST00000547394 TMEM87BQ96K49 555 aa12.9□□□□□ -0.34
CUX1-212ENST00000547394 TTC12Q9H892 705 aaPredicted RBP12.9□□□□□ -0.34
CUX1-212ENST00000547394 USP17L8P0C7I0 530 aa12.9□□□□□ -0.34
CUX1-212ENST00000547394 NDUFA8P51970 172 aa12.9□□□□□ -0.34
CUX1-212ENST00000547394 SNW1Q13573 536 aaKnown RBP12.9□□□□□ -0.34
CUX1-212ENST00000547394 ZSCAN30Q86W11 494 aa12.9□□□□□ -0.34
CUX1-212ENST00000547394 ZNF396Q96N95 335 aaPredicted RBP12.9□□□□□ -0.34
CUX1-212ENST00000547394 MSNP26038 577 aaKnown RBP12.89□□□□□ -0.35
CUX1-212ENST00000547394 GPSM2P81274 684 aa12.89□□□□□ -0.35
CUX1-212ENST00000547394 DZIP1Q86YF9 867 aaKnown RBP12.89□□□□□ -0.35
CUX1-212ENST00000547394 RPGRQ92834 1020 aaKnown RBP12.89□□□□□ -0.35
CUX1-212ENST00000547394 DYNLL2Q96FJ2 89 aa12.89□□□□□ -0.35
CUX1-212ENST00000547394 CLIC6Q96NY7 704 aa12.89□□□□□ -0.35
CUX1-212ENST00000547394 KRT23Q9C075 422 aa12.89□□□□□ -0.35
CUX1-212ENST00000547394 TNRC6CQ9HCJ0 1690 aaKnown RBP12.89□□□□□ -0.35
CUX1-212ENST00000547394 ARAP2Q8WZ64 1704 aa12.89□□□□□ -0.35
CUX1-212ENST00000547394 ERICH2A1L162 156 aa12.89□□□□□ -0.35
CUX1-212ENST00000547394 BTBD18B2RXH4 712 aa12.89□□□□□ -0.35
CUX1-212ENST00000547394 BIN1O00499 593 aa12.89□□□□□ -0.35
CUX1-212ENST00000547394 LETM1O95202 739 aaPredicted RBP12.89□□□□□ -0.35
CUX1-212ENST00000547394 SERPINB2P05120 415 aa12.89□□□□□ -0.35
CUX1-212ENST00000547394 GNAT2P19087 354 aa12.89□□□□□ -0.35
CUX1-212ENST00000547394 CLCN1P35523 988 aa12.89□□□□□ -0.35
CUX1-212ENST00000547394 DDR1Q08345 913 aa12.89□□□□□ -0.35
CUX1-212ENST00000547394 NR5A1Q13285 461 aa12.89□□□□□ -0.35
CUX1-212ENST00000547394 RTN1Q16799 776 aa12.89□□□□□ -0.35
CUX1-212ENST00000547394 SYNE3Q6ZMZ3 975 aa12.89□□□□□ -0.35
CUX1-212ENST00000547394 C11orf57Q6ZUT1 292 aaPredicted RBP12.89□□□□□ -0.35
CUX1-212ENST00000547394 ZNF654Q8IZM8 581 aa12.89□□□□□ -0.35
CUX1-212ENST00000547394 PROM2Q8N271 834 aa12.89□□□□□ -0.35
CUX1-212ENST00000547394 ENAHQ8N8S7 591 aaPredicted RBP12.89□□□□□ -0.35
CUX1-212ENST00000547394 LINC00301Q8NCQ3 95 aa12.89□□□□□ -0.35
CUX1-212ENST00000547394 BCL11BQ9C0K0 894 aaPredicted RBP12.89□□□□□ -0.35
CUX1-212ENST00000547394 CBX8Q9HC52 389 aa12.89□□□□□ -0.35
CUX1-212ENST00000547394 WDHD1O75717 1129 aaPredicted RBP12.88□□□□□ -0.35
CUX1-212ENST00000547394 PLEKHA8P1O95397 391 aa12.88□□□□□ -0.35
CUX1-212ENST00000547394 MSL1Q68DK7 614 aa12.88□□□□□ -0.35
CUX1-212ENST00000547394 CCDC73Q6ZRK6 1079 aa12.88□□□□□ -0.35
CUX1-212ENST00000547394 OXER1Q8TDS5 423 aa12.88□□□□□ -0.35
CUX1-212ENST00000547394 NAP1L5Q96NT1 182 aaPredicted RBP12.88□□□□□ -0.35
CUX1-212ENST00000547394 DDX19AQ9NUU7 478 aaKnown RBP12.88□□□□□ -0.35
CUX1-212ENST00000547394 SAP30BPQ9UHR5 308 aaKnown RBP12.88□□□□□ -0.35
CUX1-212ENST00000547394 FAM205CA6NFA0 338 aa12.88□□□□□ -0.35
CUX1-212ENST00000547394 UFL1O94874 794 aa12.88□□□□□ -0.35
CUX1-212ENST00000547394 SSRP1Q08945 709 aaKnown RBP12.88□□□□□ -0.35
CUX1-212ENST00000547394 SASS6Q6UVJ0 657 aa12.88□□□□□ -0.35
CUX1-212ENST00000547394 SGMS1Q86VZ5 419 aa12.88□□□□□ -0.35
CUX1-212ENST00000547394 SLC44A5Q8NCS7 719 aa12.88□□□□□ -0.35
CUX1-212ENST00000547394 CNNM2Q9H8M5 875 aa12.88□□□□□ -0.35
CUX1-212ENST00000547394 DCP1AQ9NPI6 582 aaPredicted RBP12.88□□□□□ -0.35
CUX1-212ENST00000547394 MCM9Q9NXL9 1143 aa12.88□□□□□ -0.35
CUX1-212ENST00000547394 LAMB2P55268 1798 aa12.88□□□□□ -0.35
CUX1-212ENST00000547394 MROH7-TTC4A0A0A0MT08 1334 aa12.87□□□□□ -0.35
CUX1-212ENST00000547394 RIMBP2O15034 1052 aa12.87□□□□□ -0.35
CUX1-212ENST00000547394 SPTLC2O15270 562 aa12.87□□□□□ -0.35
CUX1-212ENST00000547394 PDIA4P13667 645 aaKnown RBP12.87□□□□□ -0.35
CUX1-212ENST00000547394 GRAPQ13588 217 aa12.87□□□□□ -0.35
CUX1-212ENST00000547394 GRAPLQ8TC17 118 aaPredicted RBP12.87□□□□□ -0.35
CUX1-212ENST00000547394 ANKRD2Q9GZV1 360 aa12.87□□□□□ -0.35
CUX1-212ENST00000547394 MYH13Q9UKX3 1938 aa12.87□□□□□ -0.35
CUX1-212ENST00000547394 SART3Q15020 963 aaKnown RBP12.87□□□□□ -0.35
CUX1-212ENST00000547394 CPLX2Q6PUV4 134 aaKnown RBP12.87□□□□□ -0.35
CUX1-212ENST00000547394 RASGRP2Q7LDG7 609 aa12.87□□□□□ -0.35
CUX1-212ENST00000547394 KRT27Q7Z3Y8 459 aa12.87□□□□□ -0.35
CUX1-212ENST00000547394 SH3RF3Q8TEJ3 882 aaPredicted RBP12.87□□□□□ -0.35
CUX1-212ENST00000547394 SHISA4Q96DD7 197 aa12.87□□□□□ -0.35
CUX1-212ENST00000547394 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.87□□□□□ -0.351e-9■■□□□ 12.2
CUX1-212ENST00000547394 CASZ1Q86V15 1759 aa12.87□□□□□ -0.35
CUX1-212ENST00000547394 C4AP0C0L4 1744 aa12.87□□□□□ -0.35
CUX1-212ENST00000547394 SCN7AQ01118 1682 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms