RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, human

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-213	ENST00000542641	ZNF589	Q86UQ0	364 aa	Predicted RBP	13.9	□□□□□ -0.18
YBX3-213	ENST00000542641	LDHD	Q86WU2	507 aa		13.9	□□□□□ -0.18
YBX3-213	ENST00000542641	SDR42E1	Q8WUS8	393 aa		13.9	□□□□□ -0.18
YBX3-213	ENST00000542641	IDI2	Q9BXS1	227 aa		13.9	□□□□□ -0.18
YBX3-213	ENST00000542641	SCAF8	Q9UPN6	1271 aa	Known RBP	13.9	□□□□□ -0.18
YBX3-213	ENST00000542641	MYH7	P12883	1935 aa		13.9	□□□□□ -0.18
YBX3-213	ENST00000542641	AK9	Q5TCS8	1911 aa		13.9	□□□□□ -0.18
YBX3-213	ENST00000542641	CCDC171	Q6TFL3	1326 aa		13.9	□□□□□ -0.19
YBX3-213	ENST00000542641	RAD50	Q92878	1312 aa		13.9	□□□□□ -0.19
YBX3-213	ENST00000542641	PITPNM2	Q9BZ72	1349 aa		13.9	□□□□□ -0.19
YBX3-213	ENST00000542641	PATL2	C9JE40	543 aa	Known RBP	13.89	□□□□□ -0.19
YBX3-213	ENST00000542641	SGSM2	O43147	1006 aa		13.89	□□□□□ -0.19
YBX3-213	ENST00000542641	TCP10	Q12799	353 aa		13.89	□□□□□ -0.19
YBX3-213	ENST00000542641	FAM83A	Q86UY5	434 aa		13.89	□□□□□ -0.19
YBX3-213	ENST00000542641	MAPKAPK5	Q8IW41	473 aa		13.89	□□□□□ -0.19
YBX3-213	ENST00000542641	SULF1	Q8IWU6	871 aa		13.89	□□□□□ -0.19
YBX3-213	ENST00000542641	ESYT1	Q9BSJ8	1104 aa		13.89	□□□□□ -0.19
YBX3-213	ENST00000542641	IL25	Q9H293	177 aa		13.89	□□□□□ -0.19
YBX3-213	ENST00000542641	DDX4	Q9NQI0	724 aa	Known RBP	13.89	□□□□□ -0.19
YBX3-213	ENST00000542641	FAM198A	Q9UFP1	575 aa		13.89	□□□□□ -0.19
YBX3-213	ENST00000542641	GSG1L2	A8MUP6	293 aa		13.88	□□□□□ -0.19
YBX3-213	ENST00000542641	KIF3C	O14782	793 aa		13.88	□□□□□ -0.19
YBX3-213	ENST00000542641	ENTPD3	O75355	529 aa		13.88	□□□□□ -0.19
YBX3-213	ENST00000542641	RASA3	Q14644	834 aa		13.88	□□□□□ -0.19
YBX3-213	ENST00000542641	MAP1S	Q66K74	1059 aa	Predicted RBP	13.88	□□□□□ -0.19
YBX3-213	ENST00000542641	KIAA1211	Q6ZU35	1233 aa		13.88	□□□□□ -0.19
YBX3-213	ENST00000542641	KRT26	Q7Z3Y9	468 aa		13.88	□□□□□ -0.19
YBX3-213	ENST00000542641	USP48	Q86UV5	1035 aa		13.88	□□□□□ -0.19
YBX3-213	ENST00000542641	FAM151A	Q8WW52	585 aa		13.88	□□□□□ -0.19
YBX3-213	ENST00000542641	DDRGK1	Q96HY6	314 aa		13.88	□□□□□ -0.19
YBX3-213	ENST00000542641	DEFB129	Q9H1M3	183 aa		13.88	□□□□□ -0.19
YBX3-213	ENST00000542641	ATP8A2	Q9NTI2	1148 aa		13.88	□□□□□ -0.19
YBX3-213	ENST00000542641	FLT1	P17948	1338 aa		13.88	□□□□□ -0.19
YBX3-213	ENST00000542641	HSPD1	P10809	573 aa	Known RBP	13.87	□□□□□ -0.19
YBX3-213	ENST00000542641	VPS53	Q5VIR6	699 aa		13.87	□□□□□ -0.19
YBX3-213	ENST00000542641	CHADL	Q6NUI6	762 aa		13.87	□□□□□ -0.19
YBX3-213	ENST00000542641	CDC37L1	Q7L3B6	337 aa		13.87	□□□□□ -0.19
YBX3-213	ENST00000542641	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	13.87	□□□□□ -0.19
YBX3-213	ENST00000542641	ZFPM1	Q8IX07	1006 aa		13.87	□□□□□ -0.19
YBX3-213	ENST00000542641	IFNL3	Q8IZI9	196 aa		13.87	□□□□□ -0.19
YBX3-213	ENST00000542641	NACAP1	Q9BZK3	213 aa		13.87	□□□□□ -0.19
YBX3-213	ENST00000542641	TMEM39B	Q9GZU3	492 aa		13.87	□□□□□ -0.19
YBX3-213	ENST00000542641	OSBPL5	Q9H0X9	879 aa	Predicted RBP	13.87	□□□□□ -0.19
YBX3-213	ENST00000542641	DCP1A	Q9NPI6	582 aa	Predicted RBP	13.87	□□□□□ -0.19
YBX3-213	ENST00000542641	CNTNAP1	P78357	1384 aa		13.86	□□□□□ -0.19
YBX3-213	ENST00000542641	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.86	□□□□□ -0.19
YBX3-213	ENST00000542641	ADM5	C9JUS6	153 aa		13.86	□□□□□ -0.19
YBX3-213	ENST00000542641	TDO2	P48775	406 aa		13.86	□□□□□ -0.19
YBX3-213	ENST00000542641	GIMAP6	Q6P9H5	292 aa		13.86	□□□□□ -0.19
YBX3-213	ENST00000542641	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.86	□□□□□ -0.19
YBX3-213	ENST00000542641	MCM9	Q9NXL9	1143 aa		13.86	□□□□□ -0.19
YBX3-213	ENST00000542641	MKRN1	Q9UHC7	482 aa	Known RBP	13.86	□□□□□ -0.19
YBX3-213	ENST00000542641	SAP30BP	Q9UHR5	308 aa	Known RBP	13.86	□□□□□ -0.19
YBX3-213	ENST00000542641	PPP2R3B	Q9Y5P8	575 aa		13.86	□□□□□ -0.19
YBX3-213	ENST00000542641	FOXP2	O15409	715 aa		13.85	□□□□□ -0.19
YBX3-213	ENST00000542641	TOMM70	O94826	608 aa		13.85	□□□□□ -0.19
YBX3-213	ENST00000542641	POLR3D	P05423	398 aa	Predicted RBP	13.85	□□□□□ -0.19
YBX3-213	ENST00000542641	PRAMEF18	Q5VWM3	479 aa		13.85	□□□□□ -0.19
YBX3-213	ENST00000542641	DLK2	Q6UY11	383 aa		13.85	□□□□□ -0.19
YBX3-213	ENST00000542641	AMOTL1	Q8IY63	956 aa		13.85	□□□□□ -0.19
YBX3-213	ENST00000542641	DSCC1	Q9BVC3	393 aa		13.85	□□□□□ -0.19
YBX3-213	ENST00000542641	NAPB	Q9H115	298 aa		13.85	□□□□□ -0.19
YBX3-213	ENST00000542641	DHX36	Q9H2U1	1008 aa	Known RBP	13.85	□□□□□ -0.19
YBX3-213	ENST00000542641	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	13.85	□□□□□ -0.19
YBX3-213	ENST00000542641	ANO2	Q9NQ90	1003 aa		13.85	□□□□□ -0.19
YBX3-213	ENST00000542641	PALD1	Q9ULE6	856 aa		13.85	□□□□□ -0.19
YBX3-213	ENST00000542641	DDTL	A6NHG4	134 aa	Predicted RBP	13.84	□□□□□ -0.19
YBX3-213	ENST00000542641	USP17L12	C9JPN9	530 aa		13.84	□□□□□ -0.19
YBX3-213	ENST00000542641	USP17L21	D6R901	530 aa		13.84	□□□□□ -0.19
YBX3-213	ENST00000542641	FGA	P02671	866 aa		13.84	□□□□□ -0.19
YBX3-213	ENST00000542641	PTH1R	Q03431	593 aa		13.84	□□□□□ -0.19
YBX3-213	ENST00000542641	ALX1	Q15699	326 aa		13.84	□□□□□ -0.19
YBX3-213	ENST00000542641	SLC4A8	Q2Y0W8	1093 aa		13.84	□□□□□ -0.19
YBX3-213	ENST00000542641	CTR9	Q6PD62	1173 aa		13.84	□□□□□ -0.19
YBX3-213	ENST00000542641	SMC1B	Q8NDV3	1235 aa		13.84	□□□□□ -0.19
YBX3-213	ENST00000542641	CSRNP1	Q96S65	589 aa		13.84	□□□□□ -0.19
YBX3-213	ENST00000542641	TRAF5	O00463	557 aa		13.83	□□□□□ -0.2
YBX3-213	ENST00000542641	REC8	O95072	547 aa		13.83	□□□□□ -0.2
YBX3-213	ENST00000542641	HLA-DOA	P06340	250 aa		13.83	□□□□□ -0.2
YBX3-213	ENST00000542641	SUPT20HL1	Q3ZLR7	823 aa		13.83	□□□□□ -0.2
YBX3-213	ENST00000542641	C8orf34	Q49A92	452 aa		13.83	□□□□□ -0.2
YBX3-213	ENST00000542641	NBPF12	Q5TAG4	269 aa	Predicted RBP	13.83	□□□□□ -0.2
YBX3-213	ENST00000542641	SH3BP5L	Q7L8J4	393 aa		13.83	□□□□□ -0.2
YBX3-213	ENST00000542641	TTC6	Q86TZ1	520 aa		13.83	□□□□□ -0.2
YBX3-213	ENST00000542641	CDAN1	Q8IWY9	1227 aa		13.83	□□□□□ -0.2
YBX3-213	ENST00000542641	RBM46	Q8TBY0	533 aa	Known RBP	13.83	□□□□□ -0.2
YBX3-213	ENST00000542641	CDCA5	Q96FF9	252 aa		13.83	□□□□□ -0.2
YBX3-213	ENST00000542641	TEPSIN	Q96N21	525 aa		13.83	□□□□□ -0.2
YBX3-213	ENST00000542641	LSG1	Q9H089	658 aa	Known RBP	13.83	□□□□□ -0.2
YBX3-213	ENST00000542641	ARPP21	Q9UBL0	812 aa	Predicted RBP	13.83	□□□□□ -0.2
YBX3-213	ENST00000542641	CTNNA3	Q9UI47	895 aa		13.83	□□□□□ -0.2
YBX3-213	ENST00000542641	ECM29	Q5VYK3	1845 aa		13.83	□□□□□ -0.2
YBX3-213	ENST00000542641	CYP2D7	A0A087X1C5	515 aa		13.82	□□□□□ -0.2
YBX3-213	ENST00000542641	MINDY4B	A8MYZ0	360 aa		13.82	□□□□□ -0.2
YBX3-213	ENST00000542641	EIF5B	O60841	1220 aa	Known RBP	13.82	□□□□□ -0.2
YBX3-213	ENST00000542641	ITGBL1	O95965	494 aa	Predicted RBP	13.82	□□□□□ -0.2
YBX3-213	ENST00000542641	CYP2D6	P10635	497 aa		13.82	□□□□□ -0.2
YBX3-213	ENST00000542641	SBK1	Q52WX2	424 aa		13.82	□□□□□ -0.2
YBX3-213	ENST00000542641	C12orf60	Q5U649	245 aa		13.82	□□□□□ -0.2
YBX3-213	ENST00000542641	MAP4K1	Q92918	833 aa		13.82	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms