RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 HAUS7Q99871 368 aa13.05□□□□□ -0.32
HMGA2-209ENST00000539662 TCRBV5S4A2TA0A5A2 114 aa13.04□□□□□ -0.32
HMGA2-209ENST00000539662 FAM196BA6NMK8 535 aa13.04□□□□□ -0.32
HMGA2-209ENST00000539662 ENTPD3O75355 529 aa13.04□□□□□ -0.32
HMGA2-209ENST00000539662 MAP4K4O95819 1239 aaPredicted RBP13.04□□□□□ -0.32
HMGA2-209ENST00000539662 PDE6AP16499 860 aa13.04□□□□□ -0.32
HMGA2-209ENST00000539662 INPP5BP32019 993 aa13.04□□□□□ -0.32
HMGA2-209ENST00000539662 IREB2P48200 963 aaKnown RBP13.04□□□□□ -0.32
HMGA2-209ENST00000539662 PPP4CP60510 307 aa13.04□□□□□ -0.32
HMGA2-209ENST00000539662 VGLL4Q14135 290 aa13.04□□□□□ -0.32
HMGA2-209ENST00000539662 COL13A1Q5TAT6 717 aaPredicted RBP13.04□□□□□ -0.32
HMGA2-209ENST00000539662 ANKRD45Q5TZF3 282 aa13.04□□□□□ -0.32
HMGA2-209ENST00000539662 SPRYD7Q5W111 196 aa13.04□□□□□ -0.32
HMGA2-209ENST00000539662 TEX11Q8IYF3 940 aa13.04□□□□□ -0.32
HMGA2-209ENST00000539662 SLC10A4Q96EP9 437 aa13.04□□□□□ -0.32
HMGA2-209ENST00000539662 WNK4Q96J92 1243 aa13.04□□□□□ -0.32
HMGA2-209ENST00000539662 ECHDC1Q9NTX5 307 aa13.04□□□□□ -0.32
HMGA2-209ENST00000539662 PAG1Q9NWQ8 432 aa13.04□□□□□ -0.32
HMGA2-209ENST00000539662 SALL3Q9BXA9 1300 aa13.04□□□□□ -0.32
HMGA2-209ENST00000539662 HSPA8P11142 646 aaKnown RBP13.03□□□□□ -0.32
HMGA2-209ENST00000539662 LBX1P52954 281 aa13.03□□□□□ -0.32
HMGA2-209ENST00000539662 MAP3K9P80192 1104 aa13.03□□□□□ -0.32
HMGA2-209ENST00000539662 MAP2K1Q02750 393 aaPredicted RBP13.03□□□□□ -0.32
HMGA2-209ENST00000539662 EVX2Q03828 476 aa13.03□□□□□ -0.32
HMGA2-209ENST00000539662 SLC4A8Q2Y0W8 1093 aa13.03□□□□□ -0.32
HMGA2-209ENST00000539662 SLC9C2Q5TAH2 1124 aa13.03□□□□□ -0.32
HMGA2-209ENST00000539662 B4GALNT3Q6L9W6 998 aa13.03□□□□□ -0.32
HMGA2-209ENST00000539662 MAPKAPK5Q8IW41 473 aa13.03□□□□□ -0.32
HMGA2-209ENST00000539662 ANKRD13AQ8IZ07 590 aa13.03□□□□□ -0.32
HMGA2-209ENST00000539662 TGFBRAP1Q8WUH2 860 aa13.03□□□□□ -0.32
HMGA2-209ENST00000539662 WRNIP1Q96S55 665 aa13.03□□□□□ -0.32
HMGA2-209ENST00000539662 RIOK1Q9BRS2 568 aaKnown RBP13.03□□□□□ -0.32
HMGA2-209ENST00000539662 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.03□□□□□ -0.32
HMGA2-209ENST00000539662 SNCAIPQ9Y6H5 919 aa13.03□□□□□ -0.32
HMGA2-209ENST00000539662 ZNF532Q9HCE3 1301 aa13.03□□□□□ -0.32
HMGA2-209ENST00000539662 MYH7P12883 1935 aa13.03□□□□□ -0.32
HMGA2-209ENST00000539662 LAMB1P07942 1786 aa13.02□□□□□ -0.32
HMGA2-209ENST00000539662 PHF20L1A8MW92 1017 aa13.02□□□□□ -0.33
HMGA2-209ENST00000539662 MAP3K12Q12852 859 aa13.02□□□□□ -0.33
HMGA2-209ENST00000539662 RRP1BQ14684 758 aaKnown RBP13.02□□□□□ -0.33
HMGA2-209ENST00000539662 ZSCAN29Q8IWY8 852 aaPredicted RBP13.02□□□□□ -0.33
HMGA2-209ENST00000539662 PI4K2BQ8TCG2 481 aa13.02□□□□□ -0.33
HMGA2-209ENST00000539662 OPTNQ96CV9 577 aa13.02□□□□□ -0.33
HMGA2-209ENST00000539662 OSBPL5Q9H0X9 879 aaPredicted RBP13.02□□□□□ -0.33
HMGA2-209ENST00000539662 RNF186Q9NXI6 227 aa13.02□□□□□ -0.33
HMGA2-209ENST00000539662 FLT1P17948 1338 aa13.02□□□□□ -0.33
HMGA2-209ENST00000539662 TTF1Q15361 905 aaPredicted RBP13.01□□□□□ -0.33
HMGA2-209ENST00000539662 SMC5Q8IY18 1101 aa13.01□□□□□ -0.33
HMGA2-209ENST00000539662 ZNF341Q9BYN7 854 aa13.01□□□□□ -0.33
HMGA2-209ENST00000539662 R3HDMLQ9H3Y0 253 aa13.01□□□□□ -0.33
HMGA2-209ENST00000539662 SAP30BPQ9UHR5 308 aaKnown RBP13.01□□□□□ -0.33
HMGA2-209ENST00000539662 ZNF112Q9UJU3 913 aa13.01□□□□□ -0.33
HMGA2-209ENST00000539662 MYH1P12882 1939 aa13□□□□□ -0.33
HMGA2-209ENST00000539662 NPM3O75607 178 aaKnown RBP13□□□□□ -0.33
HMGA2-209ENST00000539662 TRPA1O75762 1119 aa13□□□□□ -0.33
HMGA2-209ENST00000539662 BAG3O95817 575 aa13□□□□□ -0.33
HMGA2-209ENST00000539662 ADD2P35612 726 aa13□□□□□ -0.33
HMGA2-209ENST00000539662 MAP3K10Q02779 954 aa13□□□□□ -0.33
HMGA2-209ENST00000539662 SHROOM1Q2M3G4 852 aaPredicted RBP13□□□□□ -0.33
HMGA2-209ENST00000539662 CCDC84Q86UT8 332 aaPredicted RBP13□□□□□ -0.33
HMGA2-209ENST00000539662 LCORLQ8N3X6 602 aa13□□□□□ -0.33
HMGA2-209ENST00000539662 AIDAQ96BJ3 306 aa13□□□□□ -0.33
HMGA2-209ENST00000539662 GCC1Q96CN9 775 aa13□□□□□ -0.33
HMGA2-209ENST00000539662 OTUD5Q96G74 571 aa13□□□□□ -0.33
HMGA2-209ENST00000539662 PTPN18Q99952 460 aa13□□□□□ -0.33
HMGA2-209ENST00000539662 NOL10Q9BSC4 688 aaKnown RBP13□□□□□ -0.33
HMGA2-209ENST00000539662 LNPKQ9C0E8 428 aa13□□□□□ -0.33
HMGA2-209ENST00000539662 PALD1Q9ULE6 856 aa13□□□□□ -0.33
HMGA2-209ENST00000539662 CASP8AP2Q9UKL3 1982 aa13□□□□□ -0.33
HMGA2-209ENST00000539662 DDX60LQ5H9U9 1706 aaKnown RBP12.99□□□□□ -0.33
HMGA2-209ENST00000539662 MAGEB6P1A0A0J9YX57 407 aa12.99□□□□□ -0.33
HMGA2-209ENST00000539662 SMIM22K7EJ46 135 aa12.99□□□□□ -0.33
HMGA2-209ENST00000539662 IGF2BP3O00425 579 aaKnown RBP eCLIP12.99□□□□□ -0.33
HMGA2-209ENST00000539662 PRKAB2O43741 272 aa12.99□□□□□ -0.33
HMGA2-209ENST00000539662 TM4SF4P48230 202 aa12.99□□□□□ -0.33
HMGA2-209ENST00000539662 CTCFP49711 727 aaPredicted RBP12.99□□□□□ -0.33
HMGA2-209ENST00000539662 JAG1P78504 1218 aa12.99□□□□□ -0.33
HMGA2-209ENST00000539662 DCAF15Q66K64 600 aa12.99□□□□□ -0.33
HMGA2-209ENST00000539662 MS4A4AQ96JQ5 239 aa12.99□□□□□ -0.33
HMGA2-209ENST00000539662 RWDD1Q9H446 243 aaPredicted RBP12.99□□□□□ -0.33
HMGA2-209ENST00000539662 DNAJC18Q9H819 358 aa12.99□□□□□ -0.33
HMGA2-209ENST00000539662 ARMT1Q9H993 441 aa12.99□□□□□ -0.33
HMGA2-209ENST00000539662 PHIPQ8WWQ0 1821 aa12.99□□□□□ -0.33
HMGA2-209ENST00000539662 NAV1Q8NEY1 1877 aa12.98□□□□□ -0.33
HMGA2-209ENST00000539662 ATAD5Q96QE3 1844 aa12.98□□□□□ -0.33
HMGA2-209ENST00000539662 SPDYE5A6NIY4 337 aa12.98□□□□□ -0.33
HMGA2-209ENST00000539662 TBC1D8O95759 1140 aa12.98□□□□□ -0.33
HMGA2-209ENST00000539662 MX1P20591 662 aa12.98□□□□□ -0.33
HMGA2-209ENST00000539662 AAMPQ13685 434 aa12.98□□□□□ -0.33
HMGA2-209ENST00000539662 SDR42E1Q8WUS8 393 aa12.98□□□□□ -0.33
HMGA2-209ENST00000539662 PUS7LQ9H0K6 701 aaKnown RBP12.98□□□□□ -0.33
HMGA2-209ENST00000539662 RTN4Q9NQC3 1192 aaKnown RBP12.98□□□□□ -0.33
HMGA2-209ENST00000539662 CSADQ9Y600 493 aa12.98□□□□□ -0.33
HMGA2-209ENST00000539662 COL2A1P02458 1487 aaPredicted RBP12.97□□□□□ -0.33
HMGA2-209ENST00000539662 DOCK1Q14185 1865 aa12.97□□□□□ -0.33
HMGA2-209ENST00000539662 TTC41PQ6P2S7 1318 aa12.97□□□□□ -0.33
HMGA2-209ENST00000539662 UNCXA6NJT0 531 aa12.97□□□□□ -0.33
HMGA2-209ENST00000539662 IRF6O14896 467 aa12.97□□□□□ -0.33
HMGA2-209ENST00000539662 IGSF3O75054 1194 aa12.97□□□□□ -0.33
HMGA2-209ENST00000539662 MBD4O95243 580 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms