RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 TLR6Q9Y2C9 796 aa6.83□□□□□ -1.32
CD44-236ENST00000533222 SH3BP1Q9Y3L3 701 aa6.83□□□□□ -1.32
CD44-236ENST00000533222 NCAPD3P42695 1498 aa6.83□□□□□ -1.32
CD44-236ENST00000533222 ZSCAN20P17040 1043 aaPredicted RBP6.82□□□□□ -1.32
CD44-236ENST00000533222 MAP2K1Q02750 393 aaPredicted RBP6.82□□□□□ -1.32
CD44-236ENST00000533222 PPP2R3AQ06190 1150 aa6.82□□□□□ -1.32
CD44-236ENST00000533222 HDAC1Q13547 482 aaPredicted RBP6.82□□□□□ -1.32
CD44-236ENST00000533222 DUOXA2Q1HG44 320 aa6.82□□□□□ -1.32
CD44-236ENST00000533222 SV2BQ7L1I2 683 aa6.82□□□□□ -1.32
CD44-236ENST00000533222 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.82□□□□□ -1.32
CD44-236ENST00000533222 WDR89Q96FK6 387 aaPredicted RBP6.82□□□□□ -1.32
CD44-236ENST00000533222 CCDC86Q9H6F5 360 aaKnown RBP6.82□□□□□ -1.32
CD44-236ENST00000533222 CWC22Q9HCG8 908 aaKnown RBP6.82□□□□□ -1.32
CD44-236ENST00000533222 RRAGDQ9NQL2 400 aaPredicted RBP6.82□□□□□ -1.32
CD44-236ENST00000533222 F8W735 103 aaPredicted RBP6.81□□□□□ -1.32
CD44-236ENST00000533222 GOLIM4O00461 696 aa6.81□□□□□ -1.32
CD44-236ENST00000533222 KIF1CO43896 1103 aaKnown RBP6.81□□□□□ -1.32
CD44-236ENST00000533222 GSTP1P09211 210 aaKnown RBP6.81□□□□□ -1.32
CD44-236ENST00000533222 NME2P22392 152 aa6.81□□□□□ -1.32
CD44-236ENST00000533222 LIG3P49916 1009 aa6.81□□□□□ -1.32
CD44-236ENST00000533222 HDLBPQ00341 1268 aaKnown RBP6.81□□□□□ -1.32
CD44-236ENST00000533222 KCNMA1Q12791 1236 aa6.81□□□□□ -1.32
CD44-236ENST00000533222 TTBK2Q6IQ55 1244 aa6.81□□□□□ -1.32
CD44-236ENST00000533222 IGF2-ASQ6U949 168 aa6.81□□□□□ -1.32
CD44-236ENST00000533222 CD163Q86VB7 1156 aa6.81□□□□□ -1.32
CD44-236ENST00000533222 SNRNP27Q8WVK2 155 aaKnown RBP6.81□□□□□ -1.32
CD44-236ENST00000533222 FAM210AQ96ND0 272 aa6.81□□□□□ -1.32
CD44-236ENST00000533222 CBX8Q9HC52 389 aa6.81□□□□□ -1.32
CD44-236ENST00000533222 USP21Q9UK80 565 aa6.81□□□□□ -1.32
CD44-236ENST00000533222 NUB1Q9Y5A7 615 aa6.81□□□□□ -1.32
CD44-236ENST00000533222 PHLDB1Q86UU1 1377 aa6.81□□□□□ -1.32
CD44-236ENST00000533222 NINLQ9Y2I6 1382 aa6.81□□□□□ -1.32
CD44-236ENST00000533222 ZNF862O60290 1169 aa6.8□□□□□ -1.32
CD44-236ENST00000533222 APBA3O96018 575 aa6.8□□□□□ -1.32
CD44-236ENST00000533222 ARNTP27540 789 aa6.8□□□□□ -1.32
CD44-236ENST00000533222 NOS3P29474 1203 aa6.8□□□□□ -1.32
CD44-236ENST00000533222 ZNF76P36508 570 aa6.8□□□□□ -1.32
CD44-236ENST00000533222 ZNF252P-AS1Q0IIN9 211 aa6.8□□□□□ -1.32
CD44-236ENST00000533222 AP3B2Q13367 1082 aa6.8□□□□□ -1.32
CD44-236ENST00000533222 MBTPS1Q14703 1052 aa6.8□□□□□ -1.32
CD44-236ENST00000533222 ZNF394Q53GI3 561 aa6.8□□□□□ -1.32
CD44-236ENST00000533222 MAP1SQ66K74 1059 aaPredicted RBP6.8□□□□□ -1.32
CD44-236ENST00000533222 ERMP1Q7Z2K6 904 aa6.8□□□□□ -1.32
CD44-236ENST00000533222 METTL16Q86W50 562 aaKnown RBP6.8□□□□□ -1.32
CD44-236ENST00000533222 TMTC2Q8N394 836 aa6.8□□□□□ -1.32
CD44-236ENST00000533222 KCNB2Q92953 911 aa6.8□□□□□ -1.32
CD44-236ENST00000533222 LENG1Q96BZ8 264 aaPredicted RBP6.8□□□□□ -1.32
CD44-236ENST00000533222 CORO1BQ9BR76 489 aa6.8□□□□□ -1.32
CD44-236ENST00000533222 NOC4LQ9BVI4 516 aaKnown RBP6.8□□□□□ -1.32
CD44-236ENST00000533222 MRPL18Q9H0U6 180 aaKnown RBP6.8□□□□□ -1.32
CD44-236ENST00000533222 KBTBD4Q9NVX7 518 aa6.8□□□□□ -1.32
CD44-236ENST00000533222 GGT7Q9UJ14 662 aa6.8□□□□□ -1.32
CD44-236ENST00000533222 PCDHB5Q9Y5E4 795 aa6.8□□□□□ -1.32
CD44-236ENST00000533222 PCDHGB7Q9Y5F8 929 aa6.8□□□□□ -1.32
CD44-236ENST00000533222 UNC13AQ9UPW8 1703 aa6.79□□□□□ -1.32
CD44-236ENST00000533222 C1QTNF9BB2RNN3 333 aa6.79□□□□□ -1.32
CD44-236ENST00000533222 HMGB1P1B2RPK0 211 aaPredicted RBP6.79□□□□□ -1.32
CD44-236ENST00000533222 E9PSI1 815 aa6.79□□□□□ -1.32
CD44-236ENST00000533222 DYNC1I1O14576 645 aa6.79□□□□□ -1.32
CD44-236ENST00000533222 SCAMP3O14828 347 aaKnown RBP6.79□□□□□ -1.32
CD44-236ENST00000533222 CYP11A1P05108 521 aa6.79□□□□□ -1.32
CD44-236ENST00000533222 LIG1P18858 919 aa6.79□□□□□ -1.32
CD44-236ENST00000533222 TFE3P19532 575 aaPredicted RBP6.79□□□□□ -1.32
CD44-236ENST00000533222 PTPN11Q06124 597 aaPredicted RBP6.79□□□□□ -1.32
CD44-236ENST00000533222 SEPT6Q14141 434 aa6.79□□□□□ -1.32
CD44-236ENST00000533222 PDE3AQ14432 1141 aa6.79□□□□□ -1.32
CD44-236ENST00000533222 PHC3Q8NDX5 983 aa6.79□□□□□ -1.32
CD44-236ENST00000533222 GAL3ST3Q96A11 431 aa6.79□□□□□ -1.32
CD44-236ENST00000533222 RUSC1Q9BVN2 902 aa6.79□□□□□ -1.32
CD44-236ENST00000533222 CCDC94Q9BW85 323 aaPredicted RBP6.79□□□□□ -1.32
CD44-236ENST00000533222 ZBED9Q6R2W3 1325 aa6.78□□□□□ -1.32
CD44-236ENST00000533222 WRNQ14191 1432 aaPredicted RBP eCLIP6.78□□□□□ -1.32
CD44-236ENST00000533222 CCDC66A2RUB6 948 aa6.78□□□□□ -1.32
CD44-236ENST00000533222 GDF11O95390 407 aa6.78□□□□□ -1.32
CD44-236ENST00000533222 ITGAEP38570 1179 aa6.78□□□□□ -1.32
CD44-236ENST00000533222 IREB2P48200 963 aaKnown RBP6.78□□□□□ -1.32
CD44-236ENST00000533222 FAM160A1Q05DH4 1040 aa6.78□□□□□ -1.32
CD44-236ENST00000533222 MTA1Q13330 715 aa6.78□□□□□ -1.32
CD44-236ENST00000533222 ADGRE1Q14246 886 aa6.78□□□□□ -1.32
CD44-236ENST00000533222 LLGL2Q6P1M3 1020 aa6.78□□□□□ -1.32
CD44-236ENST00000533222 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.78□□□□□ -1.32
CD44-236ENST00000533222 RPAINQ86UA6 219 aa6.78□□□□□ -1.32
CD44-236ENST00000533222 MNS1Q8NEH6 495 aa6.78□□□□□ -1.32
CD44-236ENST00000533222 DDX54Q8TDD1 881 aaKnown RBP6.78□□□□□ -1.32
CD44-236ENST00000533222 GPBAR1Q8TDU6 330 aa6.78□□□□□ -1.32
CD44-236ENST00000533222 FRAT1Q92837 279 aaPredicted RBP6.78□□□□□ -1.32
CD44-236ENST00000533222 TSPAN18Q96SJ8 248 aa6.78□□□□□ -1.32
CD44-236ENST00000533222 BRMS1Q9HCU9 246 aa6.78□□□□□ -1.32
CD44-236ENST00000533222 IGSF5Q9NSI5 407 aa6.78□□□□□ -1.32
CD44-236ENST00000533222 MINDY4BA8MYZ0 360 aa6.77□□□□□ -1.33
CD44-236ENST00000533222 CDK8P49336 464 aa6.77□□□□□ -1.33
CD44-236ENST00000533222 CCDC96Q2M329 555 aa6.77□□□□□ -1.33
CD44-236ENST00000533222 PLA2G4EQ3MJ16 856 aa6.77□□□□□ -1.33
CD44-236ENST00000533222 AGMOQ6ZNB7 445 aa6.77□□□□□ -1.33
CD44-236ENST00000533222 RINLQ6ZS11 566 aa6.77□□□□□ -1.33
CD44-236ENST00000533222 HS2ST1Q7LGA3 356 aa6.77□□□□□ -1.33
CD44-236ENST00000533222 ANKRD23Q86SG2 305 aa6.77□□□□□ -1.33
CD44-236ENST00000533222 SDR16C5Q8N3Y7 309 aa6.77□□□□□ -1.33
CD44-236ENST00000533222 WFDC12Q8WWY7 111 aa6.77□□□□□ -1.33
CD44-236ENST00000533222 RNF34Q969K3 372 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms