RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 FRRS1LQ9P0K9 344 aa4.5□□□□□ -1.69
CD44-234ENST00000531873 PPT2Q9UMR5 302 aa4.5□□□□□ -1.69
CD44-234ENST00000531873 TLDC2A0PJX2 215 aa4.49□□□□□ -1.69
CD44-234ENST00000531873 ALBP02768 609 aa4.49□□□□□ -1.69
CD44-234ENST00000531873 CANXP27824 592 aaKnown RBP4.49□□□□□ -1.69
CD44-234ENST00000531873 PTPN11Q06124 597 aaPredicted RBP4.49□□□□□ -1.69
CD44-234ENST00000531873 PPP2R3AQ06190 1150 aa4.49□□□□□ -1.69
CD44-234ENST00000531873 FZD5Q13467 585 aa4.49□□□□□ -1.69
CD44-234ENST00000531873 RASA3Q14644 834 aa4.49□□□□□ -1.69
CD44-234ENST00000531873 GRIK5Q16478 980 aa4.49□□□□□ -1.69
CD44-234ENST00000531873 HGSNATQ68CP4 663 aa4.49□□□□□ -1.69
CD44-234ENST00000531873 ELMSAN1Q6PJG2 1045 aa4.49□□□□□ -1.69
CD44-234ENST00000531873 MPRIPQ6WCQ1 1025 aa4.49□□□□□ -1.69
CD44-234ENST00000531873 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.49□□□□□ -1.69
CD44-234ENST00000531873 C20orf204Q6ZNR8 217 aa4.49□□□□□ -1.69
CD44-234ENST00000531873 REC114Q7Z4M0 266 aa4.49□□□□□ -1.69
CD44-234ENST00000531873 TP53INP1Q96A56 240 aa4.49□□□□□ -1.69
CD44-234ENST00000531873 ANAPC16Q96DE5 110 aa4.49□□□□□ -1.69
CD44-234ENST00000531873 NRSN2Q9GZP1 204 aa4.49□□□□□ -1.69
CD44-234ENST00000531873 MIR1-1HGQ9H1L0 117 aa4.49□□□□□ -1.69
CD44-234ENST00000531873 SH2B1Q9NRF2 756 aaPredicted RBP4.49□□□□□ -1.69
CD44-234ENST00000531873 CACNA2D2Q9NY47 1150 aa4.49□□□□□ -1.69
CD44-234ENST00000531873 PRKAG3Q9UGI9 489 aa4.49□□□□□ -1.69
CD44-234ENST00000531873 CDK11AQ9UQ88 783 aaPredicted RBP4.49□□□□□ -1.69
CD44-234ENST00000531873 TMA7Q9Y2S6 64 aaKnown RBP4.49□□□□□ -1.69
CD44-234ENST00000531873 ROBO2Q9HCK4 1378 aa4.49□□□□□ -1.69
CD44-234ENST00000531873 SOX1O00570 391 aaPredicted RBP4.48□□□□□ -1.69
CD44-234ENST00000531873 ARNTP27540 789 aa4.48□□□□□ -1.69
CD44-234ENST00000531873 RAB33AQ14088 237 aa4.48□□□□□ -1.69
CD44-234ENST00000531873 SDE2Q6IQ49 451 aa4.48□□□□□ -1.69
CD44-234ENST00000531873 PSAPL1Q6NUJ1 521 aa4.48□□□□□ -1.69
CD44-234ENST00000531873 LLGL2Q6P1M3 1020 aa4.48□□□□□ -1.69
CD44-234ENST00000531873 ZNF662Q6ZS27 426 aa4.48□□□□□ -1.69
CD44-234ENST00000531873 C8orf86Q6ZUL3 223 aa4.48□□□□□ -1.69
CD44-234ENST00000531873 SLC51AQ86UW1 340 aa4.48□□□□□ -1.69
CD44-234ENST00000531873 TTC9Q92623 222 aa4.48□□□□□ -1.69
CD44-234ENST00000531873 JARID2Q92833 1246 aaPredicted RBP4.48□□□□□ -1.69
CD44-234ENST00000531873 MKL1Q969V6 931 aa4.48□□□□□ -1.69
CD44-234ENST00000531873 KRTAP4-2Q9BYR5 136 aa4.48□□□□□ -1.69
CD44-234ENST00000531873 ZNRF3Q9ULT6 936 aa4.48□□□□□ -1.69
CD44-234ENST00000531873 CYP8B1Q9UNU6 501 aa4.48□□□□□ -1.69
CD44-234ENST00000531873 POLR3KQ9Y2Y1 108 aaPredicted RBP4.48□□□□□ -1.69
CD44-234ENST00000531873 H3BRJ5 948 aa4.47□□□□□ -1.69
CD44-234ENST00000531873 SMAD7O15105 426 aaKnown RBP4.47□□□□□ -1.69
CD44-234ENST00000531873 HSP90B1P14625 803 aaKnown RBP4.47□□□□□ -1.69
CD44-234ENST00000531873 CDC27P30260 824 aa4.47□□□□□ -1.69
CD44-234ENST00000531873 GIPRP48546 466 aa4.47□□□□□ -1.69
CD44-234ENST00000531873 CDK8P49336 464 aa4.47□□□□□ -1.69
CD44-234ENST00000531873 CLCQ05315 142 aa4.47□□□□□ -1.69
CD44-234ENST00000531873 NFE2L2Q16236 605 aa4.47□□□□□ -1.69
CD44-234ENST00000531873 CWF19L2Q2TBE0 894 aaKnown RBP4.47□□□□□ -1.69
CD44-234ENST00000531873 GDF6Q6KF10 455 aaPredicted RBP4.47□□□□□ -1.69
CD44-234ENST00000531873 ILDR2Q71H61 639 aa4.47□□□□□ -1.69
CD44-234ENST00000531873 CELF2-AS1Q8N7Q2 184 aa4.47□□□□□ -1.69
CD44-234ENST00000531873 SOX17Q9H6I2 414 aaPredicted RBP4.47□□□□□ -1.69
CD44-234ENST00000531873 BRMS1Q9HCU9 246 aa4.47□□□□□ -1.69
CD44-234ENST00000531873 SNTG2Q9NY99 539 aa4.47□□□□□ -1.69
CD44-234ENST00000531873 SIRPGQ9P1W8 387 aa4.47□□□□□ -1.69
CD44-234ENST00000531873 SAMM50Q9Y512 469 aa4.47□□□□□ -1.69
CD44-234ENST00000531873 A0A0A0MRY4 1105 aa4.46□□□□□ -1.7
CD44-234ENST00000531873 TM4SF5O14894 197 aa4.46□□□□□ -1.7
CD44-234ENST00000531873 TRIM37O94972 964 aa4.46□□□□□ -1.7
CD44-234ENST00000531873 ECEL1O95672 775 aa4.46□□□□□ -1.7
CD44-234ENST00000531873 CTSBP07858 339 aa4.46□□□□□ -1.7
CD44-234ENST00000531873 GSTP1P09211 210 aaKnown RBP4.46□□□□□ -1.7
CD44-234ENST00000531873 IKBKEQ14164 716 aa4.46□□□□□ -1.7
CD44-234ENST00000531873 LRRC14Q15048 493 aa4.46□□□□□ -1.7
CD44-234ENST00000531873 TRAPPC3LQ5T215 181 aa4.46□□□□□ -1.7
CD44-234ENST00000531873 EGFLAMQ63HQ2 1017 aa4.46□□□□□ -1.7
CD44-234ENST00000531873 TXNDC11Q6PKC3 985 aa4.46□□□□□ -1.7
CD44-234ENST00000531873 LSRQ86X29 649 aaPredicted RBP4.46□□□□□ -1.7
CD44-234ENST00000531873 REXO1Q8N1G1 1221 aaKnown RBP4.46□□□□□ -1.7
CD44-234ENST00000531873 NUDT8Q8WV74 236 aa4.46□□□□□ -1.7
CD44-234ENST00000531873 CPLX3Q8WVH0 158 aa4.46□□□□□ -1.7
CD44-234ENST00000531873 CBX8Q9HC52 389 aa4.46□□□□□ -1.7
CD44-234ENST00000531873 MSRB2Q9Y3D2 182 aa4.46□□□□□ -1.7
CD44-234ENST00000531873 MRPL42Q9Y6G3 142 aaKnown RBP4.46□□□□□ -1.7
CD44-234ENST00000531873 FAM221BA6H8Z2 402 aa4.45□□□□□ -1.7
CD44-234ENST00000531873 RGS9O75916 674 aaPredicted RBP4.45□□□□□ -1.7
CD44-234ENST00000531873 ATE1O95260 518 aa4.45□□□□□ -1.7
CD44-234ENST00000531873 LMNB1P20700 586 aa4.45□□□□□ -1.7
CD44-234ENST00000531873 MCM4P33991 863 aa4.45□□□□□ -1.7
CD44-234ENST00000531873 ZNF165P49910 485 aa4.45□□□□□ -1.7
CD44-234ENST00000531873 AFF1P51825 1210 aaKnown RBP4.45□□□□□ -1.7
CD44-234ENST00000531873 EIF6P56537 245 aaKnown RBP4.45□□□□□ -1.7
CD44-234ENST00000531873 RAC1P63000 192 aa4.45□□□□□ -1.7
CD44-234ENST00000531873 RPL6Q02878 288 aaKnown RBP4.45□□□□□ -1.7
CD44-234ENST00000531873 AP3B2Q13367 1082 aa4.45□□□□□ -1.7
CD44-234ENST00000531873 TCEAL1Q15170 157 aa4.45□□□□□ -1.7
CD44-234ENST00000531873 TNNI3KQ59H18 835 aa4.45□□□□□ -1.7
CD44-234ENST00000531873 MAP1SQ66K74 1059 aaPredicted RBP4.45□□□□□ -1.7
CD44-234ENST00000531873 SCARA3Q6AZY7 606 aa4.45□□□□□ -1.7
CD44-234ENST00000531873 GK5Q6ZS86 529 aa4.45□□□□□ -1.7
CD44-234ENST00000531873 RBBP8NLQ8NC74 664 aaPredicted RBP4.45□□□□□ -1.7
CD44-234ENST00000531873 GPBAR1Q8TDU6 330 aa4.45□□□□□ -1.7
CD44-234ENST00000531873 MRFAP1L1Q96HT8 127 aa4.45□□□□□ -1.7
CD44-234ENST00000531873 DEPDC7Q96QD5 511 aa4.45□□□□□ -1.7
CD44-234ENST00000531873 FERD3LQ96RJ6 166 aa4.45□□□□□ -1.7
CD44-234ENST00000531873 SRPK1Q96SB4 655 aaKnown RBP4.45□□□□□ -1.7
CD44-234ENST00000531873 EMILIN2Q9BXX0 1053 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms