RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 ZBTB7CA1YPR0 619 aa7.24□□□□□ -1.25
CD44-217ENST00000525348 FAM170BA6NMN3 283 aa7.24□□□□□ -1.25
CD44-217ENST00000525348 HCLS1P14317 486 aaPredicted RBP7.24□□□□□ -1.25
CD44-217ENST00000525348 NTF4P34130 210 aa7.24□□□□□ -1.25
CD44-217ENST00000525348 CD97P48960 835 aa7.24□□□□□ -1.25
CD44-217ENST00000525348 MAP7Q14244 749 aa7.24□□□□□ -1.25
CD44-217ENST00000525348 CCDC85BQ15834 202 aaPredicted RBP7.24□□□□□ -1.25
CD44-217ENST00000525348 TMCO4Q5TGY1 634 aa7.24□□□□□ -1.25
CD44-217ENST00000525348 TTBK2Q6IQ55 1244 aa7.24□□□□□ -1.25
CD44-217ENST00000525348 UBE3DQ7Z6J8 389 aa7.24□□□□□ -1.25
CD44-217ENST00000525348 ACSBG1Q96GR2 724 aa7.24□□□□□ -1.25
CD44-217ENST00000525348 SAMM50Q9Y512 469 aa7.24□□□□□ -1.25
CD44-217ENST00000525348 DCDC2CA8MYV0 355 aa7.23□□□□□ -1.25
CD44-217ENST00000525348 HOXA10P31260 410 aaPredicted RBP7.23□□□□□ -1.25
CD44-217ENST00000525348 LRRC14Q15048 493 aa7.23□□□□□ -1.25
CD44-217ENST00000525348 MAP3K11Q16584 847 aa7.23□□□□□ -1.25
CD44-217ENST00000525348 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.23□□□□□ -1.25
CD44-217ENST00000525348 ISL2Q96A47 359 aa7.23□□□□□ -1.25
CD44-217ENST00000525348 TBC1D32Q96NH3 1257 aa7.23□□□□□ -1.25
CD44-217ENST00000525348 ZFP64Q9NPA5 681 aa7.23□□□□□ -1.25
CD44-217ENST00000525348 CYP8B1Q9UNU6 501 aa7.23□□□□□ -1.25
CD44-217ENST00000525348 PCDHB5Q9Y5E4 795 aa7.23□□□□□ -1.25
CD44-217ENST00000525348 CDK8P49336 464 aa7.22□□□□□ -1.25
CD44-217ENST00000525348 ERVK-24P63145 666 aa7.22□□□□□ -1.25
CD44-217ENST00000525348 RING1Q06587 406 aa7.22□□□□□ -1.25
CD44-217ENST00000525348 CDK5R2Q13319 367 aa7.22□□□□□ -1.25
CD44-217ENST00000525348 INPP5AQ14642 412 aa7.22□□□□□ -1.25
CD44-217ENST00000525348 PPM1JQ5JR12 505 aa7.22□□□□□ -1.25
CD44-217ENST00000525348 C12orf40Q86WS4 652 aa7.22□□□□□ -1.25
CD44-217ENST00000525348 SMYD4Q8IYR2 804 aaPredicted RBP7.22□□□□□ -1.25
CD44-217ENST00000525348 GIPC2Q8TF65 315 aa7.22□□□□□ -1.25
CD44-217ENST00000525348 BCL2L13Q9BXK5 485 aa7.22□□□□□ -1.25
CD44-217ENST00000525348 PIDD1Q9HB75 910 aa7.22□□□□□ -1.25
CD44-217ENST00000525348 PCDHA4Q9UN74 947 aa7.22□□□□□ -1.25
CD44-217ENST00000525348 USP31Q70CQ4 1352 aa7.21□□□□□ -1.25
CD44-217ENST00000525348 KIAA1324LA8MWY0 1029 aaPredicted RBP7.21□□□□□ -1.26
CD44-217ENST00000525348 SORBS3O60504 671 aa7.21□□□□□ -1.26
CD44-217ENST00000525348 LIG3P49916 1009 aa7.21□□□□□ -1.26
CD44-217ENST00000525348 SEPT6Q14141 434 aa7.21□□□□□ -1.26
CD44-217ENST00000525348 LRFN4Q6PJG9 635 aa7.21□□□□□ -1.26
CD44-217ENST00000525348 RNF214Q8ND24 703 aa7.21□□□□□ -1.26
CD44-217ENST00000525348 RNGTTO60942 597 aaKnown RBP7.2□□□□□ -1.26
CD44-217ENST00000525348 COBLO75128 1261 aa7.2□□□□□ -1.26
CD44-217ENST00000525348 ST13P50502 369 aaKnown RBP7.2□□□□□ -1.26
CD44-217ENST00000525348 TRIM26Q12899 539 aaPredicted RBP7.2□□□□□ -1.26
CD44-217ENST00000525348 TAF1CQ15572 869 aaPredicted RBP7.2□□□□□ -1.26
CD44-217ENST00000525348 SCARA3Q6AZY7 606 aa7.2□□□□□ -1.26
CD44-217ENST00000525348 AGMOQ6ZNB7 445 aa7.2□□□□□ -1.26
CD44-217ENST00000525348 ZNF765Q7L2R6 523 aa7.2□□□□□ -1.26
CD44-217ENST00000525348 CRELD1Q96HD1 420 aa7.2□□□□□ -1.26
CD44-217ENST00000525348 OSBPL1AQ9BXW6 950 aa7.2□□□□□ -1.26
CD44-217ENST00000525348 ATG3Q9NT62 314 aa7.2□□□□□ -1.26
CD44-217ENST00000525348 PIM2Q9P1W9 311 aa7.2□□□□□ -1.26
CD44-217ENST00000525348 VTI1BQ9UEU0 232 aa7.2□□□□□ -1.26
CD44-217ENST00000525348 F6X3S4 739 aa7.19□□□□□ -1.26
CD44-217ENST00000525348 ADAMTS4O75173 837 aa7.19□□□□□ -1.26
CD44-217ENST00000525348 TFE3P19532 575 aaPredicted RBP7.19□□□□□ -1.26
CD44-217ENST00000525348 SPINK2P20155 84 aa7.19□□□□□ -1.26
CD44-217ENST00000525348 MFAP1P55081 439 aaKnown RBP7.19□□□□□ -1.26
CD44-217ENST00000525348 RPS26P62854 115 aaKnown RBP7.19□□□□□ -1.26
CD44-217ENST00000525348 HNRNPUQ00839 825 aaKnown RBP eCLIP7.19□□□□□ -1.26
CD44-217ENST00000525348 PLPPR2Q96GM1 343 aa7.19□□□□□ -1.26
CD44-217ENST00000525348 PSMG3-AS1Q96PY0 264 aa7.19□□□□□ -1.26
CD44-217ENST00000525348 PCMTD2Q9NV79 361 aa7.19□□□□□ -1.26
CD44-217ENST00000525348 TLR6Q9Y2C9 796 aa7.19□□□□□ -1.26
CD44-217ENST00000525348 LEFTY1O75610 366 aa7.18□□□□□ -1.26
CD44-217ENST00000525348 MRPL58Q14197 206 aaKnown RBP7.18□□□□□ -1.26
CD44-217ENST00000525348 ZBTB37Q5TC79 503 aa7.18□□□□□ -1.26
CD44-217ENST00000525348 CYFIP1Q7L576 1253 aa7.18□□□□□ -1.26
CD44-217ENST00000525348 NOC4LQ9BVI4 516 aaKnown RBP7.18□□□□□ -1.26
CD44-217ENST00000525348 PCOLCE2Q9UKZ9 415 aa7.18□□□□□ -1.26
CD44-217ENST00000525348 LEMD3Q9Y2U8 911 aa7.18□□□□□ -1.26
CD44-217ENST00000525348 U3KQE9 123 aa7.18□□□□□ -1.26
CD44-217ENST00000525348 FOSL1P15407 271 aa7.17□□□□□ -1.26
CD44-217ENST00000525348 MSMPQ1L6U9 139 aa7.17□□□□□ -1.26
CD44-217ENST00000525348 WIPI1Q5MNZ9 446 aaPredicted RBP7.17□□□□□ -1.26
CD44-217ENST00000525348 OGFOD3Q6PK18 319 aa7.17□□□□□ -1.26
CD44-217ENST00000525348 DTX1Q86Y01 620 aa7.17□□□□□ -1.26
CD44-217ENST00000525348 PHC3Q8NDX5 983 aa7.17□□□□□ -1.26
CD44-217ENST00000525348 MRS2Q9HD23 443 aa7.17□□□□□ -1.26
CD44-217ENST00000525348 FAM87AP0C7U9 286 aa7.16□□□□□ -1.26
CD44-217ENST00000525348 ZNF16P17020 682 aaPredicted RBP7.16□□□□□ -1.26
CD44-217ENST00000525348 GRIK1P39086 918 aa7.16□□□□□ -1.26
CD44-217ENST00000525348 CPSF6Q16630 551 aaKnown RBP eCLIP7.16□□□□□ -1.26
CD44-217ENST00000525348 INTS5Q6P9B9 1019 aaKnown RBP7.16□□□□□ -1.26
CD44-217ENST00000525348 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.16□□□□□ -1.26
CD44-217ENST00000525348 GIMAP7Q8NHV1 300 aa7.16□□□□□ -1.26
CD44-217ENST00000525348 ELMO3Q96BJ8 720 aa7.16□□□□□ -1.26
CD44-217ENST00000525348 METTL22Q9BUU2 404 aaPredicted RBP7.16□□□□□ -1.26
CD44-217ENST00000525348 PRAMEF27A3QJZ7 478 aa7.15□□□□□ -1.26
CD44-217ENST00000525348 FANCGO15287 622 aa7.15□□□□□ -1.26
CD44-217ENST00000525348 LDLRAD1Q5T700 205 aa7.15□□□□□ -1.26
CD44-217ENST00000525348 FBRSQ9HAH7 460 aa7.15□□□□□ -1.26
CD44-217ENST00000525348 SSU72Q9NP77 194 aaKnown RBP7.15□□□□□ -1.26
CD44-217ENST00000525348 RBAK-RBAKDNI3L0D1 243 aa7.14□□□□□ -1.27
CD44-217ENST00000525348 GFRA2O00451 464 aa7.14□□□□□ -1.27
CD44-217ENST00000525348 CYP26A1O43174 497 aa7.14□□□□□ -1.27
CD44-217ENST00000525348 ZNF326Q5BKZ1 582 aaKnown RBP7.14□□□□□ -1.27
CD44-217ENST00000525348 NFXL1Q6ZNB6 911 aa7.14□□□□□ -1.27
CD44-217ENST00000525348 TOP6BLQ8N6T0 577 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms