RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 TRAPPC3LQ5T215 181 aa9.61□□□□□ -0.87
VIM-207ENST00000495528 ALG1LQ6GMV1 187 aa9.61□□□□□ -0.87
VIM-207ENST00000495528 DMRTC2Q8IXT2 367 aaPredicted RBP9.61□□□□□ -0.87
VIM-207ENST00000495528 TTC9Q92623 222 aa9.61□□□□□ -0.87
VIM-207ENST00000495528 DDX17Q92841 729 aaKnown RBP9.61□□□□□ -0.87
VIM-207ENST00000495528 TRIM11Q96F44 468 aa9.61□□□□□ -0.87
VIM-207ENST00000495528 SH2B1Q9NRF2 756 aaPredicted RBP9.61□□□□□ -0.87
VIM-207ENST00000495528 RNF19AQ9NV58 838 aa9.61□□□□□ -0.87
VIM-207ENST00000495528 CCDC9Q9Y3X0 531 aaKnown RBP9.61□□□□□ -0.87
VIM-207ENST00000495528 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.61□□□□□ -0.87
VIM-207ENST00000495528 METP08581 1390 aa9.61□□□□□ -0.87
VIM-207ENST00000495528 E9PCH4 1651 aa9.61□□□□□ -0.87
VIM-207ENST00000495528 AHDC1Q5TGY3 1603 aaPredicted RBP9.6□□□□□ -0.87
VIM-207ENST00000495528 UNC13BO14795 1591 aa9.6□□□□□ -0.87
VIM-207ENST00000495528 GNB5O14775 395 aa9.6□□□□□ -0.87
VIM-207ENST00000495528 ZNF326Q5BKZ1 582 aaKnown RBP9.6□□□□□ -0.87
VIM-207ENST00000495528 KIAA0319Q5VV43 1072 aa9.6□□□□□ -0.87
VIM-207ENST00000495528 WFDC8Q8IUA0 241 aa9.6□□□□□ -0.87
VIM-207ENST00000495528 TMEM102Q8N9M5 508 aaPredicted RBP9.6□□□□□ -0.87
VIM-207ENST00000495528 NXPE3Q969Y0 559 aa9.6□□□□□ -0.87
VIM-207ENST00000495528 SCARF2Q96GP6 870 aaPredicted RBP9.6□□□□□ -0.87
VIM-207ENST00000495528 PLVAPQ9BX97 442 aa9.6□□□□□ -0.87
VIM-207ENST00000495528 BCL2L13Q9BXK5 485 aa9.6□□□□□ -0.87
VIM-207ENST00000495528 SUV39H2Q9H5I1 410 aa9.6□□□□□ -0.87
VIM-207ENST00000495528 PRDM6Q9NQX0 595 aa9.6□□□□□ -0.87
VIM-207ENST00000495528 AFF2P51816 1311 aa9.59□□□□□ -0.87
VIM-207ENST00000495528 DIP2AQ14689 1571 aa9.59□□□□□ -0.87
VIM-207ENST00000495528 COL19A1Q14993 1142 aa9.59□□□□□ -0.87
VIM-207ENST00000495528 MSL1Q68DK7 614 aa9.59□□□□□ -0.87
VIM-207ENST00000495528 TXNDC11Q6PKC3 985 aa9.59□□□□□ -0.87
VIM-207ENST00000495528 FBXO33Q7Z6M2 555 aa9.59□□□□□ -0.87
VIM-207ENST00000495528 LRRC59Q96AG4 307 aaKnown RBP9.59□□□□□ -0.87
VIM-207ENST00000495528 DUSP9Q99956 384 aaKnown RBP9.59□□□□□ -0.87
VIM-207ENST00000495528 TRPM2O94759 1503 aa9.59□□□□□ -0.87
VIM-207ENST00000495528 DCCP43146 1447 aa9.58□□□□□ -0.88
VIM-207ENST00000495528 MST1RQ04912 1400 aa9.58□□□□□ -0.88
VIM-207ENST00000495528 SETD5Q9C0A6 1442 aa9.58□□□□□ -0.88
VIM-207ENST00000495528 FAM177BA6PVY3 158 aa9.58□□□□□ -0.88
VIM-207ENST00000495528 PTPRAP18433 802 aa9.58□□□□□ -0.88
VIM-207ENST00000495528 CDC27P30260 824 aa9.58□□□□□ -0.88
VIM-207ENST00000495528 GRM2Q14416 872 aa9.58□□□□□ -0.88
VIM-207ENST00000495528 C8orf37Q96NL8 207 aa9.58□□□□□ -0.88
VIM-207ENST00000495528 TCF12Q99081 682 aa9.58□□□□□ -0.88
VIM-207ENST00000495528 IQGAP3Q86VI3 1631 aa9.57□□□□□ -0.88
VIM-207ENST00000495528 FAM229AH3BQW9 127 aa9.57□□□□□ -0.88
VIM-207ENST00000495528 PRPF40AO75400 957 aaKnown RBP9.57□□□□□ -0.88
VIM-207ENST00000495528 BAG6P46379 1132 aa9.57□□□□□ -0.88
VIM-207ENST00000495528 SPRED3Q2MJR0 410 aa9.57□□□□□ -0.88
VIM-207ENST00000495528 NXPE4Q6UWF7 544 aa9.57□□□□□ -0.88
VIM-207ENST00000495528 CCNJLQ8IV13 435 aa9.57□□□□□ -0.88
VIM-207ENST00000495528 FBF1Q8TES7 1133 aa9.57□□□□□ -0.88
VIM-207ENST00000495528 GIPC2Q8TF65 315 aa9.57□□□□□ -0.88
VIM-207ENST00000495528 FOXD4L4Q8WXT5 416 aaPredicted RBP9.57□□□□□ -0.88
VIM-207ENST00000495528 BCO2Q9BYV7 579 aa9.57□□□□□ -0.88
VIM-207ENST00000495528 ASXL1Q8IXJ9 1541 aa9.56□□□□□ -0.88
VIM-207ENST00000495528 SHPRHQ149N8 1683 aa9.56□□□□□ -0.88
VIM-207ENST00000495528 LINC01387J3KSC0 135 aa9.56□□□□□ -0.88
VIM-207ENST00000495528 GRIA4P48058 902 aa9.56□□□□□ -0.88
VIM-207ENST00000495528 BHLHE41Q9C0J9 482 aaPredicted RBP9.56□□□□□ -0.88
VIM-207ENST00000495528 PPME1Q9Y570 386 aa9.56□□□□□ -0.88
VIM-207ENST00000495528 PNPLA6Q8IY17 1366 aa9.55□□□□□ -0.88
VIM-207ENST00000495528 PIK3R2O00459 728 aa9.55□□□□□ -0.88
VIM-207ENST00000495528 EPHA1P21709 976 aa9.55□□□□□ -0.88
VIM-207ENST00000495528 RBM6P78332 1123 aaKnown RBP9.55□□□□□ -0.88
VIM-207ENST00000495528 BSNDQ8WZ55 320 aa9.55□□□□□ -0.88
VIM-207ENST00000495528 FAM161BQ96MY7 647 aa9.55□□□□□ -0.88
VIM-207ENST00000495528 MUC3BQ9H195 1237 aa9.55□□□□□ -0.88
VIM-207ENST00000495528 PARP2Q9UGN5 583 aa9.55□□□□□ -0.88
VIM-207ENST00000495528 NRXN3Q9Y4C0 1643 aa9.55□□□□□ -0.88
VIM-207ENST00000495528 SETBP1Q9Y6X0 1596 aa9.54□□□□□ -0.88
VIM-207ENST00000495528 CDK12Q9NYV4 1490 aaPredicted RBP9.54□□□□□ -0.88
VIM-207ENST00000495528 A0A096LPE4 126 aa9.54□□□□□ -0.88
VIM-207ENST00000495528 A0A1W2PPZ6 126 aa9.54□□□□□ -0.88
VIM-207ENST00000495528 FCGRTP55899 365 aa9.54□□□□□ -0.88
VIM-207ENST00000495528 XPCQ01831 940 aaPredicted RBP9.54□□□□□ -0.88
VIM-207ENST00000495528 RGS22Q8NE09 1264 aa9.54□□□□□ -0.88
VIM-207ENST00000495528 ORAI2Q96SN7 254 aa9.54□□□□□ -0.88
VIM-207ENST00000495528 OSBPL7Q9BZF2 842 aa9.54□□□□□ -0.88
VIM-207ENST00000495528 ADAM19Q9H013 955 aa9.54□□□□□ -0.88
VIM-207ENST00000495528 TRAK1Q9UPV9 953 aa9.54□□□□□ -0.88
VIM-207ENST00000495528 SPG7Q9UQ90 795 aa9.54□□□□□ -0.88
VIM-207ENST00000495528 ADGRL3Q9HAR2 1447 aa9.54□□□□□ -0.88
VIM-207ENST00000495528 XRN1Q8IZH2 1706 aaKnown RBP9.53□□□□□ -0.88
VIM-207ENST00000495528 CABP4P57796 275 aa9.53□□□□□ -0.88
VIM-207ENST00000495528 GLIS3Q8NEA6 775 aa9.53□□□□□ -0.88
VIM-207ENST00000495528 CARD10Q9BWT7 1032 aa9.53□□□□□ -0.88
VIM-207ENST00000495528 ABCB6Q9NP58 842 aa9.53□□□□□ -0.88
VIM-207ENST00000495528 PPP4R2Q9NY27 417 aa9.53□□□□□ -0.88
VIM-207ENST00000495528 NOP53Q9NZM5 478 aaKnown RBP9.53□□□□□ -0.88
VIM-207ENST00000495528 SOX13Q9UN79 622 aa9.53□□□□□ -0.88
VIM-207ENST00000495528 C1orf167Q5SNV9 1468 aa9.53□□□□□ -0.88
VIM-207ENST00000495528 A0A0A0MRY4 1105 aa9.52□□□□□ -0.89
VIM-207ENST00000495528 TMEM238LA0A1B0GVL6 79 aa9.52□□□□□ -0.89
VIM-207ENST00000495528 SPDYE3A6NKU9 549 aa9.52□□□□□ -0.89
VIM-207ENST00000495528 RGS12O14924 1447 aa9.52□□□□□ -0.89
VIM-207ENST00000495528 GNA15P30679 374 aa9.52□□□□□ -0.89
VIM-207ENST00000495528 FGD1P98174 961 aa9.52□□□□□ -0.89
VIM-207ENST00000495528 TRIM28Q13263 835 aaKnown RBP9.52□□□□□ -0.89
VIM-207ENST00000495528 DTHD1Q6ZMT9 781 aa9.52□□□□□ -0.89
VIM-207ENST00000495528 CACTIN-AS1Q8N1I8 211 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms