RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 GIGYF2Q6Y7W6 1299 aaKnown RBP15.42■□□□□ 0.06
GPC1-209ENST00000495100 CCDC12Q8WUD4 166 aaPredicted RBP15.42■□□□□ 0.06
GPC1-209ENST00000495100 SAMSN1Q9NSI8 373 aaKnown RBP15.42■□□□□ 0.06
GPC1-209ENST00000495100 USPL1Q5W0Q7 1092 aa15.42■□□□□ 0.06
GPC1-209ENST00000495100 PIK3AP1Q6ZUJ8 805 aa15.42■□□□□ 0.06
GPC1-209ENST00000495100 LRRN4CLQ8ND94 238 aa15.42■□□□□ 0.06
GPC1-209ENST00000495100 ZHX3Q9H4I2 956 aa15.42■□□□□ 0.06
GPC1-209ENST00000495100 HOOK1Q9UJC3 728 aaKnown RBP15.42■□□□□ 0.06
GPC1-209ENST00000495100 WDR17Q8IZU2 1322 aa15.42■□□□□ 0.06
GPC1-209ENST00000495100 SH3TC1Q8TE82 1336 aa15.42■□□□□ 0.06
GPC1-209ENST00000495100 USP17L12C9JPN9 530 aa15.41■□□□□ 0.06
GPC1-209ENST00000495100 USP17L21D6R901 530 aa15.41■□□□□ 0.06
GPC1-209ENST00000495100 GOLGA8HP0CJ92 632 aa15.41■□□□□ 0.06
GPC1-209ENST00000495100 ADD2P35612 726 aa15.41■□□□□ 0.06
GPC1-209ENST00000495100 FAM193AP78312 1265 aa15.41■□□□□ 0.06
GPC1-209ENST00000495100 DDB1Q16531 1140 aa15.41■□□□□ 0.06
GPC1-209ENST00000495100 FMR1NBQ8N0W7 255 aaPredicted RBP15.41■□□□□ 0.06
GPC1-209ENST00000495100 GPKOWQ92917 476 aaPredicted RBP eCLIP15.41■□□□□ 0.06
GPC1-209ENST00000495100 PLEKHA4Q9H4M7 779 aa15.41■□□□□ 0.06
GPC1-209ENST00000495100 PUM3Q15397 648 aaKnown RBP15.41■□□□□ 0.06
GPC1-209ENST00000495100 SMARCC2Q8TAQ2 1214 aa15.41■□□□□ 0.06
GPC1-209ENST00000495100 DRC1Q96MC2 740 aa15.41■□□□□ 0.06
GPC1-209ENST00000495100 MROH7-TTC4A0A0A0MT08 1334 aa15.41■□□□□ 0.06
GPC1-209ENST00000495100 PRR29P0C7W0 189 aa15.4■□□□□ 0.06
GPC1-209ENST00000495100 XBP1P17861 261 aa15.4■□□□□ 0.06
GPC1-209ENST00000495100 MYL5Q02045 173 aa15.4■□□□□ 0.06
GPC1-209ENST00000495100 TTF1Q15361 905 aaPredicted RBP15.4■□□□□ 0.06
GPC1-209ENST00000495100 MKNK2Q9HBH9 465 aa15.4■□□□□ 0.06
GPC1-209ENST00000495100 MCM9Q9NXL9 1143 aa15.4■□□□□ 0.06
GPC1-209ENST00000495100 MAGEB6P1A0A0J9YX57 407 aa15.4■□□□□ 0.06
GPC1-209ENST00000495100 PDE8AO60658 829 aa15.4■□□□□ 0.06
GPC1-209ENST00000495100 SEC31AO94979 1220 aaKnown RBP15.4■□□□□ 0.06
GPC1-209ENST00000495100 PCCAP05165 728 aaPredicted RBP15.4■□□□□ 0.06
GPC1-209ENST00000495100 CAVIN4Q5BKX8 364 aa15.4■□□□□ 0.06
GPC1-209ENST00000495100 NOM1Q5C9Z4 860 aaKnown RBP15.4■□□□□ 0.06
GPC1-209ENST00000495100 KRI1Q8N9T8 703 aaKnown RBP15.4■□□□□ 0.06
GPC1-209ENST00000495100 HPS5Q9UPZ3 1129 aa15.4■□□□□ 0.06
GPC1-209ENST00000495100 SPATA31A3Q5VYP0 1347 aa15.4■□□□□ 0.06
GPC1-209ENST00000495100 CASP7P55210 303 aa15.4■□□□□ 0.06
GPC1-209ENST00000495100 PLA2G4DQ86XP0 818 aa15.4■□□□□ 0.06
GPC1-209ENST00000495100 MAP3K15Q6ZN16 1313 aa15.39■□□□□ 0.05
GPC1-209ENST00000495100 GTF2F1P35269 517 aaKnown RBP eCLIP15.39■□□□□ 0.05
GPC1-209ENST00000495100 IQCA1Q86XH1 822 aa15.39■□□□□ 0.05
GPC1-209ENST00000495100 DZIP1Q86YF9 867 aaKnown RBP15.39■□□□□ 0.05
GPC1-209ENST00000495100 MB21D2Q8IYB1 491 aaPredicted RBP15.39■□□□□ 0.05
GPC1-209ENST00000495100 RTEL1Q9NZ71 1219 aa15.39■□□□□ 0.05
GPC1-209ENST00000495100 PIK3C2AO00443 1686 aa15.39■□□□□ 0.05
GPC1-209ENST00000495100 ERVV-2B6SEH9 535 aa15.39■□□□□ 0.05
GPC1-209ENST00000495100 NAP1L1P55209 391 aaKnown RBP15.39■□□□□ 0.05
GPC1-209ENST00000495100 MCM6Q14566 821 aa15.39■□□□□ 0.05
GPC1-209ENST00000495100 FAM98CQ17RN3 349 aaKnown RBP15.39■□□□□ 0.05
GPC1-209ENST00000495100 AKNAD1Q5T1N1 836 aa15.39■□□□□ 0.05
GPC1-209ENST00000495100 SHC4Q6S5L8 630 aa15.39■□□□□ 0.05
GPC1-209ENST00000495100 NUP88Q99567 741 aaPredicted RBP15.39■□□□□ 0.05
GPC1-209ENST00000495100 TRIM34Q9BYJ4 488 aa15.39■□□□□ 0.05
GPC1-209ENST00000495100 C1orf167Q5SNV9 1468 aa15.39■□□□□ 0.05
GPC1-209ENST00000495100 CYP2D6P10635 497 aa15.39■□□□□ 0.05
GPC1-209ENST00000495100 KIF4BQ2VIQ3 1234 aa15.39■□□□□ 0.05
GPC1-209ENST00000495100 RRAGBQ5VZM2 374 aa15.39■□□□□ 0.05
GPC1-209ENST00000495100 CATIPQ7Z7H3 387 aa15.39■□□□□ 0.05
GPC1-209ENST00000495100 CTCFLQ8NI51 663 aaPredicted RBP15.39■□□□□ 0.05
GPC1-209ENST00000495100 TNKSO95271 1327 aa15.38■□□□□ 0.05
GPC1-209ENST00000495100 SLU7O95391 586 aaKnown RBP15.38■□□□□ 0.05
GPC1-209ENST00000495100 PLEKHA8P1O95397 391 aa15.38■□□□□ 0.05
GPC1-209ENST00000495100 CHRNDQ07001 517 aa15.38■□□□□ 0.05
GPC1-209ENST00000495100 LPIN2Q92539 896 aa15.38■□□□□ 0.05
GPC1-209ENST00000495100 GNL3LQ9NVN8 582 aaKnown RBP15.38■□□□□ 0.05
GPC1-209ENST00000495100 N4BP3O15049 544 aa15.38■□□□□ 0.05
GPC1-209ENST00000495100 RHOXF2BP0C7M4 288 aa15.38■□□□□ 0.05
GPC1-209ENST00000495100 NLRP12P59046 1061 aa15.38■□□□□ 0.05
GPC1-209ENST00000495100 CCDC152Q4G0S7 254 aa15.38■□□□□ 0.05
GPC1-209ENST00000495100 BRAPQ7Z569 592 aa15.38■□□□□ 0.05
GPC1-209ENST00000495100 ZNF654Q8IZM8 581 aa15.38■□□□□ 0.05
GPC1-209ENST00000495100 RHOXF2Q9BQY4 288 aa15.38■□□□□ 0.05
GPC1-209ENST00000495100 BRMS1Q9HCU9 246 aa15.38■□□□□ 0.05
GPC1-209ENST00000495100 UTYO14607 1347 aa15.38■□□□□ 0.05
GPC1-209ENST00000495100 MTF1Q14872 753 aa15.38■□□□□ 0.05
GPC1-209ENST00000495100 ARMCX5Q6P1M9 558 aa15.38■□□□□ 0.05
GPC1-209ENST00000495100 HEATR3Q7Z4Q2 680 aa15.38■□□□□ 0.05
GPC1-209ENST00000495100 ANKRD18AQ8IVF6 992 aa15.38■□□□□ 0.05
GPC1-209ENST00000495100 STRBPQ96SI9 672 aaKnown RBP15.38■□□□□ 0.05
GPC1-209ENST00000495100 CSRNP2Q9H175 543 aa15.38■□□□□ 0.05
GPC1-209ENST00000495100 MON2Q7Z3U7 1717 aa15.38■□□□□ 0.05
GPC1-209ENST00000495100 G3V3G9 751 aa15.37■□□□□ 0.05
GPC1-209ENST00000495100 GYS2P54840 703 aa15.37■□□□□ 0.05
GPC1-209ENST00000495100 DCAF8Q5TAQ9 597 aa15.37■□□□□ 0.05
GPC1-209ENST00000495100 SLC51AQ86UW1 340 aa15.37■□□□□ 0.05
GPC1-209ENST00000495100 C8orf37Q96NL8 207 aa15.37■□□□□ 0.05
GPC1-209ENST00000495100 PAXBP1Q9Y5B6 917 aa15.37■□□□□ 0.05
GPC1-209ENST00000495100 MATR3P43243 847 aaKnown RBP eCLIP15.37■□□□□ 0.05
GPC1-209ENST00000495100 PDE4BQ07343 736 aa15.37■□□□□ 0.05
GPC1-209ENST00000495100 PSMB7Q99436 277 aa15.37■□□□□ 0.05
GPC1-209ENST00000495100 TRIM75PA6NK02 468 aa15.37■□□□□ 0.05
GPC1-209ENST00000495100 TFRCP02786 760 aaKnown RBP15.37■□□□□ 0.05
GPC1-209ENST00000495100 UQCRFS1P1P0C7P4 283 aa15.37■□□□□ 0.05
GPC1-209ENST00000495100 CASQ1P31415 396 aa15.37■□□□□ 0.05
GPC1-209ENST00000495100 CRKLP46109 303 aaKnown RBP15.37■□□□□ 0.05
GPC1-209ENST00000495100 GSDMDP57764 484 aa15.37■□□□□ 0.05
GPC1-209ENST00000495100 SLC39A14Q15043 492 aa15.37■□□□□ 0.05
GPC1-209ENST00000495100 NBPF5PQ86XG9 351 aaPredicted RBP15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms