RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 DOCK3Q8IZD9 2030 aa17.43■□□□□ 0.38
VARS-227ENST00000489979 PTPRFP10586 1907 aa17.43■□□□□ 0.38
VARS-227ENST00000489979 ANP32CO43423 234 aa17.43■□□□□ 0.38
VARS-227ENST00000489979 INHAP05111 366 aa17.43■□□□□ 0.38
VARS-227ENST00000489979 ELNP15502 786 aa17.43■□□□□ 0.38
VARS-227ENST00000489979 RGS3P49796 1198 aa17.43■□□□□ 0.38
VARS-227ENST00000489979 FAM9BQ8IZU0 186 aa17.43■□□□□ 0.38
VARS-227ENST00000489979 SIL1Q9H173 461 aa17.43■□□□□ 0.38
VARS-227ENST00000489979 AFG3L2Q9Y4W6 797 aa17.43■□□□□ 0.38
VARS-227ENST00000489979 SLURP2P0DP57 97 aa17.42■□□□□ 0.38
VARS-227ENST00000489979 ATP2B3Q16720 1220 aa17.42■□□□□ 0.38
VARS-227ENST00000489979 SH3BP5LQ7L8J4 393 aa17.42■□□□□ 0.38
VARS-227ENST00000489979 IDI2Q9BXS1 227 aa17.42■□□□□ 0.38
VARS-227ENST00000489979 DENND2AQ9ULE3 1009 aa17.42■□□□□ 0.38
VARS-227ENST00000489979 SALL1Q9NSC2 1324 aa17.42■□□□□ 0.38
VARS-227ENST00000489979 PHIPQ8WWQ0 1821 aa17.42■□□□□ 0.38
VARS-227ENST00000489979 TNPO2O14787 897 aaKnown RBP17.41■□□□□ 0.38
VARS-227ENST00000489979 EVI5O60447 810 aa17.41■□□□□ 0.38
VARS-227ENST00000489979 ENTPD3O75355 529 aa17.41■□□□□ 0.38
VARS-227ENST00000489979 TFRCP02786 760 aaKnown RBP17.41■□□□□ 0.38
VARS-227ENST00000489979 PHKA1P46020 1223 aa17.41■□□□□ 0.38
VARS-227ENST00000489979 ZSCAN29Q8IWY8 852 aaPredicted RBP17.41■□□□□ 0.38
VARS-227ENST00000489979 PXYLP1Q8TE99 480 aa17.41■□□□□ 0.38
VARS-227ENST00000489979 SMCR8Q8TEV9 937 aaPredicted RBP17.41■□□□□ 0.38
VARS-227ENST00000489979 SSH1Q8WYL5 1049 aa17.41■□□□□ 0.38
VARS-227ENST00000489979 DEFB118Q96PH6 123 aa17.41■□□□□ 0.38
VARS-227ENST00000489979 CEP126Q9P2H0 1117 aa17.41■□□□□ 0.38
VARS-227ENST00000489979 SLC45A1Q9Y2W3 748 aa17.41■□□□□ 0.38
VARS-227ENST00000489979 LRRFIP2Q9Y608 721 aaKnown RBP17.41■□□□□ 0.38
VARS-227ENST00000489979 LAMA3Q16787 3333 aa17.41■□□□□ 0.38
VARS-227ENST00000489979 DOCK1Q14185 1865 aa17.4■□□□□ 0.38
VARS-227ENST00000489979 MAP3K10Q02779 954 aa17.4■□□□□ 0.38
VARS-227ENST00000489979 IRF5Q13568 498 aa17.4■□□□□ 0.38
VARS-227ENST00000489979 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.4■□□□□ 0.38
VARS-227ENST00000489979 TAOK2Q9UL54 1235 aa17.4■□□□□ 0.38
VARS-227ENST00000489979 GAKO14976 1311 aa17.4■□□□□ 0.38
VARS-227ENST00000489979 ZNF521Q96K83 1311 aa17.4■□□□□ 0.38
VARS-227ENST00000489979 RFX7Q2KHR2 1363 aa17.4■□□□□ 0.38
VARS-227ENST00000489979 ALPK3Q96L96 1907 aa17.39■□□□□ 0.37
VARS-227ENST00000489979 DDTLA6NHG4 134 aaPredicted RBP17.39■□□□□ 0.37
VARS-227ENST00000489979 TRIM75PA6NK02 468 aa17.39■□□□□ 0.37
VARS-227ENST00000489979 SEMA3EO15041 775 aa17.39■□□□□ 0.37
VARS-227ENST00000489979 CIAO1O76071 339 aa17.39■□□□□ 0.37
VARS-227ENST00000489979 PAK6Q9NQU5 681 aaPredicted RBP17.39■□□□□ 0.37
VARS-227ENST00000489979 FBXO3Q9UK99 471 aa17.39■□□□□ 0.37
VARS-227ENST00000489979 A0A1W2PPC1 479 aa17.38■□□□□ 0.37
VARS-227ENST00000489979 SOX1O00570 391 aaPredicted RBP17.38■□□□□ 0.37
VARS-227ENST00000489979 CTNND1O60716 968 aaKnown RBP17.38■□□□□ 0.37
VARS-227ENST00000489979 ADORA1P30542 326 aa17.38■□□□□ 0.37
VARS-227ENST00000489979 PICALMQ13492 652 aa17.38■□□□□ 0.37
VARS-227ENST00000489979 CCDC84Q86UT8 332 aaPredicted RBP17.38■□□□□ 0.37
VARS-227ENST00000489979 DZIP1Q86YF9 867 aaKnown RBP17.38■□□□□ 0.37
VARS-227ENST00000489979 ZGPATQ8N5A5 531 aaKnown RBP17.38■□□□□ 0.37
VARS-227ENST00000489979 ANKRD13CQ8N6S4 541 aa17.38■□□□□ 0.37
VARS-227ENST00000489979 SLC17A8Q8NDX2 589 aa17.38■□□□□ 0.37
VARS-227ENST00000489979 DDX4Q9NQI0 724 aaKnown RBP17.38■□□□□ 0.37
VARS-227ENST00000489979 STAP2Q9UGK3 403 aa17.38■□□□□ 0.37
VARS-227ENST00000489979 COL6A3P12111 3177 aa17.37■□□□□ 0.37
VARS-227ENST00000489979 CAPN2P17655 700 aa17.37■□□□□ 0.37
VARS-227ENST00000489979 IL15P40933 162 aaPredicted RBP17.37■□□□□ 0.37
VARS-227ENST00000489979 CCDC102BQ68D86 513 aa17.37■□□□□ 0.37
VARS-227ENST00000489979 COA7Q96BR5 231 aa17.37■□□□□ 0.37
VARS-227ENST00000489979 LRCH3Q96II8 777 aa17.37■□□□□ 0.37
VARS-227ENST00000489979 PAWRQ96IZ0 340 aaKnown RBP17.37■□□□□ 0.37
VARS-227ENST00000489979 CRISPLD2Q9H0B8 497 aa17.37■□□□□ 0.37
VARS-227ENST00000489979 ABCF2Q9UG63 623 aa17.37■□□□□ 0.37
VARS-227ENST00000489979 AGTPBP1Q9UPW5 1226 aa17.37■□□□□ 0.37
VARS-227ENST00000489979 DLL1O00548 723 aa17.36■□□□□ 0.37
VARS-227ENST00000489979 UBTFL1P0CB47 393 aaPredicted RBP17.36■□□□□ 0.37
VARS-227ENST00000489979 BTDP43251 543 aa17.36■□□□□ 0.37
VARS-227ENST00000489979 TREML2Q5T2D2 321 aa17.36■□□□□ 0.37
VARS-227ENST00000489979 PA2G4Q9UQ80 394 aaKnown RBP17.36■□□□□ 0.37
VARS-227ENST00000489979 RASGRF1Q13972 1273 aa17.35■□□□□ 0.37
VARS-227ENST00000489979 FAM110CQ1W6H9 321 aa17.35■□□□□ 0.37
VARS-227ENST00000489979 NECAB2Q7Z6G3 386 aa17.35■□□□□ 0.37
VARS-227ENST00000489979 SLF2Q8IX21 1173 aa17.35■□□□□ 0.37
VARS-227ENST00000489979 DIS3LQ8TF46 1054 aaKnown RBP17.35■□□□□ 0.37
VARS-227ENST00000489979 FAM163AQ96GL9 167 aaPredicted RBP17.35■□□□□ 0.37
VARS-227ENST00000489979 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.35■□□□□ 0.378e-6■□□□□ 10.8
VARS-227ENST00000489979 PNMA3Q9UL41 463 aa17.35■□□□□ 0.37
VARS-227ENST00000489979 ZBTB22O15209 634 aa17.34■□□□□ 0.37
VARS-227ENST00000489979 MROH7-TTC4A0A0A0MT08 1334 aa17.33■□□□□ 0.36
VARS-227ENST00000489979 FAM196BA6NMK8 535 aa17.33■□□□□ 0.36
VARS-227ENST00000489979 E9PSI1 815 aa17.33■□□□□ 0.36
VARS-227ENST00000489979 TBC1D12O60347 775 aa17.33■□□□□ 0.36
VARS-227ENST00000489979 TIMM10P62072 90 aa17.33■□□□□ 0.36
VARS-227ENST00000489979 SPTY2D1Q68D10 685 aaPredicted RBP17.33■□□□□ 0.36
VARS-227ENST00000489979 PROCA1Q8NCQ7 364 aaPredicted RBP17.33■□□□□ 0.36
VARS-227ENST00000489979 PDS5AQ29RF7 1337 aaKnown RBP17.32■□□□□ 0.36
VARS-227ENST00000489979 RHBDL3P58872 404 aa17.32■□□□□ 0.36
VARS-227ENST00000489979 SPP2Q13103 211 aa17.32■□□□□ 0.36
VARS-227ENST00000489979 ALDH1L2Q3SY69 923 aa17.32■□□□□ 0.36
VARS-227ENST00000489979 C7orf61Q8IZ16 206 aa17.32■□□□□ 0.36
VARS-227ENST00000489979 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.32■□□□□ 0.36
VARS-227ENST00000489979 COPRSQ9NQ92 184 aa17.32■□□□□ 0.36
VARS-227ENST00000489979 SMC4Q9NTJ3 1288 aa17.32■□□□□ 0.36
VARS-227ENST00000489979 ATAD5Q96QE3 1844 aa17.32■□□□□ 0.36
VARS-227ENST00000489979 LOC285556D6RIA3 1793 aa17.32■□□□□ 0.36
VARS-227ENST00000489979 GPR75-ASB3A0A0A6YYF3 556 aa17.31■□□□□ 0.36
VARS-227ENST00000489979 HMGCRP04035 888 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 961.9 ms