RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 NLGN1Q8N2Q7 840 aa12.53□□□□□ -0.4
HDAC6-228ENST00000486227 C6orf50Q9HD87 102 aa12.53□□□□□ -0.4
HDAC6-228ENST00000486227 POTEB2H3BUK9 544 aa12.53□□□□□ -0.4
HDAC6-228ENST00000486227 N4BP3O15049 544 aa12.53□□□□□ -0.4
HDAC6-228ENST00000486227 LEO1Q8WVC0 666 aaPredicted RBP12.53□□□□□ -0.4
HDAC6-228ENST00000486227 TRIM21P19474 475 aaKnown RBP12.52□□□□□ -0.4
HDAC6-228ENST00000486227 EPHA10Q5JZY3 1008 aa12.52□□□□□ -0.4
HDAC6-228ENST00000486227 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.52□□□□□ -0.4
HDAC6-228ENST00000486227 GTF3C6Q969F1 213 aa12.52□□□□□ -0.4
HDAC6-228ENST00000486227 RRP36Q96EU6 259 aaKnown RBP12.52□□□□□ -0.4
HDAC6-228ENST00000486227 ERO1AQ96HE7 468 aa12.52□□□□□ -0.4
HDAC6-228ENST00000486227 SRRTQ9BXP5 876 aaKnown RBP12.52□□□□□ -0.4
HDAC6-228ENST00000486227 MAST3O60307 1309 aa12.52□□□□□ -0.41
HDAC6-228ENST00000486227 PATL2C9JE40 543 aaKnown RBP12.52□□□□□ -0.41
HDAC6-228ENST00000486227 FGFR1OPO95684 399 aaKnown RBP12.52□□□□□ -0.41
HDAC6-228ENST00000486227 SKIDA1Q1XH10 827 aa12.52□□□□□ -0.41
HDAC6-228ENST00000486227 AKNAD1Q5T1N1 836 aa12.52□□□□□ -0.41
HDAC6-228ENST00000486227 ZNF589Q86UQ0 364 aaPredicted RBP12.52□□□□□ -0.41
HDAC6-228ENST00000486227 NLRP10Q86W26 655 aa12.52□□□□□ -0.41
HDAC6-228ENST00000486227 ADAMTS13Q76LX8 1427 aa12.52□□□□□ -0.41
HDAC6-228ENST00000486227 DEXIO95424 95 aa12.52□□□□□ -0.41
HDAC6-228ENST00000486227 LMAN1P49257 510 aa12.52□□□□□ -0.41
HDAC6-228ENST00000486227 FAM160A1Q05DH4 1040 aa12.52□□□□□ -0.41
HDAC6-228ENST00000486227 CHRNDQ07001 517 aa12.52□□□□□ -0.41
HDAC6-228ENST00000486227 ANO1Q5XXA6 986 aa12.52□□□□□ -0.41
HDAC6-228ENST00000486227 MSL1Q68DK7 614 aa12.52□□□□□ -0.41
HDAC6-228ENST00000486227 DIS3L2Q8IYB7 885 aaKnown RBP12.52□□□□□ -0.41
HDAC6-228ENST00000486227 TRIM47Q96LD4 638 aa12.52□□□□□ -0.41
HDAC6-228ENST00000486227 FAM107BQ9H098 131 aa12.52□□□□□ -0.41
HDAC6-228ENST00000486227 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.52□□□□□ -0.41
HDAC6-228ENST00000486227 V9GYY5 206 aaPredicted RBP12.52□□□□□ -0.41
HDAC6-228ENST00000486227 GPR108Q9NPR9 543 aa12.52□□□□□ -0.41
HDAC6-228ENST00000486227 RBM28Q9NW13 759 aaKnown RBP12.52□□□□□ -0.41
HDAC6-228ENST00000486227 BCS1LQ9Y276 419 aa12.52□□□□□ -0.41
HDAC6-228ENST00000486227 CIAO1O76071 339 aa12.51□□□□□ -0.41
HDAC6-228ENST00000486227 GPT2Q8TD30 523 aa12.51□□□□□ -0.41
HDAC6-228ENST00000486227 SEC31BQ9NQW1 1179 aa12.51□□□□□ -0.41
HDAC6-228ENST00000486227 PIK3C2BO00750 1634 aa12.51□□□□□ -0.41
HDAC6-228ENST00000486227 B4DLN1 442 aa12.51□□□□□ -0.41
HDAC6-228ENST00000486227 MRPL12P52815 198 aaKnown RBP12.51□□□□□ -0.41
HDAC6-228ENST00000486227 SPA17Q15506 151 aa12.51□□□□□ -0.41
HDAC6-228ENST00000486227 ZNF174Q15697 407 aa12.51□□□□□ -0.41
HDAC6-228ENST00000486227 NIM1KQ8IY84 436 aa12.51□□□□□ -0.41
HDAC6-228ENST00000486227 TSC1Q92574 1164 aa12.51□□□□□ -0.41
HDAC6-228ENST00000486227 TMX1Q9H3N1 280 aa12.51□□□□□ -0.41
HDAC6-228ENST00000486227 SAMM50Q9Y512 469 aa12.51□□□□□ -0.41
HDAC6-228ENST00000486227 KIF5CO60282 957 aa12.51□□□□□ -0.41
HDAC6-228ENST00000486227 KRT40Q6A162 431 aa12.51□□□□□ -0.41
HDAC6-228ENST00000486227 PI16Q6UXB8 463 aa12.51□□□□□ -0.41
HDAC6-228ENST00000486227 PI4K2BQ8TCG2 481 aa12.51□□□□□ -0.41
HDAC6-228ENST00000486227 EXOC1Q9NV70 894 aa12.51□□□□□ -0.41
HDAC6-228ENST00000486227 RIMBP3CA6NJZ7 1639 aa12.51□□□□□ -0.41
HDAC6-228ENST00000486227 RIMBP3BA6NNM3 1639 aa12.51□□□□□ -0.41
HDAC6-228ENST00000486227 RIMBP3Q9UFD9 1639 aa12.51□□□□□ -0.41
HDAC6-228ENST00000486227 hCG_1642624A0A1W2PR95 340 aa12.5□□□□□ -0.41
HDAC6-228ENST00000486227 USP17L12C9JPN9 530 aa12.5□□□□□ -0.41
HDAC6-228ENST00000486227 USP17L21D6R901 530 aa12.5□□□□□ -0.41
HDAC6-228ENST00000486227 KIF4BQ2VIQ3 1234 aa12.5□□□□□ -0.41
HDAC6-228ENST00000486227 CCDC40Q4G0X9 1142 aa12.5□□□□□ -0.41
HDAC6-228ENST00000486227 ARFGAP3Q9NP61 516 aa12.5□□□□□ -0.41
HDAC6-228ENST00000486227 AGLP35573 1532 aa12.5□□□□□ -0.41
HDAC6-228ENST00000486227 YEATS4O95619 227 aa12.5□□□□□ -0.41
HDAC6-228ENST00000486227 RILPL1Q5EBL4 403 aa12.5□□□□□ -0.41
HDAC6-228ENST00000486227 IFNL3Q8IZI9 196 aa12.5□□□□□ -0.41
HDAC6-228ENST00000486227 RMND1Q9NWS8 449 aa12.5□□□□□ -0.41
HDAC6-228ENST00000486227 CPS1P31327 1500 aa12.5□□□□□ -0.41
HDAC6-228ENST00000486227 MAPKAPK5Q8IW41 473 aa12.5□□□□□ -0.41
HDAC6-228ENST00000486227 SDR42E1Q8WUS8 393 aa12.5□□□□□ -0.41
HDAC6-228ENST00000486227 DNAI2Q9GZS0 605 aa12.5□□□□□ -0.41
HDAC6-228ENST00000486227 CYP21A2P08686 494 aa12.5□□□□□ -0.41
HDAC6-228ENST00000486227 PARP1P09874 1014 aaKnown RBP12.5□□□□□ -0.41
HDAC6-228ENST00000486227 STX17P56962 302 aa12.5□□□□□ -0.41
HDAC6-228ENST00000486227 ZMYM1Q5SVZ6 1142 aa12.5□□□□□ -0.41
HDAC6-228ENST00000486227 TCERG1LQ5VWI1 586 aa12.5□□□□□ -0.41
HDAC6-228ENST00000486227 CRACR2AQ9BSW2 395 aa12.5□□□□□ -0.41
HDAC6-228ENST00000486227 VWA3AA6NCI4 1184 aa12.49□□□□□ -0.41
HDAC6-228ENST00000486227 GNA11P29992 359 aa12.49□□□□□ -0.41
HDAC6-228ENST00000486227 MAP9Q49MG5 647 aa12.49□□□□□ -0.41
HDAC6-228ENST00000486227 SEPT12Q8IYM1 358 aa12.49□□□□□ -0.41
HDAC6-228ENST00000486227 MTMR6Q9Y217 621 aa12.49□□□□□ -0.41
HDAC6-228ENST00000486227 NCAPD2Q15021 1401 aa12.49□□□□□ -0.41
HDAC6-228ENST00000486227 H7C1W4 665 aa12.49□□□□□ -0.41
HDAC6-228ENST00000486227 ADD1P35611 737 aaKnown RBP12.49□□□□□ -0.41
HDAC6-228ENST00000486227 ASIC1P78348 528 aa12.49□□□□□ -0.41
HDAC6-228ENST00000486227 IQCEQ6IPM2 695 aa12.49□□□□□ -0.41
HDAC6-228ENST00000486227 PLIN2Q99541 437 aa12.49□□□□□ -0.41
HDAC6-228ENST00000486227 KCNJ14Q9UNX9 436 aa12.49□□□□□ -0.41
HDAC6-228ENST00000486227 DLC1Q96QB1 1528 aa12.49□□□□□ -0.41
HDAC6-228ENST00000486227 IVLP07476 585 aa12.49□□□□□ -0.41
HDAC6-228ENST00000486227 TDRD12Q587J7 1177 aaKnown RBP12.49□□□□□ -0.41
HDAC6-228ENST00000486227 FAM47AQ5JRC9 791 aa12.49□□□□□ -0.41
HDAC6-228ENST00000486227 SH2D4AQ9H788 454 aa12.49□□□□□ -0.41
HDAC6-228ENST00000486227 DNAI1Q9UI46 699 aa12.49□□□□□ -0.41
HDAC6-228ENST00000486227 PPARAQ07869 468 aa12.49□□□□□ -0.41
HDAC6-228ENST00000486227 DTHD1Q6ZMT9 781 aa12.49□□□□□ -0.41
HDAC6-228ENST00000486227 TGFBRAP1Q8WUH2 860 aa12.49□□□□□ -0.41
HDAC6-228ENST00000486227 HOOK2Q96ED9 719 aa12.49□□□□□ -0.41
HDAC6-228ENST00000486227 ZNF274Q96GC6 653 aaPredicted RBP12.49□□□□□ -0.41
HDAC6-228ENST00000486227 ZNF408Q9H9D4 720 aa12.49□□□□□ -0.41
HDAC6-228ENST00000486227 NRXN1Q9ULB1 1477 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 133.5 ms