RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 SYCE3A1L190 88 aa9.04□□□□□ -0.96
USP4-211ENST00000485450 RIOK3O14730 519 aaKnown RBP9.04□□□□□ -0.96
USP4-211ENST00000485450 SLC5A1P13866 664 aa9.04□□□□□ -0.96
USP4-211ENST00000485450 GPR162Q16538 588 aa9.04□□□□□ -0.96
USP4-211ENST00000485450 DONSONQ9NYP3 566 aa9.04□□□□□ -0.96
USP4-211ENST00000485450 ROBO3Q96MS0 1386 aa9.03□□□□□ -0.96
USP4-211ENST00000485450 GTF2A1P52655 376 aaPredicted RBP9.03□□□□□ -0.96
USP4-211ENST00000485450 MAP2K1Q02750 393 aaPredicted RBP9.03□□□□□ -0.96
USP4-211ENST00000485450 NIM1KQ8IY84 436 aa9.03□□□□□ -0.96
USP4-211ENST00000485450 EAF2Q96CJ1 260 aaPredicted RBP9.03□□□□□ -0.96
USP4-211ENST00000485450 ZDHHC15Q96MV8 337 aa9.03□□□□□ -0.96
USP4-211ENST00000485450 CNTNAP1P78357 1384 aa9.03□□□□□ -0.96
USP4-211ENST00000485450 A0A1B0GUL7 405 aa9.03□□□□□ -0.96
USP4-211ENST00000485450 PSMD14O00487 310 aa9.03□□□□□ -0.96
USP4-211ENST00000485450 ARHGAP27Q6ZUM4 889 aa9.03□□□□□ -0.96
USP4-211ENST00000485450 ZNF784Q8NCA9 323 aaPredicted RBP9.03□□□□□ -0.96
USP4-211ENST00000485450 TAF1DQ9H5J8 278 aaPredicted RBP9.03□□□□□ -0.96
USP4-211ENST00000485450 RNF181Q9P0P0 153 aa9.03□□□□□ -0.96
USP4-211ENST00000485450 PA2G4Q9UQ80 394 aaKnown RBP9.03□□□□□ -0.96
USP4-211ENST00000485450 CLSTN1O94985 981 aa9.02□□□□□ -0.96
USP4-211ENST00000485450 UQCRFS1P1P0C7P4 283 aa9.02□□□□□ -0.96
USP4-211ENST00000485450 PPP4CP60510 307 aa9.02□□□□□ -0.96
USP4-211ENST00000485450 CCDC102BQ68D86 513 aa9.02□□□□□ -0.96
USP4-211ENST00000485450 CIAPIN1Q6FI81 312 aa9.02□□□□□ -0.96
USP4-211ENST00000485450 CREBRFQ8IUR6 639 aa9.02□□□□□ -0.96
USP4-211ENST00000485450 KLHDC4Q8TBB5 520 aa9.02□□□□□ -0.96
USP4-211ENST00000485450 ADARB2Q9NS39 739 aaKnown RBP9.02□□□□□ -0.96
USP4-211ENST00000485450 RAI14Q9P0K7 980 aa9.02□□□□□ -0.96
USP4-211ENST00000485450 DENND2AQ9ULE3 1009 aa9.02□□□□□ -0.96
USP4-211ENST00000485450 NCBP1Q09161 790 aaKnown RBP9.02□□□□□ -0.97
USP4-211ENST00000485450 CHAF1AQ13111 956 aaPredicted RBP9.02□□□□□ -0.97
USP4-211ENST00000485450 XAGE2Q96GT9 111 aa9.02□□□□□ -0.97
USP4-211ENST00000485450 HAUS7Q99871 368 aa9.02□□□□□ -0.97
USP4-211ENST00000485450 MKRN1Q9UHC7 482 aaKnown RBP9.02□□□□□ -0.97
USP4-211ENST00000485450 PPIP5K2O43314 1243 aa9.02□□□□□ -0.97
USP4-211ENST00000485450 PRPF40AO75400 957 aaKnown RBP9.02□□□□□ -0.97
USP4-211ENST00000485450 HIBADHP31937 336 aaKnown RBP9.02□□□□□ -0.97
USP4-211ENST00000485450 C17orf53Q8N3J3 647 aaPredicted RBP9.02□□□□□ -0.97
USP4-211ENST00000485450 ST7Q9NRC1 585 aa9.02□□□□□ -0.97
USP4-211ENST00000485450 LCMT1Q9UIC8 334 aa9.02□□□□□ -0.97
USP4-211ENST00000485450 MAST3O60307 1309 aa9.01□□□□□ -0.97
USP4-211ENST00000485450 IQCA1LA6NCM1 817 aa9.01□□□□□ -0.97
USP4-211ENST00000485450 ERICH4A6NGS2 130 aa9.01□□□□□ -0.97
USP4-211ENST00000485450 ITGBL1O95965 494 aaPredicted RBP9.01□□□□□ -0.97
USP4-211ENST00000485450 UVSSAQ2YD98 709 aa9.01□□□□□ -0.97
USP4-211ENST00000485450 MCAMP43121 646 aa9.01□□□□□ -0.97
USP4-211ENST00000485450 PNMA8AQ86V59 439 aaPredicted RBP9.01□□□□□ -0.97
USP4-211ENST00000485450 LDHDQ86WU2 507 aa9.01□□□□□ -0.97
USP4-211ENST00000485450 WDR66Q8TBY9 1149 aa9.01□□□□□ -0.97
USP4-211ENST00000485450 IL17RAQ96F46 866 aa9.01□□□□□ -0.97
USP4-211ENST00000485450 IDI2Q9BXS1 227 aa9.01□□□□□ -0.97
USP4-211ENST00000485450 TSPY26PQ9H489 355 aa9.01□□□□□ -0.97
USP4-211ENST00000485450 IFIT1P09914 478 aaKnown RBP9.01□□□□□ -0.97
USP4-211ENST00000485450 CYP2C19P33261 490 aa9.01□□□□□ -0.97
USP4-211ENST00000485450 HIRAP54198 1017 aaPredicted RBP9.01□□□□□ -0.97
USP4-211ENST00000485450 RASGRF1Q13972 1273 aa9.01□□□□□ -0.97
USP4-211ENST00000485450 METTL24Q5JXM2 366 aa9.01□□□□□ -0.97
USP4-211ENST00000485450 RNF214Q8ND24 703 aa9.01□□□□□ -0.97
USP4-211ENST00000485450 GOLIM4O00461 696 aa9□□□□□ -0.97
USP4-211ENST00000485450 TRIM66O15016 1216 aa9□□□□□ -0.97
USP4-211ENST00000485450 MBD3O95983 291 aa9□□□□□ -0.97
USP4-211ENST00000485450 GSCP56915 257 aaPredicted RBP9□□□□□ -0.97
USP4-211ENST00000485450 NBPF11Q86T75 865 aa9□□□□□ -0.97
USP4-211ENST00000485450 CNNM1Q9NRU3 951 aa9□□□□□ -0.97
USP4-211ENST00000485450 HMG20BQ9P0W2 317 aa9□□□□□ -0.97
USP4-211ENST00000485450 CEP126Q9P2H0 1117 aa9□□□□□ -0.97
USP4-211ENST00000485450 ADORA1P30542 326 aa9□□□□□ -0.97
USP4-211ENST00000485450 ZGPATQ8N5A5 531 aaKnown RBP9□□□□□ -0.97
USP4-211ENST00000485450 KCNQ5Q9NR82 932 aa9□□□□□ -0.97
USP4-211ENST00000485450 NSFL1CQ9UNZ2 370 aaKnown RBP9□□□□□ -0.97
USP4-211ENST00000485450 GPR75-ASB3A0A0A6YYF3 556 aa9□□□□□ -0.97
USP4-211ENST00000485450 TAF5LO75529 589 aa9□□□□□ -0.97
USP4-211ENST00000485450 SPDYE2Q495Y8 402 aa9□□□□□ -0.97
USP4-211ENST00000485450 DNAJC14Q6Y2X3 702 aaPredicted RBP9□□□□□ -0.97
USP4-211ENST00000485450 LRRCC1Q9C099 1032 aa9□□□□□ -0.97
USP4-211ENST00000485450 ZC3H12CQ9C0D7 883 aaKnown RBP9□□□□□ -0.97
USP4-211ENST00000485450 TTC12Q9H892 705 aaPredicted RBP9□□□□□ -0.97
USP4-211ENST00000485450 CWC22Q9HCG8 908 aaKnown RBP9□□□□□ -0.97
USP4-211ENST00000485450 GOLGB1Q14789 3259 aaKnown RBP8.99□□□□□ -0.97
USP4-211ENST00000485450 EIF6P56537 245 aaKnown RBP8.99□□□□□ -0.97
USP4-211ENST00000485450 LARGE2Q8N3Y3 721 aa8.99□□□□□ -0.97
USP4-211ENST00000485450 FAM184AQ8NB25 1140 aa8.99□□□□□ -0.97
USP4-211ENST00000485450 KIF18AQ8NI77 898 aa8.99□□□□□ -0.97
USP4-211ENST00000485450 KIAA1524Q8TCG1 905 aa8.99□□□□□ -0.97
USP4-211ENST00000485450 HACL1Q9UJ83 578 aa8.99□□□□□ -0.97
USP4-211ENST00000485450 UTRNP46939 3433 aa8.99□□□□□ -0.97
USP4-211ENST00000485450 PHKA1P46020 1223 aa8.99□□□□□ -0.97
USP4-211ENST00000485450 C11orf91Q3C1V1 193 aa8.99□□□□□ -0.97
USP4-211ENST00000485450 FAM83AQ86UY5 434 aa8.99□□□□□ -0.97
USP4-211ENST00000485450 KRT222Q8N1A0 295 aa8.99□□□□□ -0.97
USP4-211ENST00000485450 TLR7Q9NYK1 1049 aaKnown RBP8.99□□□□□ -0.97
USP4-211ENST00000485450 ANKIB1Q9P2G1 1089 aa8.99□□□□□ -0.97
USP4-211ENST00000485450 SPDYE2BA6NHP3 402 aa8.98□□□□□ -0.97
USP4-211ENST00000485450 SPDYE6P0CI01 402 aa8.98□□□□□ -0.97
USP4-211ENST00000485450 GMPSP49915 693 aaPredicted RBP8.98□□□□□ -0.97
USP4-211ENST00000485450 BMP2KLQ5H9B9 411 aa8.98□□□□□ -0.97
USP4-211ENST00000485450 NSUN4Q96CB9 384 aaKnown RBP8.98□□□□□ -0.97
USP4-211ENST00000485450 TEPSINQ96N21 525 aa8.98□□□□□ -0.97
USP4-211ENST00000485450 C1orf115Q9H7X2 142 aa8.98□□□□□ -0.97
USP4-211ENST00000485450 ZNF112Q9UJU3 913 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 130 ms