RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 ERCC3P19447 782 aa15.88■□□□□ 0.13
CCDC88A-211ENST00000471947 SYKP43405 635 aa15.88■□□□□ 0.13
CCDC88A-211ENST00000471947 NLRP5P59047 1200 aa15.88■□□□□ 0.13
CCDC88A-211ENST00000471947 CPLX3Q8WVH0 158 aa15.88■□□□□ 0.13
CCDC88A-211ENST00000471947 ZKSCAN5Q9Y2L8 839 aa15.88■□□□□ 0.13
CCDC88A-211ENST00000471947 MARCH6O60337 910 aa15.88■□□□□ 0.13
CCDC88A-211ENST00000471947 GOLGA8FQ08AF8 430 aa15.88■□□□□ 0.13
CCDC88A-211ENST00000471947 GOLGA8DPQ0D2H9 430 aa15.88■□□□□ 0.13
CCDC88A-211ENST00000471947 IKQ13123 557 aaPredicted RBP15.88■□□□□ 0.13
CCDC88A-211ENST00000471947 TPD52L1Q16890 204 aaPredicted RBP15.88■□□□□ 0.13
CCDC88A-211ENST00000471947 CLEC17AQ6ZS10 378 aa15.88■□□□□ 0.13
CCDC88A-211ENST00000471947 CATIPQ7Z7H3 387 aa15.88■□□□□ 0.13
CCDC88A-211ENST00000471947 MB21D2Q8IYB1 491 aaPredicted RBP15.88■□□□□ 0.13
CCDC88A-211ENST00000471947 FBXO18Q8NFZ0 1043 aa15.88■□□□□ 0.13
CCDC88A-211ENST00000471947 VIRMAQ69YN4 1812 aaKnown RBP15.88■□□□□ 0.13
CCDC88A-211ENST00000471947 SLURP2P0DP57 97 aa15.88■□□□□ 0.13
CCDC88A-211ENST00000471947 AMOTL1Q8IY63 956 aa15.88■□□□□ 0.13
CCDC88A-211ENST00000471947 CEP57L1Q8IYX8 460 aa15.88■□□□□ 0.13
CCDC88A-211ENST00000471947 CTCFLQ8NI51 663 aaPredicted RBP15.88■□□□□ 0.13
CCDC88A-211ENST00000471947 GPKOWQ92917 476 aaPredicted RBP eCLIP15.88■□□□□ 0.13
CCDC88A-211ENST00000471947 FAM84BQ96KN1 310 aaPredicted RBP15.87■□□□□ 0.13
CCDC88A-211ENST00000471947 MXD3Q9BW11 206 aa15.87■□□□□ 0.13
CCDC88A-211ENST00000471947 TCP10Q12799 353 aa15.87■□□□□ 0.13
CCDC88A-211ENST00000471947 PNOCQ13519 176 aa15.87■□□□□ 0.13
CCDC88A-211ENST00000471947 UBE3CQ15386 1083 aa15.87■□□□□ 0.13
CCDC88A-211ENST00000471947 ANO1Q5XXA6 986 aa15.87■□□□□ 0.13
CCDC88A-211ENST00000471947 ZNF654Q8IZM8 581 aa15.87■□□□□ 0.13
CCDC88A-211ENST00000471947 ZNF444Q8N0Y2 327 aaPredicted RBP15.87■□□□□ 0.13
CCDC88A-211ENST00000471947 OXER1Q8TDS5 423 aa15.87■□□□□ 0.13
CCDC88A-211ENST00000471947 DHX58Q96C10 678 aa15.87■□□□□ 0.13
CCDC88A-211ENST00000471947 PLEKHA8P1O95397 391 aa15.86■□□□□ 0.13
CCDC88A-211ENST00000471947 HSPA1LP34931 641 aa15.86■□□□□ 0.13
CCDC88A-211ENST00000471947 MECOMQ03112 1051 aa15.86■□□□□ 0.13
CCDC88A-211ENST00000471947 TRMT44Q8IYL2 757 aaKnown RBP15.86■□□□□ 0.13
CCDC88A-211ENST00000471947 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.86■□□□□ 0.13
CCDC88A-211ENST00000471947 V9GYY5 206 aaPredicted RBP15.86■□□□□ 0.13
CCDC88A-211ENST00000471947 BCL9O00512 1426 aa15.86■□□□□ 0.13
CCDC88A-211ENST00000471947 LDHBP07195 334 aaKnown RBP15.86■□□□□ 0.13
CCDC88A-211ENST00000471947 GTF2IP78347 998 aa15.86■□□□□ 0.13
CCDC88A-211ENST00000471947 CFAP100Q494V2 611 aa15.86■□□□□ 0.13
CCDC88A-211ENST00000471947 ZNF274Q96GC6 653 aaPredicted RBP15.86■□□□□ 0.13
CCDC88A-211ENST00000471947 SPATA31A5Q5VU36 1347 aa15.86■□□□□ 0.13
CCDC88A-211ENST00000471947 SPATA31A7Q8IWB4 1347 aa15.86■□□□□ 0.13
CCDC88A-211ENST00000471947 FOXP2O15409 715 aa15.86■□□□□ 0.13
CCDC88A-211ENST00000471947 AP5Z1O43299 807 aa15.86■□□□□ 0.13
CCDC88A-211ENST00000471947 MCM7P33993 719 aa15.86■□□□□ 0.13
CCDC88A-211ENST00000471947 RASGRP2Q7LDG7 609 aa15.86■□□□□ 0.13
CCDC88A-211ENST00000471947 CDCA7Q9BWT1 371 aaPredicted RBP15.86■□□□□ 0.13
CCDC88A-211ENST00000471947 CRNKL1Q9BZJ0 848 aaKnown RBP15.86■□□□□ 0.13
CCDC88A-211ENST00000471947 CLSTN2Q9H4D0 955 aa15.86■□□□□ 0.13
CCDC88A-211ENST00000471947 EP400Q96L91 3159 aa15.86■□□□□ 0.13
CCDC88A-211ENST00000471947 CACNB3P54284 484 aa15.85■□□□□ 0.13
CCDC88A-211ENST00000471947 KRT23Q9C075 422 aa15.85■□□□□ 0.13
CCDC88A-211ENST00000471947 AFF2P51816 1311 aa15.85■□□□□ 0.13
CCDC88A-211ENST00000471947 USP17L3A6NCW0 530 aa15.85■□□□□ 0.13
CCDC88A-211ENST00000471947 USP17L4A6NCW7 530 aa15.85■□□□□ 0.13
CCDC88A-211ENST00000471947 EPB41L2O43491 1005 aaKnown RBP15.85■□□□□ 0.13
CCDC88A-211ENST00000471947 USP17L1Q7RTZ2 530 aa15.85■□□□□ 0.13
CCDC88A-211ENST00000471947 TMC6Q7Z403 805 aa15.85■□□□□ 0.13
CCDC88A-211ENST00000471947 CLEC10AQ8IUN9 316 aa15.85■□□□□ 0.13
CCDC88A-211ENST00000471947 PYCARDQ9ULZ3 195 aa15.85■□□□□ 0.13
CCDC88A-211ENST00000471947 ZNF804BA4D1E1 1349 aa15.85■□□□□ 0.13
CCDC88A-211ENST00000471947 ZNF202O95125 648 aa15.85■□□□□ 0.13
CCDC88A-211ENST00000471947 TFAP4Q01664 338 aa15.85■□□□□ 0.13
CCDC88A-211ENST00000471947 HSP90AA2PQ14568 343 aaPredicted RBP15.85■□□□□ 0.13
CCDC88A-211ENST00000471947 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.85■□□□□ 0.13
CCDC88A-211ENST00000471947 HEATR3Q7Z4Q2 680 aa15.85■□□□□ 0.13
CCDC88A-211ENST00000471947 CCAR2Q8N163 923 aaKnown RBP15.85■□□□□ 0.13
CCDC88A-211ENST00000471947 DCCP43146 1447 aa15.85■□□□□ 0.13
CCDC88A-211ENST00000471947 SH2B2O14492 632 aaPredicted RBP15.84■□□□□ 0.13
CCDC88A-211ENST00000471947 RNF41Q9H4P4 317 aaPredicted RBP15.84■□□□□ 0.13
CCDC88A-211ENST00000471947 HPS5Q9UPZ3 1129 aa15.84■□□□□ 0.13
CCDC88A-211ENST00000471947 FAM196BA6NMK8 535 aa15.84■□□□□ 0.13
CCDC88A-211ENST00000471947 FOXN1O15353 648 aa15.84■□□□□ 0.13
CCDC88A-211ENST00000471947 TSPY3P0CV98 308 aa15.84■□□□□ 0.13
CCDC88A-211ENST00000471947 TSPY8P0CW00 308 aa15.84■□□□□ 0.13
CCDC88A-211ENST00000471947 DPCR1Q3MIW9 517 aa15.84■□□□□ 0.13
CCDC88A-211ENST00000471947 SCAF8Q9UPN6 1271 aaKnown RBP15.84■□□□□ 0.13
CCDC88A-211ENST00000471947 VWA3AA6NCI4 1184 aa15.83■□□□□ 0.13
CCDC88A-211ENST00000471947 POLR2DO15514 142 aaKnown RBP15.83■□□□□ 0.13
CCDC88A-211ENST00000471947 PIK3AP1Q6ZUJ8 805 aa15.83■□□□□ 0.13
CCDC88A-211ENST00000471947 PPP1R9BQ96SB3 815 aa15.83■□□□□ 0.13
CCDC88A-211ENST00000471947 PFKFB1P16118 471 aa15.83■□□□□ 0.12
CCDC88A-211ENST00000471947 XBP1P17861 261 aa15.83■□□□□ 0.12
CCDC88A-211ENST00000471947 FAM160A1Q05DH4 1040 aa15.83■□□□□ 0.12
CCDC88A-211ENST00000471947 NBPF3Q9H094 633 aa15.83■□□□□ 0.12
CCDC88A-211ENST00000471947 CDHR2Q9BYE9 1310 aa15.83■□□□□ 0.12
CCDC88A-211ENST00000471947 GRIN1Q05586 938 aa15.83■□□□□ 0.12
CCDC88A-211ENST00000471947 KAT14Q9H8E8 782 aa15.83■□□□□ 0.12
CCDC88A-211ENST00000471947 IFNKQ9P0W0 207 aa15.83■□□□□ 0.12
CCDC88A-211ENST00000471947 KIF23Q02241 960 aaPredicted RBP15.82■□□□□ 0.12
CCDC88A-211ENST00000471947 NOLC1Q14978 699 aaKnown RBP eCLIP15.82■□□□□ 0.12
CCDC88A-211ENST00000471947 NOM1Q5C9Z4 860 aaKnown RBP15.82■□□□□ 0.12
CCDC88A-211ENST00000471947 FANCBQ8NB91 859 aa15.82■□□□□ 0.12
CCDC88A-211ENST00000471947 ANO10Q9NW15 660 aa15.82■□□□□ 0.12
CCDC88A-211ENST00000471947 FAM170AA1A519 330 aa15.82■□□□□ 0.12
CCDC88A-211ENST00000471947 TPM4P67936 248 aa15.82■□□□□ 0.12
CCDC88A-211ENST00000471947 GRIK5Q16478 980 aa15.82■□□□□ 0.12
CCDC88A-211ENST00000471947 MFSD14BQ5SR56 506 aa15.82■□□□□ 0.12
CCDC88A-211ENST00000471947 LLPHQ9BRT6 129 aaKnown RBP15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms